Array 1 204844-204035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015878.1 Pseudomonas citronellolis strain SJTE-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 204843 28 100.0 32 ............................ TTCTCCGTGGATCCCGGGCGGGTGACAAGGGT 204783 28 100.0 32 ............................ TCTGGGTGTTGCAGCTGTGGCTTAGGCCTGAG 204723 28 100.0 32 ............................ TCAGCCTGCAGGTGCACCGGCTCGGCCGGATC 204663 28 100.0 33 ............................ CGCAAGGAGCGCAGCATGAAGGAACGCCCCATC 204602 28 100.0 32 ............................ TATGTCGGGCAGAACAGCGCGGCGTTCACCCA 204542 28 100.0 32 ............................ AGGCCGGAGATTCCCGGCATCGACGCCGCGGC 204482 28 100.0 33 ............................ TGACCGACACCCTGCAGGCCGCCCAGGTGCAAT 204421 28 100.0 32 ............................ TGGAAGAGAATCGGCTTGATGGCGCGCGAGAC 204361 28 100.0 32 ............................ TACAACGCATGGCAGGAGCTGGGGCGCCAGGT 204301 28 100.0 32 ............................ TGAACGGCATGGACATCATCAGCGAACCGGCA 204241 28 100.0 32 ............................ TTGTACGACGAGTTCAAGGAGTTCCTGGCCAC 204181 28 100.0 32 ............................ TGGGAGGGAATTAGGAGCGAACGCCGGGCACT 204121 28 100.0 32 ............................ AGGAAGCAACCGGCGAATGCCCGGACGGCCCG 204061 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 32 CTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGCGCTGGATTCGCTGATGGCGCAACCCTGGTTATCCGGCATGCGCGACCACCTGCGCCTGGGCGAACTGCTGCCGGTTCCCGCGGGGGCGCAGCATCGCCAGGTCCGCCGCGTGCAGGCCAAGAGCAACCCGGAGCGTCTGCGGCGGCGGCAGATGCGCCGCCATGGCTTCAGCGAAGAAGAAGCCAGGCAACGCATTCCCGACAGCGCCGCCCGCCGGCTCGACTTGCCCTACGTCCAGTTGCGCAGCCAGAGCAGTGGACAGAATTTTCGTCTGTTCATCCACCACGGCCCTTTGCAGAGCCAACCGGTGGCCGGGCACATCAACCGCTATGGGCTGAGCGATGGTTGTACTGTTCCCTGGTTCTGACCCTTTTTTCCGGAGCCTTCTGTACATCTTGGAAAATCAGTCACTTACAAGGGCCGTCGAAAAAAGGGATAGATGGGCTTAATGGCTGGTTTTCCTTGTAGCCACAACGACTTGGGAGCTTGAGTCTCTA # Right flank : GCACCGCCCCCTCGGAAGAGCATTCCTGCCGTACAAGCAGAGGCGCCCAGTCGCCCCCGCGCCGCCTGTTGCCTTATTCGGCATAGCCCTCCGCAATGTGCTGGTCCTTCAGCTTCACGTAGTTGCCCGCGGTATAGGCGAAGAAGGACCGTTCCTTGTCGCTCAGCGGGCGAGCCTTCTTCGCCGGGCTGCCGACGTAGAGGAAGCCGCTTTCCAGCACCTTGCCCGGCGGGACCAGGCTGCCGGCGCCGAGGATCACTTCGTCCTCTATCACCGCGCCGTCCATGACGATGCAGCCCATGCCCACCAGCACGCGGTTGCCGACGCTGCAGCCGTGCAGCAGGACCTTGTGGCCGACGGTCACTTCGTCGCCGATGGTCAGCGGGAAGCCGTCGGGGTTGTAGGGGCCGGCGTGGGTGATGTGCAGCACGCTGCCGTCCTGGATGCTGGTCCGGCTGCCGATGCGGATGCGGTGCATGTCGCCGCGGATGGTCACCTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 214196-213808 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015878.1 Pseudomonas citronellolis strain SJTE-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 214195 28 96.4 32 .........T.................. TCTGACAGCCGCAGCTCGGCCAGGCGAGCAAT 214135 28 100.0 32 ............................ ACCAGGGAGGCAGCCAGGATCACCACCACAAG 214075 28 100.0 32 ............................ AGCCAGAAATGAAAAACCCCGCCGAAGCGGGA 214015 28 92.9 32 T..............A............ GTGCTGGTTGGCATGGAGTAATTATAGTTACG 213955 28 100.0 32 ............................ ATGTGCCATGTCGGCGGCTTCGAAGAGGAAGC 213895 28 96.4 32 .......................G.... TACCGCGTACTGCTCGGCCGCGTGGCCGGCGT 213835 28 75.0 0 ....................T.CTTCCC | ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.4 32 CTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCGCCAGCAACTCGCCGACGCCGTCGAACACCCGGTTCTCGTACAACCCGGTGTCCTTGAAGCGCACCCGGTAATGGTTCACCGCCTCCCAGGCCCGCGCCTCGTCGAAGCCATAGGTGCTCATGAAGCACTGCAGCAGCGGCGGACCGATGAAGTGCTCGAGCCGGCGCAGGTCCGGCTCGTCGATGCCCAACTGCGCCAGGGCGTACTGGATCGAACGGGTGATGCCCTCGCGCGGGTCGGTAAGGGTGCCGTCGAGGTCGAAGAGGATGTTCTGGTAGTGCATGGACGAAGCTGCGGCAGGAAGAATCGAACCGGAAGCATACAACTGGCCTCCGTACCGACCAAACGCCCATGCAATGACTTCCTACCCTTTTTCTGGAGCCTCTTGCGAGTCCCATGAAAATCAATGGCTTGGAGAGGCCCCTGGAAAAAGGGGTATGCGTGTATATAGGGTGCTTTCTCGTGGGAAGTCAGGGGGTTGAGGAGTAATATCTCTA # Right flank : ATGCCAGGCGGTCAAGCAAACCTCCCTCATTCCCTTCCCCCGCATGCAGCAGTAGCATCGAGCAATTATCCCGCTTCGGCACCCGCGACCATGGACGAGTTCGCCCCTTCCGACCTGAAGACCATTCTCCATTCCAAGCGCGCCAACCTGTACTACCTCCAGCACTGCCGAGTATTGGTCAAGGGCCTTCGTCTCGGCTATGCGTGGCGATACGGAGCAGGACTTCCGCCAGAGCTGCATCGAAAGCCTCACGCGCACCGAGTCCCTCGACTTCATGATCGACACGCTCAAGGCCGTGGCCGATACGCTGGGAGAAGGCAGTCGGTGAACGTACTGCTGATCGCGCAATGCGATAAACGCGCGCTGGCCGAGAGCAGGCGCATCCTCGACCAGTTCGCCGAGCGGCGCGGCGACCGCACCTGGCAGACGGCGATTACCCAAGCCGGCCTGGACACCCTGCGCCGCCTGCTGAAGAAGAGCGCACGGCGCAACACTGCCGT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //