Array 1 47-441 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSKV010000186.1 Raoultella sp. 18093 isolate 18093_SP04_D4, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47 29 100.0 32 ............................. GCCGCGGCGCTGGCTGCCATGGGGGCGGCAGA 108 29 100.0 32 ............................. TTGTGGAAGGTCGCGAATTCGCCGCTGGGGTA 169 29 100.0 32 ............................. GCGTGGCGTAGTGGCTGGTACACCCAGGACGT 230 29 100.0 32 ............................. GTCATGAGCCAAGTGCCGATCTTCATGCTTTA 291 29 100.0 32 ............................. TGCGTCCTTACAAGCCTGCGGCTGTGGCGCCT 352 29 100.0 32 ............................. ATGACGGCGCCCGGCTTCGCCCACTGGTGCCA 413 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GGGCCTATCCCCGCGCATGCGGGGGAACC # Left flank : CATGCGGGGGAACCAGCGATGGGAATGCAGTCGCTACGGCTTTCGGG # Right flank : GCCGACAAGACCTGTCTCTTATACACAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCCTATCCCCGCGCATGCGGGGGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 264099-264615 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSKV010000003.1 Raoultella sp. 18093 isolate 18093_SP04_D4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 264099 29 100.0 32 ............................. GCCCCGTTGACCTGCTTATCGTCCTTTTTCGC 264160 29 100.0 32 ............................. ATTGTTTTTCTTAAAATGTTTACGTTGGATCA 264221 29 100.0 32 ............................. CGCGATGTTGAATTTGCGTCAGGATGAAAGCC 264282 29 96.6 32 ............................A GCTCCATAAAAATCGCGCCGAGGAAATCATGA 264343 29 100.0 32 ............................. TGATGATTCAGGATGCGTTTATTCGATTACGA 264404 29 100.0 32 ............................. ACACTCACACCGGTTCAGATCGCTGACGCAGA 264465 29 100.0 32 ............................. GCGACTGTTAACCAGCGGCTGGATACATTAAC 264526 29 89.7 32 .T........T................A. ATGATCTGGATAAACTCCGCGAAGAGTATGAA 264587 29 79.3 0 TG.......A.C.......AT........ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.2 32 GCGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAGCAGGCGTGGTCGGAATAAACGAAGCCGGTTCCTCGCAGCTCTTTTCCCAGCCAACCTTGCCCGGCCTGTTCCTGCCATTCTGGCGCTAAAATATGCAGTATCGGTGGCTGACGTTCATCGGGCAGTATCGCTTTGCGTTCCCCACCGGCAGTGCGGATATGGCGCTGAAGTCGACCGGCGCGCTGGATCAACAAATCTATTGGCGCCAGATCCGAGATCATCCAGTCAAAATCCAGATCGAGGCTTTGTTCGACAACCTGAGTGGCGATTAACACTTTCCCCCGCCGCGCTGAAACGGGGGCATCTTTACCGAACCAGCCGAGGGTTTTATTCTCAATGGCAATACGATCGGCAAAGGCGAAGCGGCTGTGGAAAAGTAGCAGATCCTGTTCAGGGATGCGCTTTTCATGCAACAGCTGCTGATAATCTTCGCGTGCTTCATCAACCGTATTACGGATCCAACATACGCATTGCCCGGCTTCGACTGCACGATAAA # Right flank : GCATTGTGCATTACTGCCAGATAACGTAGGAACGTACTCTTCCACGGCTGCAGCAAAACGCCGGCTAGCCGTGCTTATTGGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACCTTGACGACGTCGCGGCTGCGGCGCTCGATGCGGCCGGGCAGCGCTTTGTCGATATGCTGCTGATTATCCAGCTGCACGCTGTGCCAGCTGGAGCCGTCAGGGAAGGCAGATGATTTTGCCCGCTGCTGGAAACCATCTTTCTTACCGAGCGACCAGTTGGTGGCCTCCACCGACAGCACCGGGATCCCGGCGCTATCAAAAACGCTGGCGTCGTTACAGCAGTCGGTGCCCTGCGGATAGTCGCGGTTCAGCCCCGGGTTGCTGAAGGCGGCAACGCCTTTGCTACGGGCGATGGCCAGCGCCCGGTCGCGGGTCAGCTTGCGAATCGCCGCCGGTGTGCTGCGGCCGCTATTAAAATAGAGCTTGTCGCCGACCACCAGGTTA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11-308 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSKV010000335.1 Raoultella sp. 18093 isolate 18093_SP04_D4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 11 32 100.0 35 ................................ CCGCGCATGTTCAAGGCCGCGCTGACGCTCTTTCA 78 32 100.0 33 ................................ TGGCTGGAGGTCACGCACACGGGCGGCGCCATC 143 32 100.0 35 ................................ CAACTGCCATCGCTCGAAAACGCATGGCTGTGCAT 210 32 100.0 35 ................................ CCGCGCATGTTCAAGGCCGCGCTGACGCTCTTTCA 277 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 35 GTCGCGCTCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : GGCTGTGCATG # Right flank : TGGCTGGAGGTCACGCAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //