Array 1 111530-116872 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJFI01000005.1 Bifidobacterium moukalabense strain CD33 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 111530 29 100.0 32 ............................. GCGACCGCAAACTCTGGGAACTGCAAATCACC 111591 29 100.0 32 ............................. GATACGCCTTACCCGTCGTCTTGTCATAGTAG 111652 29 100.0 32 ............................. CAGACATTGCGCATCGGCAACTATGCATTCAT 111713 29 100.0 32 ............................. CGTCATCCTGCATTCCGATACCGGCGACTACG 111774 29 100.0 32 ............................. GAAACCGTCCGTGAGATGGTCTCCGCAGTAGG 111835 29 100.0 32 ............................. AAGGTTGACTGGCACGACATCGCACGAATCCT 111896 29 100.0 32 ............................. CACGCCACGATTCGATGGCATTATCCGCGACA 111957 29 100.0 32 ............................. CACGCACCATCAACGGCACCTTGAGTCCAAGC 112018 29 100.0 32 ............................. CCTCCAAGGAGACGGCGGCGACAGCATAAGAG 112079 29 96.6 32 ............................T GGAGAGCTGAAGGAGCTCAAGAAGGGCGTCAC 112140 29 100.0 32 ............................. ATGTCTTCTGGAATGTGGAATGTGTTTCCTTC 112201 29 96.6 35 ............................A CGCAAACCATGGCAAAACCAATCAGCACACACACG 112265 29 100.0 32 ............................. GGCCGTGTGGGATTCCGTATCCCAGGTCCTGA 112326 29 100.0 32 ............................. CAGCGCCTGTACATCAACAATGCGGAAGTCAA 112387 29 100.0 32 ............................. AAAGCAGTCAACCAAGGCCGATGTGCACAACA 112448 29 100.0 32 ............................. CTGATCAGACGTGTCGGATTGGACACGGTGTT 112509 29 100.0 32 ............................. ATCGTCGGATATGCGGCGGGTTCCAGCACCGC 112570 29 100.0 32 ............................. TGCTCGCCGACGAGGCCGAACGAATGGGCATG 112631 29 100.0 32 ............................. CTTGTTGTCCGGTGCGTTGTCGAAAGTACCGT 112692 29 100.0 32 ............................. CGCCCGCTGAGCCAAGGAAGGAGAAGCCAGTG 112753 29 100.0 32 ............................. GGTTTGGACATCGGCCAGAACCGGCTTTTCAG 112814 29 100.0 32 ............................. TGGCAGTCCGACTGTTCCGGCGTCACCATCGA 112875 29 100.0 32 ............................. TCCAAACCATCTGGCAGCAAAGCATCGACCAT 112936 29 100.0 32 ............................. GCAGGACTGAATCTCGCGGGCATCAATACGTT 112997 29 100.0 32 ............................. AGGGCGCTGTTGCGTTTGTCGATGATCGTGCT 113058 29 100.0 32 ............................. CGTTAAAAGAATTGGAGTTATGAAAATGACTG 113119 29 100.0 32 ............................. CGGTGGAATCATCGAAATACGTGACAAAGAAG 113180 29 100.0 32 ............................. CGTTCGCGAAGACGCTCATGATTCCCCTCCGT 113241 29 100.0 32 ............................. GCGATCAAAGACAGGGATGACACCCGCTACCA 113302 29 100.0 32 ............................. CCCTCCCGTCCAAGACACCGGAGACGGATCCC 113363 29 100.0 32 ............................. CCGATTCGTCTTGTAAGGTTCGCCACGACATC 113424 29 100.0 32 ............................. GAACGCAACGCAGTCGCACAGCTTCACTCAAT 113485 29 100.0 32 ............................. GAACGCAACGCAGTCGCACAGCTTCACTCAAT 113546 29 100.0 32 ............................. TTCATCTTCAATACGTCTTTCCGCCTTGAATG 113607 29 100.0 32 ............................. GCGGCTTCGACATGTTCTGGAGTGATTGTGAC 113668 29 96.6 33 ............................T TCGTGACCTTCGCGGTTACGGAAAAGCCGGTGT 113730 29 100.0 32 ............................. GTGGGTTGTCATCTCGGAGCACTTCGACGGAT 113791 29 100.0 32 ............................. GGGACTCAACCGACGCGGCGGACGGCATGCAA 113852 29 100.0 32 ............................. TATGTGACGGACGCAGATTCGATGTAAAGCCG 113913 29 100.0 32 ............................. AGTGCCAAGCCTTTGCGGGTGATCTTGACCGT 113974 29 100.0 32 ............................. TCACGGATGAAATGAGCCACCTCGATACCGAA 114035 29 96.6 32 ............................T GCGAGAAGCATTAGAGCGTCTTCACCCATCAT 114096 29 100.0 32 ............................. TAGCTTCACTGCTACCGTCATCGCCGTGGAAG 114157 29 100.0 32 ............................. AAGCCATACATGATCGAGCTCGGTGCTACGCG 114218 29 100.0 32 ............................. GACGGATTAGAAAAACATTCCCGAAACTTGCA 114279 29 100.0 32 ............................. ACCGGGTTCCGCCATCACGTCGGTTACGTTGA 114340 29 100.0 32 ............................. CAATCAAATGACCGATGATATTGCCGAACTTG 114401 29 100.0 32 ............................. TAGCGTATCAGGCATTGGATAATGATGTTGAT 114462 29 100.0 32 ............................. AAGTCCTCCAACGAGTTGATAACCATAAGGTC 114523 29 100.0 32 ............................. AGATGTAGCACTCAGAGTCGGTGATTATGATC 114584 29 100.0 32 ............................. GAGCGTGGAGAGCACGGACATCGCAGATCGAT 114645 28 96.6 32 ...-......................... GAGCGTGGAGAGCACGGACATCGCAGATCGAT 114705 29 100.0 33 ............................. GACGTGTACGCCAAGGGCGTCATTCTCCATGAC 114767 29 100.0 32 ............................. TATGGCAGCAACAACACCACTATCAGCATCGA 114828 29 100.0 32 ............................. AGGACCATGCGCGAAGTCATGCCGGTCTACAA 114889 29 100.0 32 ............................. TGGCTTGACGCGAGCCACCTGTACGGCATCCT 114950 29 100.0 32 ............................. GATGCGCACCACGTCGCCGTCTACTTGGGCGG 115011 29 100.0 32 ............................. CGATGAGATATGGACTGCTCGAACAAATGTAC 115072 29 96.6 33 ............................A CCAGAACCCAAAAGAAAGAAAAAGAAGAATTTC 115134 29 100.0 32 ............................. AGGTCATGCACGTCCGTAAGAAGACCGCAGAC 115195 29 100.0 32 ............................. TCATAATCCGTCATGCTGAGATCATCGTACAG 115256 29 100.0 32 ............................. CGTTGACGCCGCATAATCCAAGCTGTAGCAAG 115317 29 100.0 32 ............................. GGCCAAGCAAACGGAGAGCAGGACGGTAGCGA 115378 29 100.0 32 ............................. TGATCGACGGCGGAGACCCACTCACACTGTAT 115439 29 100.0 32 ............................. GCCAACACAGCCCTCGTTAGCGGACACAAGAT 115500 29 100.0 32 ............................. GCTCGTGTGACGGGCGGCCGGTATCGTGTGAT 115561 29 100.0 32 ............................. GTCGAACCATCCTCGAAACCGCAAGGCATGAT 115622 29 100.0 32 ............................. TGGGAAAATCTACGACTTCGTCCGAACCCTCC 115683 29 100.0 32 ............................. CGGACAACGCGCGTTTCGTCATCACCGGACGC 115744 29 100.0 32 ............................. CGGTTCGCGGCACGGGTCTTGGGCGTGGTGAG 115805 29 96.6 32 ............................A CGTTCGTGATCGGATGCAGCTTCACCTTCGAG 115866 29 100.0 32 ............................. AGGACTCCCGCGATGTCGCCGGTGTCGGCGGT 115927 29 100.0 32 ............................. CGGGCAACTTCACGCCTTTGACGAGCTGAGTG 115988 29 100.0 32 ............................. TACAACTACGATCCGCAGGGCACCTGGGAGGT 116049 29 100.0 32 ............................. TGGTTTCCGTCACCGATGGAGTAGCCACGGCT 116110 29 100.0 32 ............................. GGCGTTCCGATGGGAGCCAATACCGGAATGGA 116171 29 100.0 32 ............................. CGGAAACCCGCACCACCAGCAAGGGTGATGCA 116232 29 100.0 32 ............................. GGTTGGCGAGCCTATGTGTGTCAGATGCGTTG 116293 29 100.0 32 ............................. GCCGGCAGGCCGGAAGACCCCGCGCCCAGTCT 116354 29 100.0 32 ............................. AGGGTTGCGGAGACCTGATCGTTGGTGAACGG 116415 29 100.0 33 ............................. TTCATCGGTGTTCTGTCTGACAAGACGCTCATC 116477 29 100.0 32 ............................. CAGATCAGCCAGGGGATGGATCCGACAATATC 116538 29 100.0 33 ............................. TTCGCCTGATGGACGATCGCCTTGTCCTCGCTG 116600 29 100.0 32 ............................. AGTCTCCGGGGTCGTCCAACCAAGGGCGGCCC 116661 29 100.0 32 ............................. TTCTGCGCGAGCATCACGCTTCCGTTGAACGG 116722 29 100.0 32 ............................. AGGCAGACGAATCAGTGGGAGGACGGTGATGC 116783 29 100.0 32 ............................. CTGCGAAGGCTCCGCAAGGAAAACAAGATTCC 116844 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 88 29 99.7 32 GTGTTCCCCGCACATGCGGGGATGATCCC # Left flank : TTATGTTGGTTTGTGGGATGACCGAGCGGGAGAAGTGCCTGCCGGAAAATCCTATGCCAATGATGAGTGGGACGGCGAAGAGTGGTAGTGGTTGTACTGACGGCATGCCCGGTAGGCCTGCGGGGTGATCTTACCCGATGGTTGTTGGAGATATCGCCAGGTGTGTTCGTGGGACACCTTGATGCACGTATCCGTGAGAAGCTTTGGGAGCGCATTGTCGAGCTTTCGAAAAGTGGGCGTGCCGTTATGGTCTACTCTGCACGTAATGAACAGCATCTGGCGTTCAAGGTGCATAGAGCGGATTGGTTACCAACGGATTGCGATGGGTTGGAACTTGTGAAGCGTCCTAAGGAAACAAAAGAAGTGTCATTTGCCGGCACGCCTCGCCGTGGGTGGAGCAATGCTAGTAAATATCGTCAGGCAAAGAGATATACAAAACGAAACTGAATCAAAAAGTGCATAAATACGATAAACATCCTTGATATTGTGCTATTTTCTTA # Right flank : CGAGGAATGGAATACGGACGAATTCGACTAGTTTGCGAGACGTTTTCCATCTCGCCAACGCCTTCGCATTGATCGACAGGGCGCGCGGATAGACTAACCTATACGACATTCCCCTTGGGCTGCATACGGGGTTTGCGTGAGTCTTGGCGGATTATCGCCAGCCCCTTTCCTTTAACCCTTGAATCGAACAAACGTTCGACTCTGATTTATAAGGTACAACCACGAAATGACATTTGCAAATCAACGTAAAGGTAGGATAGGAACATCCGTCTCGAGAAGAAGAACACAATGACAGGCCAGAACAACATGCAGCCGCAGGATACCTCCGATGCGAATCGCCTACGCGCGACGTCATCACGTCCTGTGAGCGCTCTGGTGGCGATATGTGTCGCCGTGGCGTGCCTGCTTGTCGGAATCATCTCCACAGCCCCAATCGCCTACACTCGCGGCGTGCATTCCGCTGCGGTCTCCAAAGTGGCCGAGGAAACCGCCAAGGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //