Array 1 7575-8886 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOG01000057.1 Sphaerimonospora thailandensis strain NBRC 107569 sequence057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 7575 30 96.7 31 .............................G GCGTTGCCCTCCTGGCGGTGAAGGGCCACGA 7636 30 96.7 31 .............................G CCTCCCGGTCGAGGCCGCCGGCCTCGGTCAG 7697 30 100.0 31 .............................. GCTCCGGCGCCTCGTGGCCGATCAGGAAACC 7758 30 100.0 31 .............................. CATGCCTGACCTTGAGGTCCACGCTGTCGGT 7819 30 96.7 31 .............................T CGACCTACCCCGGCACGGACTGGCCGGGCAA 7880 30 96.7 31 .............................C GCCGCAGATCCTCCGACAGGATCGGCCACTC 7941 30 100.0 31 .............................. CGTACCGGCCCGCCGATGGCGCCGCGCAGGT 8002 30 100.0 31 .............................. GGTACTCGTCCTGCCCCGTCCGGGTCACCAA 8063 30 96.7 31 .............................T ACCCGGCGGCGTGGTCGCGCCGCCGGGCGGG 8124 30 96.7 31 .............................C GCACCTCCGCCGCCCCCGCAGGTAAAGCGGA 8185 30 96.7 31 .............................G GCTCGAACACGCTCGTGCGCGCCCCATCCCG 8246 30 96.7 31 .............................T GGGTCATCGCTGAGGATCAGGTGCAGGACTG 8307 30 100.0 32 .............................. TATGAGCATGAAGCCGATCACGATCACCGTTG 8369 30 100.0 31 .............................. CGAACATCACGGGTAGGTCACAGTTCTCGTG 8430 30 96.7 31 .............................T CGTCCCAGGTGCGGCCGTCGAGTCCGCGCCC 8491 30 96.7 31 .............................G AAATGACCGCCAACCTCGACCTCGCCGCCCA 8552 30 96.7 31 .............................G AGGAACCGGGGGAGGGGGGTTCCGCCCGGAG 8613 30 96.7 31 .............................G CCAAAAAGCTCCGCGCGGCGGTGTTGAGCCT 8674 30 96.7 31 .............................C ACCCCCGCCGGGAGCGTGCCACGCTGCCCGA 8735 30 100.0 31 .............................. GGCGTATGTGCAGCAGCACAGCATCTCCCGG 8796 30 96.7 31 .............................G GCTGGCGGGCCAATCTCGCACACCGGACGAT 8857 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ================================ ================== 22 30 97.8 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : CCATGTGCCGCCACAGCGGCAGCCATCCGTCGGTCTCCCGATCATGCTTGGCCCACACCGACCGCGCCTCAGCCGTCAACCCGTCAACCAACTCGCGAGACACCGGCTCCTCATTGAGCATGCAGGCCATTAAAAGGCACAACTCCCCAGAAGCTCCCGCGAATGCAAGGAAAGGAGGAATAAGCAATCCTCAGGGGGAGGTTTTCTTCTCCTCGCGAGAAGAAAACCTTCTCTCCCGCCGCGCATGTCCGCGACCACCGCGTCCCATCTGATTGCAGTGCCCCGCGAACGCCCTGCGCGCGCTGGCACAGCCCCTCGCTTCCTGGGAGGGGACAATCACCGTGACTACGTTTGCTTGCACGCGGAATCCGATCACGCAGCTGGATGACGAGAGTAACCTGGTACGGCGGTACAACAAACAACGAAAGCCCGAAATGTCCGAATCATTGAAAGTGCTCAAAACTCACGTCCTGGCCGCCTAAACGTGCAGGTCACGCAGT # Right flank : TTTCCCTCTCTCCAGGTGACGCCCTCATGGA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33-1645 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOG01000058.1 Sphaerimonospora thailandensis strain NBRC 107569 sequence058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 33 30 100.0 31 .............................. GTGCGCGCGGGAGCGTGGCTCGCGCATCCGA 94 30 96.7 31 .............................T GACCACGGCGGCGCTGGGAGCCGCGCGGGAA 155 30 96.7 31 .............................C GGTATGTGCGTGGCCAGATCATTTCGTCGGT 216 30 100.0 31 .............................. CGGATTATGAGGATCTCGTATCGATCTTGCC 277 30 96.7 31 .............................T TGAAGCCGGACATCAGGCGGCGACCTTCGCG 338 30 100.0 31 .............................. CGCTCGACTGCACCATTGACGATCTCCTGAC 399 30 100.0 31 .............................. GCACCCCCGCGGCGCGGCCACTATTCGAGGT 460 30 100.0 31 .............................. ACTGGTCGCCTATGGATTCAGCTAGCCGGAT 521 30 96.7 28 .............................C GCCGCCGCCGCCGGAACGCAGGTGGGCG 579 30 96.7 31 .............................A CGGTCAGTCCTGCCCGGGGTGGAGTTTGCGG 640 30 93.3 31 ............................GC AGCAACGCTGTCTACCTCGGACTAGCCCTCC 701 30 96.7 31 .............................A TCGGCCCACAAGACCAGTGGCTACGGTAGCA 762 30 93.3 31 ............................TT CAGGCTCAGCGCAGACGGGCCCCACTGGTCC G [783] 824 30 96.7 31 .............................T GCGCGGTGTCCTGCGTCGAGCCGACCGTGTA 885 30 96.7 31 .............................C AAGTGGTCAGGATCGAGTGGCGTTTCGTCGC 946 30 96.7 31 .............................T GCACAGCCGGGGCGGGGGCGACAAGCCGGTC 1007 30 96.7 31 .............................A AGATCAGCTTTGCCGAGGTTGCCGGGGCGAT 1068 30 100.0 31 .............................. GGTTCGACATCACGCTCCGGCCGGAGCGCCT 1129 30 100.0 31 .............................. CGTCCCCGGACGCGCCGCCACTATTTCCGGT 1190 30 96.7 31 .............................C ACCGACCACGCCGCCGTCGCAGCCTTGATCA 1251 30 96.7 31 .............................T GTGCGCTCGCTACTGGTCGAGCTGACCAACG 1312 30 100.0 31 .............................. GCGCGAGCAGCGTCTTCGCCGCCGCGATCTG 1373 30 100.0 31 .............................. CGTTGGCCAGGTCGTCGCGCAGGACGCCGGT 1434 30 100.0 31 .............................. GCGGCGGTTTGCCCACCCCGGATCATGTGGA 1495 30 86.7 30 ........................TC..TC GAGCGGCTCCGCGCGACCGCCCGGCACATG 1555 30 100.0 31 .............................. AGATGGCTTGCCTTGGGCTCATGCTCGGGAA 1616 30 73.3 0 ............TG........GCACA.T. | ========== ====== ====== ====== ============================== =============================== ================== 27 30 96.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : ATTGAGGACGCACTCCAGTGGGAGCGGGGCTCG # Right flank : GCGTGATCTGCACGTTTAGACGGGCAGGAAGCAGTTTTCGAGCATTTTCGCGGGTTAATCCCCCTCTCAGGCCAGGCGGGACTCGTAGACGGACCGTGCTTTCTCCAGCAAGTCCAGATGATCGCGGAGCTGGGATCGGGTCCGCAGGCGGGCGTGGTCCCGGACGAGGGCCTCCAGTAGGTCCAGCCAGTGGAGGCACCAGCGGACGTCTTCGAGCCGGGCGACGTGCCGGCCGGCCACGTCGAGATAGACCGGGCTCGTGTGGGCGAAGGCGGGCCGGTACGGCGAGCGGGGGTGACGCCCTCCCGTGGCGACCGCGACGACATACGTGGGTTCGCCGACGACCAGGGATGTCGTCAGCTCGCCGCCGGGCCCCTCGGCGATCGTGCCGTCGGCGGTGCGAATCTCCAGGCGCTCGACCTCCGGCCCGATCGTCCGGGCCGTCACCGTCACCCGGTCGCCCGGCAGGGGCTCCAGCGTGTCGCCCGGCCCACGGCCCT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2211-5719 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOG01000008.1 Sphaerimonospora thailandensis strain NBRC 107569 sequence008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================== ================== 2211 30 93.3 31 ............................TG TGACCGTCGATCGCCGCCAGGTCGGCAAGGT 2272 30 96.7 31 .............................A TCACGCGGCCTCCTTCACGGTCTCGCGGGCG 2333 30 96.7 31 .............................A ACACCGGCGTGCCGATCCTGCATCCCGAGGC 2394 30 100.0 31 .............................. ATAGGGGAGCGCCGCGCGGCGCTCCCCGCAA 2455 30 100.0 31 .............................. GTCTTGCGTGCTCGGTTGTCCCTGATCAGGG 2516 30 96.7 31 .............................A AGCTGGGCGGGGGTGCGGGCCTCCGGGCCGA 2577 30 96.7 31 .............................A GCTCCCCCGGCAAAAGCGAGAGGGCCGGGCA 2638 30 96.7 31 .............................G GAGCGTCGGGTACGGGGCATGCCGCCTGACC 2699 30 100.0 31 .............................. CTTCCTTGGTCACGTAGGTGTTGGCCGGGTC 2760 30 96.7 31 .............................T ACGCCTACACCGTGACCGAGCAGCCCAGCGC 2821 30 100.0 31 .............................. GCCGCAGATCCTCCGACAGGATCGGCCACTC 2882 30 96.7 31 .............................G GTGCCGTTCCCGCGCTGGAGTTCGGCCGCCT 2943 30 96.7 31 .............................G GCGGTGCTTCGTCGGTCGTCCCGGTCCGTTT 3004 30 96.7 31 .............................A GCGACGACAAGCTGTCACAGGCCGAGTGGTC 3065 30 100.0 31 .............................. AACCCCTCGGCGCCCACGAGCGGACGGAGAC 3126 30 100.0 31 .............................. CTTCCGATCGACCTTGGCCCAGAACCGCTCA 3187 30 96.7 30 .............................G CCGAGTGGGAGCTGCTCAAGGAGTGGGCCG 3247 30 96.7 31 .............................T CCGAGTCCGTGTCCACGACGTTCGGATCTTT 3308 30 96.7 31 .............................G TCAGCTCCCGCCGGTTCCCCTCAGCGTCCAG 3369 30 96.7 31 .............................G GCCACGACTGCCGGGGATCCCGCAACGACGA 3430 30 100.0 31 .............................. AACCAGCACCACTAGCGATAAAGATTCCCGT 3491 30 96.7 31 .............................A GAGGGATCGCGCAACGAAGGGGGCGGCCATT 3552 30 100.0 31 .............................. TCGGCCTCCTCCTCCAGCCCGGCAGCAGCGG 3613 30 96.7 31 .............................T TGTGGATCGCGGTCCGCAACGCCGGCACCCA 3674 30 96.7 31 .............................T GCCCGATGGGGTGCGGCGAGTCCTTGGTCGT 3735 30 100.0 31 .............................. CTCTACCCGATCCTGCGCCGCCTCGAAACGG 3796 30 100.0 31 .............................. GGGCGGATGCGCTCTCATGATCGGCGACCGT 3857 30 96.7 31 .............................T CCTTGAGCGCGTCGACGAACGCCAGCTCGTC 3918 30 96.7 31 .............................G CGACCCACGAGGCGATCGACGCCGTAGCGTC 3979 30 100.0 31 .............................. GCAGGGCTTTCGCCCGCACCGGCGTGATCCG 4040 30 96.7 31 .............................G CGCCCAGGGCGTCGCCGATCGCCCCCGACAG 4101 30 96.7 31 .............................G TCGCCACGGATACGATCCGGGCGATGCTGCT 4162 30 96.7 31 .............................A ATCAGCCGGTGACGATCAACGGCTCGGTCGT 4223 30 96.7 31 .............................G TCAACGACCAACGGAACGCCAACGCCCCCAT 4284 30 96.7 31 .............................A GGCGGGTCACGAACTCCTCCTCGGAGTCGAC 4345 30 96.7 31 .............................A GGCCGACTACGACGACGACACCGAAGGAGAC 4406 30 96.7 31 .............................A AGGCTACCGAGACCTTCCAAGTCGCCGGCCG 4467 30 100.0 31 .............................. ACGTCGGCCTATCGGGCGTCGGACTGGGATG 4528 30 96.7 31 .............................G ACGCCCCCATGTCCGTGCCTTCCGCCTCGAA 4589 30 96.7 31 .............................A CCTCGACCCGCCCATCGGCCGGCTGAACACG 4650 30 100.0 31 .............................. ACACTCGGCATGACGAAGAAGGTTGGTGTTT 4711 30 96.7 31 .............................G TCAACGGGAAGCTCGACGGCCGGATCAGAGC 4772 30 100.0 31 .............................. GAACCCTGAGCATTTCTTGGGGTGACAACTG 4833 30 96.7 31 .............................T GCGAGCGGAGCACACGCGGGGCGAGCGTCTT 4894 30 96.7 31 .............................T CGGCCGGGTCGGCAGCGCTATTCTGCGGCCG 4955 30 100.0 31 .............................. GCCCTCCGGACGGGTAGATCCGCAGGACGCG 5016 30 96.7 31 .............................G AGCGGGGCGGCCCGTCCAGCGCCGCCCGCCA 5077 30 100.0 31 .............................. TCGCCCAACGCGCCGAACAGGCACGCGGCGT 5138 30 96.7 31 .............................G GAGGCACCACGACACCCCTGCACGACGGGCA 5199 30 96.7 31 .............................G CTGATCACGAGGAATATCAGTTTCTCGTCAA 5260 30 100.0 31 .............................. TAGAGACCGTTTGGCAGGTCCACGAGTCTCT 5321 30 96.7 31 .............................T GCTCCGCCTTCCGGATCTCCGTCAAGACCTT 5382 30 96.7 31 .....T........................ GGACGAGGAGACCGGGCTCGGGTGCGGCAAG 5443 30 100.0 31 .............................. ATCGGTGCATGAGCGACAACTGGGGATGGTT 5504 30 96.7 31 .............................A CCAGACCGATGTACTTCAGCTCGCCGAACAT 5565 30 96.7 94 .............................G GTCCGCGATGCCGTCAAGATTGGCGAGGACGGTGCCCCCCGGGCGCAGGAATGAACCCTCTGTTTGTCATTCTGTGTCTGTACGATGACGGATA 5689 30 90.0 0 ..........T.G................A | C [5714] ========== ====== ====== ====== ============================== ============================================================================================== ================== 57 30 97.6 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GTGATCTGGTGACGGTGATCGTGCTCACCCGCTGTCCAGTAGGCCTGCGCGGCTTCCTGACCCGCTGGCTGACTGAGATCTCGCCAGGCGTCTTCATCGGCGGTCCGTCCGCCCGAATCAGGGAAGCGTTGTGGAAGGAAGTCCGGCAGTACGCGGATACCGGTCGTGCCCTCCTCGTGCATAGCACGAACAACGAGCAAGGGTTTACATTCGACACCCATGATCACAAGTGGCATCCAGTCGACCATGAGGGTCTTGTCTTGATCCGTAGGCCGAAGGAGCAACCTGCCATCTCTTCGGCTGCCCCTCCGAGCGGCTGGAGCAAGGTGGCAAAACGTCGCCGATACGGCCGGTGAAGGAAGTGACGAGCGCTGCCCTGAGCCCGTCAATCCGGGCTCCGGATGAAACGCATCACCGGGGGATGCCTGCCCGAAATGTCTGAACCTTTAAAAGTGCTCGAAAACTGCTTCCTGTCCGTCTAAACGTGCAGGTCACGCAGT # Right flank : ATTTGGCGTGGTGCATGGCTCGGGAAATAAAGCCGTACACCACGCCTATAGTCAGGCGAAAAGGCTGTTGCCCCAGTAGTCGCCAGCGTCGGCGAGGCCGGGCGGGCAGGCGAAGATGCCGCTGGAGACGTGCTTGATGTATTCGTTCAGCGAGTCCTTGGCGGCCAGCGCCTGCTGGATCGGGACGAACTGCTTGTGGGGATCGCGCTGGTAGGCCATGAAGAACAGCCCGGCATCGAGGCGGCCCAGTCCGTCGGAGCCGTCGACATAGTTGTAGCCGCGGCGCAGGATGCGGGCGCCGCCGTGGAGGGACGGGTGGGCGAGCCGCACGTGCGAGTCGTCGGCGATGACGGGTTTTCCGTCGGAGCCGGTTTTGGCGAGATCCGGCTCGTCGAACTCATCCCGGCCGGTGAGCGGCGCGCCGACGCCCTTGTCGCGGCCGAAGATGGCCTCCTGCTCCGACAGCGGGGCGCGATCCCAGGTCTCGATGTGCATGCGGA # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //