Array 1 964272-965702 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034232.1 Salmonella enterica subsp. enterica serovar Montevideo strain ATCC 8387 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 964272 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 964333 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 964394 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 964455 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 964516 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 964577 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 964638 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 964699 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 964760 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 964821 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 964882 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 964943 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 965004 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 965065 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 965126 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 965187 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 965248 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 965309 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 965370 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 965431 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 965492 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 965553 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 965614 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 965675 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 982326-986199 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034232.1 Salmonella enterica subsp. enterica serovar Montevideo strain ATCC 8387 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 982326 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 982387 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 982448 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 982509 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 982570 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 982631 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 982692 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 982753 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 982814 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 982875 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 982936 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 982997 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 983058 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 983119 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 983180 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 983241 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 983302 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 983363 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 983424 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 983485 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 983546 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 983607 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 983668 29 100.0 32 ............................. TTATCACCTGAATGAGTTATATAGCGTTTTCC 983729 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 983790 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 983851 29 100.0 32 ............................. CCCCCACCAACCCCGCACCGCGCTGGCTAAAA 983912 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 983973 29 100.0 32 ............................. AACTGGTGATGTGTGAGCCAAAATTACGTGAC 984034 29 100.0 32 ............................. AGGCGATCGACGCGGAACTGGTGCGCGGTGAA 984095 29 100.0 32 ............................. TGGATGTGTACGCCGCCTCGCCGGATGAGGCG 984156 29 100.0 32 ............................. ATCGGCATTTCTCCAATCATGCAGCATGCGCA 984217 29 100.0 32 ............................. TTGTTGATTTTGTCGAAGGTCTTGAGCAGTGG 984278 29 100.0 32 ............................. ACAGGTAGATCATTTATTAATCAGAATTAACA 984339 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 984400 29 100.0 32 ............................. GTCTGTCTTTATTCCGTGATAGCGCCACTCAA 984461 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 984522 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 984583 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 984644 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 984705 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 984766 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 984827 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 984888 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 984949 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 985010 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 985071 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 985132 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 985193 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 985254 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 985315 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 985376 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 985437 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 985498 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 985559 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 985620 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 985681 29 100.0 32 ............................. CATCCCCGCGCAGCGCTAACGTCCAGGCATAT 985742 29 100.0 32 ............................. GATGCCCGGGGAAAACTAGATACCACCGCAAA 985803 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 985864 29 100.0 32 ............................. GGCGAACCCGCAACGGCACCGCAGCCAATGAC 985925 29 100.0 32 ............................. GGAGTAAAGGGGAATTTTTGGACATGTCGCCA 985986 29 100.0 32 ............................. ATCAGCTGCTCGCTGTAGGACATTTCTGTGAT 986047 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 986109 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 986170 29 96.6 0 ............T................ | A [986197] ========== ====== ====== ====== ============================= ================================= ================== 64 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //