Array 1 943820-946105 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024619.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 943820 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 943881 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 943942 29 96.6 32 ...........A................. TTATCCCAATATATTTCGCTATCAGTTACATC 944003 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 944064 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 944125 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 944186 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 944247 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 944308 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 944369 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 944430 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 944491 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 944552 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 944613 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 944674 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 944735 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 944796 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 944857 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 944918 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 944979 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 945040 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 945101 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 945162 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 945223 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 945284 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 945345 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 945406 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 945467 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 945528 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 945590 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 945651 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 945712 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 945773 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 945834 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 945895 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 945956 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 946017 29 96.6 32 .......................T..... CGTTCATCGGCAGCGTCACGCAATATGAAGAT 946078 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 962238-964019 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024619.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BL10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 962238 29 100.0 32 ............................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 962299 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 962360 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 962421 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 962482 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 962543 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 962604 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 962666 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 962727 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 962788 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 962849 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 962910 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 962971 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 963032 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 963093 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 963154 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 963215 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 963276 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 963338 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 963441 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 963502 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 963563 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 963624 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 963685 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 963746 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 963807 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 963868 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 963929 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 963990 29 96.6 0 A............................ | A [964016] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //