Array 1 169185-169749 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084019.1 Megasphaera massiliensis strain NBRC 114414 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 169185 32 100.0 35 ................................ ACATAGGCTATATATACAAACCCACCAGATGGAAC A [169200] 169253 32 100.0 35 ................................ TTTATACCACCACTCCTGGGTTCTTAACAACAGAT A [169268] 169321 32 100.0 34 ................................ AATCTTGCTCTCTGTGAGCGTATGCAGACCATAA A [169336] 169388 32 87.5 34 ........CTT..T.................. TAGGTTGATTTTCTTTAACTTTATCATGTAAATC 169454 32 87.5 34 ........CTT..T.................. TTGTACAAGTTGATTGCCTGCCCGGCTGCCAGTA 169520 32 87.5 35 ........CTT..T.................. ACTGTGAAAATTGCTTATTTCGTCCTCTCTGCGGA 169587 32 84.4 33 ........CTT.GT.................. ATTAAGTGGGAAATGCATGTACTGTGGCCCAAC 169652 32 100.0 34 ................................ GCAATCAATAATAGAGGAGGTGGCACGCATGAAT A [169667] 169719 31 87.5 0 .....-..C.T..G.................. | ========== ====== ====== ====== ================================ =================================== ================== 9 32 92.7 34 GTCGCACCTCGCAAGGGTGCGTGGATTGAAAC # Left flank : GTCGGCCCGTCCCGAAGGTAGTATCGAAATGACGAAATTCTATTGGGTCCGCCACGATAATAAAACGGGCAACGCCTCATCGGCTCGCGTCCATCGCAGTGTCACGGCCAGCTTAAAAGAAAATGTTACGGCAGCCCATACCTTTGAGGACTACGTCATCGACGACAGCGCCTTGAAGAATATTGCCGGACTCAACATTGAAGTCTATCAGGAAGGCGAAAAAATCCAGTAAGGGATGCTGGAGAGAAACCGAGAAATTTGACCATAGTCGGCTAACATGACGTTACATATTAACCCTATGACGGAACTTGTGCATCAGAACTGGGGGAAGGCATAGACTGACAGTGCGAAGATATAGTGAACATCGTATTGGCCGCCAAAAATCTCGATTACGATAGAAAAAATTGATTAAATCCCTAATTTAGTAAGAACAAACTGTATCAGTGGGGAAATATCCCCATCGATACACGCAAAAGAGACTATAAATATGTCCTTTTGCT # Right flank : CAGCTATGATCAAGGAAGCACATCAGTTGTTATTTCGATGCATAGAAGGAGGTTGAAACAAATGATTGAACTGATAGTCTTATACTTTATTGTTGATTTCTTCACTGTACAAGCTTATCTGACTCAACGAGCCGTACTTGATATACAACGGGCGCTTATGTTACCCTTTGATTTCAGGCCAATTGTTTGCCCTCTGTCAAAATGGTACAAATTCCGTAGGATACCTCAAGTCATTGACTTTGCTATTCTTATCTTCATAGCGTATCAGTATAAATGGTATTATGCAGCAATTTTACTTATCCTTGATTTTGCAATAACAACATTCATCCCTGTTCCAAAAAGCAAGATGGATTGGGCAAAAGATAAAATGGATGAAACAGCACTACAACTCGCGAAGTAAGTGTTAATGTTCTTTATCCATAAGTTCATGGATTGAAACATTTACCTTGAGTATTTGTTGTCGGATTGTTATAACGTCGATGAACGTCTATTGCAAGTTG # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGCAAGGGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 170774-171134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084019.1 Megasphaera massiliensis strain NBRC 114414 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 170774 33 97.0 32 ................................A GCATATTCGATGTCCGATGCATCATACACCAT 170839 33 100.0 32 ................................. ACAGTGGGCAGATGGATTATGCCAAGAAAAAT 170904 33 97.0 34 ...........T..................... TCCGAGAAAAGAAAATATTCTGCGGCCAAGAATA 170971 33 100.0 33 ................................. ATCGGCACTCATAGACGCACTAAACTATGGAGA 171037 33 97.0 33 ................................T GCCCTCGCTTGGTACACGCTACCCGATAGCCAG 171103 32 90.9 0 .........................-.....TA | ========== ====== ====== ====== ================================= ================================== ================== 6 33 97.0 33 GTCGCACCCTTCATGGGTGCGTGGATTGAAACG # Left flank : TATACAAGGAAACTCATCAGTTATTATGTAGATGTATTGAAGGATATAGGAAGGTGTTATTATGAATGTTCTGCGTTGGATACTTGTTTTACCGTCTTTTATTGTTTCTTATGGCCTTGTTCGTTTTATTGCCTTAGCACTCATTTTAATCTTTGCCGGGACGACGGGCCTTCTCTATGCATTTTGTTCCATCGTTGTTGAAGGGATACTTGCCACCATGTTTGCACTGGCCGCTTCCGTTTGGGTAGCACCGTCGAACCACGACAAAGTAGTATATGTGTTGTCGGCATTCGTCGTAATTGTATCAGCCATTAGCTTGTTCATGGGAGTTGGAAAATATGGTTTTGGAAATATGCCGGACTGGCAAGGAGCTATCACGGTTGCAGCAATGGCCGTTACTTGTTTATATATATCTCGTCTCACGCACAAGGAAGGGACGGTAAAAGTTTTCGGAAAATAAAAAGCCCACATAATAAGTATCGTGTGAGTATAATACTATG # Right flank : ACCCAGAACTTCGGATAACGTTAAATTATCGTAAGTTGCACTACCATGTGCGCGAATCGAAAATGGCAAAAAGAATGCCCTCTCTACATCAGTAGGGAGGGCATTTCTATGCTTGAATCAGTCTTTGAAGTAAGGCTTGAATACGGAGCGATTCGGTTCTTTATGTTGTTTTTTTTCGGAGCGCTGGTTGTTGCGGAAGGTGCCGTGGTTATTGGAGTCGCGGTTTTTAGGAGCGAAGTGACGACGGCGTTCGCCTCGTTCTTGGCCGTCTTCTTTACCGTTACGGCGGTCTTTCCGATTGCGGTCGTTACGGCGATAGTTGCGGTCGCGGTTATTTTTCCCTTGGCGGCTGCGATGGACGCGGAGGGGGGCTTCTTCGGTAATTTTGACGGGCGTCGTGTCCGGTTCTTTCGTGAGCAGCTTGATAGCGGCTGCGACGAGGGACGCCGAGTCATAGTTGGACAGAAGTTCTTCGGCATTTTCTTTGTAGCTGCCGAAAT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 311547-310217 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084019.1 Megasphaera massiliensis strain NBRC 114414 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================== ================== 311546 32 96.9 34 .........T...................... TTTGCAACTTTTACAATCGTGCCGGAGTACAGGC 311480 32 100.0 33 ................................ CCGGAAGAGATGACGGAAAAGGCTAAGCAGGAA 311415 32 100.0 34 ................................ ATCGTGACATCGCCATTAAGGGTAGACGTACCGT 311349 32 84.4 32 C.......T...CG.A................ ACAGCCGAATTCAATAAAGCCCGTAGTGGATT 311285 32 84.4 32 C.......T..CAG.................. TTGGAGCCGGGGAAGCGCGTTAATCAAAACTT 311221 32 68.8 33 A........TC.GCA...A..G..G...T... TGCTGTACAGCCAGATTATTCATGTCTGGAATC 311156 32 68.8 98 A....T....CCG...ACA.....T.....T. TTGGTGCCGAGGGAGGGACTTGAACCCTCAACGTGTGTCGGAATCTGTGAGTGGGTGAATTGAAACTCAGAATATGCAGAAGAGGCCAATGTTACTAC 311026 32 81.2 33 A........T..AC....AT............ TGACATTCAAAACTGGGATAGTGGAGCTAATTA 310961 32 93.8 35 C...........C................... CGGGACGATTCGGGGCATATTGTTAAATGGAGCAG A [310948] 310893 32 90.6 32 T...........C..................T ATTGCTGAGACTTACGTACCGACCTACTATTT A [310880] 310828 31 71.9 32 A...C..-.AACA..A......A......... AAAGAAGTCTATTCCAATCTTACGATTCCCCA 310765 32 75.0 33 .....TG..TC..G...C...G..G....... TTCATGATTCTGGCTATTGGTGCAGGGCTGCAT AC [310752] 310698 32 81.2 32 C....T...T.CC.A................. GATTTGATTGGTGGGGTTGGATGTGAAAAAAT G [310685] 310633 32 96.9 32 C............................... TGTTCAGCCGCTTTTGCTTGTGCATTGTACAT 310569 32 93.8 33 A..........G.................... ATCTGCTTGATGTTGGCGTCGTAATCCTTCTGG 310504 32 93.8 33 C............G.................. TATGTATGTACGTAAGATTGGAAACAGATGGTA GTTTGG [310486] 310433 32 90.6 33 T............G...G.............. TTGGTCCTCAGGGGTCATACCTTCGACTGGTTC G [310420] 310367 32 87.5 88 T.........A.GA.................. ACGCAAATGTCTCCAACATTTGCCCAGCGCTTTTGCCGCACCTTCATGAGGATGGAGTGAAAGACACCAGACTTAGGATCTGGCGTCT 310247 31 46.9 0 TCGGCATTGTCA.A...-.....C...A..T. | ========== ====== ====== ====== ================================ ================================================================================================== ================== 19 32 84.6 40 GGTCGCACCCTTTTGGGTGCGTGGATTGAAAC # Left flank : GAAGGCATATCCGTTTTTAAAGATGATTTTTATAAAGGGGAATTGACTAAATAAAAAAAAGTCCTTGGATTCGGCACCTTCCCTATAACGGGAGGACTTACTACCAAGGACGCTATTAACGGATTTGGCAATATTATATGTTCTTGAAAAGGAACTGTCAAGCTGCAGCAGTAACGGCGTTATGGATGCGGTGGCGTGAAGGCAGGATATTATGGTTTTAAGTAAAATGGTGCTATAATGAAATTAAAAGTACTGGGAAATAAACCGTTGAGCTGCGGGGATGCTCGGAGCATAGGAAGTCATATAAAACTATGGTGGAAAGCATGCCGAGAAACCGTACGCAGTGCCAAGGTATAGTGAACATCCTTTTTGTCGATTAAAAACCATGGTGATCGCAAGGGAAAATTGAGCAAATCCCTGCATGAGTAAAGAAGAAACGTGTCTGTGGGAGCCTATCCCCATAGCTGCAAACAAAAGTGGCTGTAAGAAAACACTTTTGC # Right flank : TTATCTTATCACATCGTTTTTTGCTTCTTTTTCAACTTTTTATCTTGCTCCGCCTTTCGTTGACATGCTTCTATTTGTCATGCTATAGTAAGAACGGTATAATATAAGGAATAGGTCAGGTGTCTCAGACTTAATAGAGAAGCCGGTTCAATGCCGGCGCGGTCCCGCCGCTGTAAGGTGGAGCCAGGCTGCATGATGTCACTGTACGTTTTGTATGGGAAGGCGCAGCTTTGGCCATGAAACCAAGCCAGAAGAACTGCCTGACGGATAATCACCGATAGACCTGCGAGCGATGGGAAGGAGATTGTACGGAGCATATTCGGGGACTGTCGTCTATACGACGGTCCTTTTATCTTTGCAGCCCTTCTCTTGCAGGTCGTTACAGGAAAGGGGTTCATTCGTACCATGGAAGCGATGATCAATGGTTTTCAGTTGTTTCAGCAAGGCGGCCCGGTCATGTATCTGTTATTGGCCTGTTCGCTCTTTGCGGTGTATATTGG # Questionable array : NO Score: 7.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.23, 5:0, 6:0.25, 7:-0.52, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCACCCTTTTGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 320864-320607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084019.1 Megasphaera massiliensis strain NBRC 114414 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 320863 36 97.2 38 ...................................G GTTCCAGGCGTCGCAACAATCGTTTAAATATTTCATGA 320789 36 97.2 37 ...................................G ATATTTTTGGTGGAAGCACAGAAAACTGTTCTCCGCG 320716 36 100.0 38 .................................... ATGGATCTTTAGAAGAACAATCGGCAAAATTTTCTACC 320642 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 98.6 38 GTTACATTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : CAGGCGCGGACCTTGTCGTGAAGAACCATAATCCTTGAAAGGGGACGGAAACCAACAACAACATATATGTTTCAATCCTCCACACTCCCTCACGGTTAAGAACGATTGAACACACTCCTTTCTTTGTGAGAAGGGAGATTTTGTAGGGAATCCCCGCAAGGGGACTGAAATCGGAGAAACTACTTTTTTATGATGTACAGCAATGTTGGTCACGGTACTACCATCTCCGGGACTGCTGTTATGGCTGCTCCTGGGGAGGCTTTACGGGATGATCTTGCGGTTGTTTGACAATGCTTGGCGGAAAACGTATACTTGAGATAAGTCGAGGTACTGCAGAGGTTTGAAAATTTTCAAAACCTCTAAAAATGGCGTAACTAAGCGGAAAAACGGCATCGCCTGATTTTTATTTTTCACCCGGGTCCCTGAAAAAGGAGAAAAAAGCCCGAGGTTTGAAAAAATCGCTTGTAGGCCCGCTCCCAGAGCGGGTACTGGGAGACAGG # Right flank : CGCCAAACAAGTTTGGTCAGCCATACTAACAAGACCGTCACATTACCCCATTCCCCGGAGTTAAATTGCCTCCTTTTTAGAAAAGGAGTCTATCAATAAGGGGCCGGTATGCTACTAGGCGCAAAAATGAAGAGTGCATGAGAAATGCCGGTACGGGCATCTGTTTGTGATGTCCGGTACCGGCATTTGTATGTTTGGGTTATTCTATTGATTCACGGGTAGGGGTGAAATGATGGTTGTCAGTCCTAAATGGAGGCGCTTCGGAGCATAAGTTGAGGTTTGCTTTTTCATGGGGCAAGGCTTTTTTTATGACAGATAGGAGATGTATGACCGATTGAACCGGGTGTAAAGAAAGGGCTATCAGACAAGCAGCATATTTGACAGGGACATATTCTGTCATGATGGTTCTGTATAATAGAGCTTATAACAGCAATGGAATTCGTGAGAAATTCGCCAATTGGGAGGAATGGGATATGACGGTATCGAGATTTCGTTTTTTG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 324327-323537 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084019.1 Megasphaera massiliensis strain NBRC 114414 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================================================================================================================================================================================================== ================== 324326 23 95.7 53 ........T.............. TTTTTTATATCAGTTGGCAATTCGTCGAAGTGGTACAAAGGGTGAAGAACCTC 324250 23 100.0 48 ....................... GAGTCCACCCGGAATTTTATAAAGGTGTCTTTTACGGTTAAGAACCCA 324179 23 95.7 51 ..A.................... ATGTATACGATGTCGCACCTTGATTCAAGTTCTAATAATGTTAAGAACCAG 324105 23 78.3 229 ........T......C...T.TG CGTGCTGCTAGGTGTAAAAATGAAGAGTGCATGAGAAATGTCGGTACCGGGCATCGATGGGTGATATCTTTTGTTCTGTCACGATGTGATGAACATGCTGGTTTTGAAGATTTGTGATAGACATTTTCACAGAAAATCCCGAAAAAAGCAGAAAAATAAAATCCGCCCCGCAAATGCCATTTTCGATGGCACAGTGAAGCCATTGGTAAGGGGTGCTGTTAAGAACCCT 323853 23 100.0 51 ....................... TTTTTTTGTTGTATTTAGCAATGACTTTCGGCGTGGCCTGTTAAGAACCTC 323779 23 100.0 51 ....................... CGTTTTGCTTCTGCTACCAACATTCGCCGGGATGCTACAGTGAAGAACCTC 323705 23 95.7 50 ........T.............. ATCTTTTTCATCTCCTTCCGATTACGATTTTTTGGCCCGTGAAGAACCAT 323632 23 95.7 50 ....T.................. TGGTTGAATTGTTCGAGGGTTACTTTGTCTCCGTTTTGGTTTAGAACCAC 323559 23 78.3 0 ........T......C...T.TA | ========== ====== ====== ====== ======================= ===================================================================================================================================================================================================================================== ================== 9 23 93.3 73 AATCCCCGCAAGGGGACGGAAAC # Left flank : GCCTCATCCCATGTATATGGGCGGAAAAATCAGTCGTACCCTCTATAAACACGGCCTTATCTCACGGAACATCAAAATTAAGATACAGCCGGACGAAGCAATGAACAAACAATATCATATTGCCATTCCTAAATAGGGCTGGTGGAGCGTAAAGGAGACTTGCCTTTTGATGGGAGGGTCTCCTTTTTTGCTCTTGGACAAAGGTCAGAATGGGCTCTTTTTCAAGGAGCACATTTTTAAAGGAAAAAGTGTTTCATAGGGCCAGCATCAGAAAGTATTCCGAGATTCACCAAAGAGCTTCAAGAATATGGTATAATATGAATAGATTCATGGATTTTATACCATTTCGCCCCGATGTGATGAAAAGGCGGCCTTTGAGGATTTTTGAAAGCTAATTTCAGCGAAAAAGCAGGAAAAATCCGAAAAACAAAATCCGCCCCGCAAATGGCCTTTTCGATGGCGTAGTTAAGCCATTTGTAAGGGGTGCTATGAAGAACCAC # Right flank : TTGCTGGCGTAAAATGAAGAGTGCATGAGAAAAGCCGGTACGGGCATCTGTTTTGTGATGTCCGGTACCGGCATTTTGTATGTCGAGGGGAATTTTGTTGAGCTGGAGGGGCTGCGAAATGATTGTATTGCCGGTCCTGTATCTGGGATGACGGAGCATACAGAGAGGCTTGCCTTTTGACGGGCGAGTCTCTTTTTTGATTCCGGGGAAGTTATGTAGAAGTCGGGAACTTAGTATGGCTAATGATATTCATAAATATGATATAATTATCGTGAATAATTTATTGAATCTAAAAATAGAATGTTATAGACTGCCAGCTTTATGAGTGGAATGGTGCAGTCGTGCTTGATGATGCGTATTTGGTAAGCCGTGAAGGAAGGTCCATGAGAGAATAGCTATGCTTGAGGAAGGTTGGTATGATATACTGAAAGATAGAGAAAGGTTCGGTTGAAAGGTTGTCGATGGAATTCTAGCGTTAGAGAGAGTTATTATCATACTAT # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-2.84, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 621845-621556 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084019.1 Megasphaera massiliensis strain NBRC 114414 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 621844 31 100.0 34 ............................... CCGTAGCCCCTGGTTTTGTCCCAATATGTGCAAT 621779 31 100.0 34 ............................... CGATAACGGGGCCCATACATTTGACTCGAACCAA 621714 30 96.8 34 ..................-............ GCAGTGGCTTGCGCAGGGAACTTTCTAGTCCCAT 621650 31 96.8 32 .........C..................... GTATTACTTATTTTTTTATTTATCATACTTTT 621587 31 80.6 0 ..........TCG............G..GG. | T [621573] ========== ====== ====== ====== =============================== ================================== ================== 5 31 94.8 34 GTCGCACCCAAACGGGTGCGTGGATTGAAAC # Left flank : CCGTCGGCACAGGACGACCGGCAAGACAAATACCCTCGCCGTAAGGCAGGAAACGCTCTTCGCCTCGGCAGGACAAGCTCGAAAAAGAATTTGTATAAAGTATCTGCGTGATTTTCATAATGGTAAAGCTCCTCATGATGCTGGAATGTTTCTATTATAAGTCATTCCGGAAGAGAATGTAAGGAGGATCAAGAGAAAGTTCGGAGAGGACAGAGACATTCCTGACAGGGAGTTCTTTAGTACAGCGTGAAAGATGAGGAAAAACTGATTTTTCTTACAGAAAGAAAAATCACGTGTGCTATAATAGTCTTAACAAAGCCCGAAGAGATAAAGACGATGATAAATGCGAATGGGAAGTGACCATGATAATTCCCCGTGAAAGGAGGAGATAAAATAGAAAAATGTAAACCTTGTCCCTAATCACAGTCGAATAAGACTCGGTAGTGGGAACTTAGCTACGTCGATGTAAAAGAAAGAAACGAAAAAATAAAATTTTCGCT # Right flank : CGGGTTTAGATGCCCTAAATTTGGGCACAAAAAGAGGCTGTACGCCGTGATTTTGTTTTTCACGGGTACAGCCTTTTTGCTATCACCTTATAAGAAAATATATTTTAATACGAAGATGACGGCTAGGACGTACATGAGGAGGGAAATTTTTTCCCGTTTGTTGGTCAAGACGTTGATGAAGACATACGAGATAATGCCGAAGGAGATGCCTTCTGAAATGCTGTAGCAGAAAGGCATGGCAATGATCGTAATGTATGCCGGAATGGATTCGCTGAAGTCATCAAAGTCGATGCCGACGACGGCGGTCAGCATGAGGAAACCGACAATGACCAGGGCCGGTGCCGTAGCAAAGGCCGGAATGGCCATGAAGAACGGCGATAAGAAGAGGGACAAGGCGAAGAGGATGGCTACGCAGACGGCAGTCAAACCGGTGCGGCCGCCTTCACTGACGCCGGTAGCACTTTCGACGAAGGTCGTCGTCGTGCTGGTACCGAGGACGG # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCAAACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.80,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 2352776-2353166 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084019.1 Megasphaera massiliensis strain NBRC 114414 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 2352776 23 100.0 52 ....................... AGGAAAATTCCGGATACCACCCGTATTTATAATCTATAAGGTTACGTTACCA 2352851 23 100.0 51 ....................... ATCTTGGCAACATTGTTATTATTGACGAGCGTCAATACGGTTACGTTACCA 2352925 23 100.0 48 ....................... GGTCAAGCGTTAAGCTGATATTATAGTTGTTATATCGTCAGCGTACCA 2352997 23 100.0 49 ....................... TTATATAATTCATTTGTATACTAAGAAGCTAATCTCCGTTACGTTACCA 2353070 23 100.0 51 ....................... GATGCGCCGGCAACAAACTTCTGTACGGGATAGCCTTTGTCAGCGTACCAA 2353144 23 73.9 0 .....T.........T...TTTT | ========== ====== ====== ====== ======================= ==================================================== ================== 6 23 95.6 50 AATCCCCGTAAGGGGACTGAAAC # Left flank : CGAATATAGTATCTCTCCGAACGGGGACGGAAACACTTTAAAGCCAAAATACTTTTGCTGGTTGATTATGAACGTTACGACACCAATCCCCGTAGGAGACGGAACACTTTTGTAATGGCCGGTACAATTTTTCCCTTTGGTAAGAACTTGAATCCCCGAGATGGGCTGTGATGGCCTTTCTTGGGGATTTGTTCTGTTTGCCTCCTTCGTTGTGGTGCAGTGGTTTGACAAGGTGCAGCGAAAAAAGTATACTTGAGATAAGTCAAGGTAATACTGACTTTATCTGACCTTTGGAAAACCTATTTTGGAGCCGAAAACCCCGTAGGTTTGAAAATTTTCAAAATGGCTACAAATGGCGTAACGAAGCGGATAAACGACATGGCCTGATTTTTATTTTTCACCCGGGTCAGAGAAAAAGGCGAAAAAAGGCCGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCAGGGAGCGGGTACTGAGAGACAGGGGTTACGTTACCA # Right flank : TAAGGCATGAAAAAGCCGTGGATTTATGTTTTTTTCATAGATCCATGGCTTTTTTTGGCTGTATTCTATTCGCATGTTGTTTTTTCAAAAAATGGAGGACTCTGTTTTATTCAGTGTTTGCTTGTCGTGCCGGAAAATGCTTTTGTCTGGGATTTCGCTAATTGGTTGGGATATGATAGAATTAAGATATAATCATGGAGGATGAGGTGAGGTTATGTCTTATAACTTACCGGATGCGGTTTTGCGGGATATTTCTCGGTTTGCTGAAAAACATGGTGTTCGTCGAGTCCTTTTATTCGGATCTCGCGCCCGGGGGACACAGTCGGAGAGAAGTGATATCGATTTGGCGGTCTGCGGTGGAGATTTTGATGGTTTTTATTGGGATATCAAGGAGCACACGCACTCTCTTTTGATGATTGATGTCATTAATTTAGACGCAGGCATTTCTGACGGCCTGAAAAGAGAATTGGAAAGGGATGGGGTGACGCTGTATGAAAAAG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.26, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 2354847-2355017 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084019.1 Megasphaera massiliensis strain NBRC 114414 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 2354847 23 100.0 52 ....................... GAAGGGTTCTTTATTTTTATAAGCTGTTCATTATTAACAGTTCCATTACCAA 2354922 23 100.0 50 ....................... GTGAGCTTGTTCTTCCATTTTTTACCATTCCATTCGAGTTCCATTACCTA 2354995 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ==================================================== ================== 3 23 100.0 52 AATCCCCGTAAGGGGACTGAAAC # Left flank : TAAGAACCACAATCCTTACAAGGTGACTGATACTACCCTAGGATTTTCTCGAGGCCGATTACTATGATGGGGGTAATTATGTTTTCCACCGTTTTGTAATGGCCGGTACAATTTTTATTTCCTTTTTTATTTCCTTTGGTAAGGAACTGTAATCCCTGAGATGGGCTGTTAGGCCTTTCTTGGGGATTTGTTCTGTTTTGGCCTCTTTGTTGCGGTTGCGCTGTTTGACAAGGATTAGCGAAAAAAGTATACTTGAGATAAGTCAAGGTAATACTGACATTGCCTGACCTTTGGAAAACCTATTTCAGGGTCAAAAACCCCGTAGGTTTGAAAATTTTCCAAATGGCTACAAATGGCGTAACGAAGCGGATAAACGACACTGGCTGATTTTTATTTTTCACCCGGGTACCTGAAAAAGGCGAAAAAAGCCGGAGGTTTGAAAAATTCGCCTGTGAGCCCAGTCAGGGAGCGGGTACTGAGGGACAGGGTTCCATTACCAA # Right flank : CTTTTAAGTTTGTTAAATAAACTTTCTCCAATAGTAATGGTTCAATTACCAAAATCCCCGGAGCCATTAGACTCCTTTTAGAAAAAAGGGCGGGATATTTTTTGTAATGGCCGGTACAATTTTTTTCCTTTGTGTAAGAAACTTGAATCCCTGAGATGGACTGTGATGGCCTTTCTTGGGGATTTGTTCTGTTTGGCTCCTTCGTTGTGGTGCAGTGGTTTGACAAGGTACAGCGAAAAAAGTATACTTGAGATAAGTCAAGGTAATACTGACTTTATCTGACCTTTGGAAAACCTATTTCAGGGTCAAAAACCCCGTAGGTTTGAAAATTTCGAAAATGGCTACAAATGGCGTAACGAAGCGGATAAACGACACTGCCTGATTTTTATTTTTCACCCGGGTCCCCGAAAAAGGCGAAAAAAGCCTGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCTGGGAGCGGGTACTGGGGGACAGGGCTACGTTACCAAATCCC # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.60, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 2355511-2356044 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084019.1 Megasphaera massiliensis strain NBRC 114414 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 2355511 23 100.0 51 ....................... GAGGTTGCGAAAGTAATAATAGTTGTCATGATGTGTCTCGCTACGTTACCA 2355585 23 100.0 47 ....................... AAAAAAAGAGAATCTCATGCGGCACAAGTTGAGTAGTTACGTTACCA 2355655 23 100.0 48 ....................... ATATCATCGATGTTCTTATGAATTTCATCGATATTAGTTACGTTACCA 2355726 23 100.0 52 ....................... GCGCAATGGCAGCAACTATAATAACGAAAAAGCGGATGATGTTACGTTACCA 2355802 23 100.0 51 ....................... TCCCAATAATAGCCATCATATGGTCTATCAGACCATACTGTTACGTTACCA 2355877 23 100.0 48 ....................... AAACTTAAAGGCGTCTGCCAGTGCGTTGGCATGCTGTCAGCGTACCAA 2355948 23 100.0 51 ....................... AATGTTAAGCCGTAAACCTTAATCTGCTGTAAAACAGAGTCAGCGTACCAA 2356022 23 95.7 0 ...............G....... | ========== ====== ====== ====== ======================= ==================================================== ================== 8 23 99.5 50 AATCCCCGTAAGGGGACTGAAAC # Left flank : CTGAAACTTTTAAGTTTGTTAAATAAACTTTCTCCAATAGTAATGGTTCAATTACCAAAATCCCCGGAGCCATTAGACTCCTTTTAGAAAAAAGGGCGGGATATTTTTTGTAATGGCCGGTACAATTTTTTTCCTTTGTGTAAGAAACTTGAATCCCTGAGATGGACTGTGATGGCCTTTCTTGGGGATTTGTTCTGTTTGGCTCCTTCGTTGTGGTGCAGTGGTTTGACAAGGTACAGCGAAAAAAGTATACTTGAGATAAGTCAAGGTAATACTGACTTTATCTGACCTTTGGAAAACCTATTTCAGGGTCAAAAACCCCGTAGGTTTGAAAATTTCGAAAATGGCTACAAATGGCGTAACGAAGCGGATAAACGACACTGCCTGATTTTTATTTTTCACCCGGGTCCCCGAAAAAGGCGAAAAAAGCCTGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCTGGGAGCGGGTACTGGGGGACAGGGCTACGTTACCA # Right flank : CTAAGCACAAGAATTGCAAAAACAAAACGATAGAAGCGCGTCAGCGTACCAAAATCCCCGGATTTAATTAGACTCCTTTTAGAAAAAGGAGTTTGTATTATAGGGGACTGAAACTCGAGCACGTACTGGCATTCGACGTGCGTACCTCCCGTCAGCGTACCAAAATCCCCGGAGCTAAATGGACTCCTTTTTTAGAAAAAAGGAATTTGTACCATAGGGGGGACTGAAACATCCTTCTAGGCGACTAACCCAGGATTCGTGCCATAGGTCGTATTACCCCAATCCCCGTAAGGGGACTGAAACGCTATTCTCTCGTCTCGGCAGCTCATTTTTTCCGATGTTACGTTACTAAAATCCCCAGGTCTAATTAGACTTCTTTTAGAAAAAGAAATCTGTACCATAGGGGACTGAATCTGACGCTCTGATGTTTCTACTTTTGTCGTAGGGTATTGGCTGCATGCCTTGCCTGTTGGGGAGGGATATTCTTACAAGGCCCCGGA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 2405577-2406427 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084019.1 Megasphaera massiliensis strain NBRC 114414 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2405577 36 100.0 37 .................................... ATGAAGAAGGAGACGACATAAGGCAGTAAATTACGAA 2405650 36 100.0 37 .................................... CTGTATATGGATTACAGGGGCTTGGATCTTCTAGTTT 2405723 36 100.0 38 .................................... AGCCATCTGCTCCGCGCGAACGAATGCCTGATGAATGA 2405797 36 100.0 39 .................................... TGAGATCATTTCGACTTCAAAACCTTCAAATTTTACGTT 2405872 36 100.0 39 .................................... TGGCTCATCGCCAAATCTATTAATACTACCATCAAATCC 2405947 36 100.0 38 .................................... AGGAGGTACTGCCGTTTGCATACCTTTCGTATGTAGGG 2406021 36 100.0 38 .................................... ATATCATCCCATAGGCGATTCGAAATACCGGCTTCCTT 2406095 36 97.2 39 .....................C.............. ATGCCACTGACTGAACATCTTTCGGAACGAGACTTCCTG 2406170 35 88.9 38 T..-C.T............................. TGTTCAGACGGTTCTACACCAATATATACAGAGTTTCC 2406243 36 94.4 39 ...G.C.............................. GCGTACTCACGTTCTTTTGAACGCCGATTGTATTTGTCG 2406318 36 94.4 38 .....C.........C.................... GTACTGGTCGAAATACGACCAGAATGGACGAGCACCAA 2406392 36 91.7 0 ...G.C.....T........................ | ========== ====== ====== ====== ==================================== ======================================= ================== 12 36 97.2 38 GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : TACGCGTTCGGGTCTACGAAGATAAATAGAGAATACGACCATCATACACAAAAGCTGTCTCAGAAGAGGCGGCTTTTTGGCGTATAGAGGCTATCCTATGGCTCTATTGCGGAGTCCGGACGGAATGTTCACACCATTTCGAGGACGGTTCGCGGCACGGTACCGAAACACGATGAAGACGCAAAAAGAAGTCTTACAATCGATCATAAGTCCTTGCAGGGAAGCTTCGACCTCATGTTAGAACGGTTTGACAAGAAAAGACGAAAAACGTATACTTGAGATAAGTCAAAGTACTACTGACCTTTGGAAAATCGTTTTCAGGGCCAAAAACCCCGTAGGTTTGAAAATTTTTAAAATAGATATAAATGGCATAACCAAGCCGATAATCGACACTGCCTCAATTTTATTTTTCACCCGGGTCCCTCAAAAAGGCGAAAAAAGCCGGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCTGGGAGCGGGTACTGGGATACAGA # Right flank : CAAGATGACGGCATAACCGTCGAAGTCGAAGTCGTCGGCGTACCAAAATCCCCGGAGTTACATGGACTCCTTTTAGAAAAAGGAGTTTGTATTATGGGGGGCTGAAAACTGAGTCTTGCATGAGAAAAGCCGATACCGTCATCTATCTGGATGCTGGTGTCGGCTTTTGTCATGGGAGTTATTTTTTAGGTATCAAAAATGTGCGTACTTGTAAATTCCATACCTATAGCTATAATAAGGATAACCCGATGAGGGGAATCGTTATGCGAAAAGGAGACTTGAACATGGAATTTGAACAACTGATGAGAGATCGTTATTCGGTCCGTAAATTTTTGGATAAAAAAGTAGAACCGGGACTCGTTGAAAAGCTGAAGGAAGCCATTATGCTGGCACCGAGTGCCGTAAATCGCCAGCCTATCCGGGCCTGGGTCATCGAATCGAAAGAGAGACTCGAACAGATTAAGGCCATTACGAAATACCACTTTCAGGCGCCCCTGACA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 2407901-2408155 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084019.1 Megasphaera massiliensis strain NBRC 114414 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2407901 36 100.0 37 .................................... CGTGTTACGGGCAATCCACCAATGGATGGCAGGATTG 2407974 36 100.0 37 .................................... TTGATTCCGGTAAACGTTGACGGATTTTCGAAGCAAT 2408047 36 97.2 37 ...A................................ CAACGAATTGCAGGACTATAGTTGCGGTCTGGACCAA 2408120 36 97.2 0 .G.................................. | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 98.6 37 GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : TCTTGTCGTCCTTTAGCCATAAAGGCTTATGTAAGAAAAAGAGAAGCAGGAAACTCTTTGCCGTTGTACCTCCCTAAGAGCATGGATTGAAATAACCTTTTTCTTAAAGGCGGGATACGCTAGAGATGCGAGTTAGAAGGTCGGTTTAGAGATGGGGATAATGGCGGCCAAGATCCCAAAAGGCTTCCGGCGCCTGATTAGAGGCATCTATGGAGAACATCGAGACCAATCCCTTCGCCGGGAAGAGTTTGACAAGAAAAGACGAAAAACGTATACTTGAGATAAGTCAAGGTACGACTGACCTTTGGAAAATCGTTTTCAGGGTCAAAAACCCCGGAGGCTTGAAAATTTTAAAACCGCGAAAAACGGCATAACCAAGCCGATAATCGACACTGCCTAAATTTTATTTTTCACCCGGGTCAGCCAAAAAGGCGAAAAAAGCCGGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCAGGGAGCGGGTACTGGGAGATAGA # Right flank : CTTTATGAGTTGAGCGTTACAGTATGACGTTTGGTCGTCGGCGTACCAAAATCCCCGGAGTTACATGGATTCCTTTTGGAAAAATGAGTTTGTACCATAGGGGGACTGAAACGCGGTTTCTAAATACCTTGGACGGAGGTTTGTTGACGCGTCGGCGGGCGCGTAAAATTGAAGATGGCATGAAAAAACGGTACCGGCATCGGTGAAGGATGTCTGGTACCGTTTTTGATGGTGGGCGTCATGTTGTGGGAGTCCGAAAACGGACAGTGCCGTCTGTGCCAAGGGGGACATGAGCCGTCGAATTTACAGCCGAATATGGGCTCGGGCTGACGTCTCGGAAGGGGGCTACAGGGCTGCAGAAGGTTTGAGGCCCTTGTGCGTGCTCGGGCTCGTCTGATTCCTTCGGTCCTTAGAAATGACGGCCTCTTTGTGAGGATGAAGGAAATGAGAAATATTCCTCTTTTCTTGATACCATAAGGTATCTGACTATATGAGTTTAC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 12 2432894-2433338 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084019.1 Megasphaera massiliensis strain NBRC 114414 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================== ================== 2432894 36 100.0 37 .................................... TGGCTACGTTCTACGCAACGGAAAATGGCGATATCGG 2432967 36 69.4 78 .....................GGTCTAA.TA..CT. CTTTTAGAAAAAGGAGTTTGTACCGTAGGGGGACTGAAACGCGACGCCCAAAATTGTCTGCCCGGCCTTGATGTTAGC 2433081 36 97.2 38 ...................T................ TTATCGCCGGCGTTAGAATAGGCGATTAATTTTTCAAT 2433155 36 97.2 37 .....G.............................. CGTTCCGGCATCGCCTCAGCGACCATCCTGGATACGA 2433228 36 94.4 40 ...G..........................G..... TCCACGATTTCGAAGTTCTTTCCTAGGACCCATTCGAGTT 2433304 35 86.1 0 ..T.-..A...TT....................... | ========== ====== ====== ====== ==================================== ============================================================================== ================== 6 36 90.7 46 GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : CCCCGTAAGGGGACTGAAACTGTACATAACAGTAGACTCTCAACTGAATCGTCATACCGTCGCATCATCTAATTCCCCGGAAGGGGACTGAAATCTTGTTTTATGCGGAAACCCTGCAGACGCGAGTTAAAAGGCCATCTACGGTCGACTCATATAAACAGAGGGCTAAGAGGGAGAAGGCGCTCTTGCGCCCGATGAGAGGCATTTGCGAGGACATTCGAAGATGAGCCCTTTTCCGAAATTCGTTTGACAATAAAAGTCGAAAAACGTATACTTGAGATAAGTCAAAGTACTACTGACCTTTGGAAAACCTATTTCAGGGCCAAAAAACCCCGTAGGTTTGAAAATTTCCAAAATAGCTACAAATGGCGTAACCAAGCCGATAAACGACACTGCCTGATTTTTATTTTTCACCCGGGTCCCCGAAAAAGACCAAAAAAGCCGGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCTGGGAGCGGGTACTGGAAGACAGA # Right flank : CCGCCAAACAAGTTTAACTAGCAATACTAATAACGCCCACATCAGAGTACCAAAATCCTCGGATTTAACTAGACTCTTTTTAGGAAAAGGAGTTTGTACCATAGGGGGGCTTAAAACTAAATATTGCATGAGAAAAGCCGGTACAGGGCATCTGTCAGTGATGTCTTGTACCGGCTTTTGTTATGGGGGTTACCCTGTTGAGCCGGCAACGCCTGCGAAACGATAATCTACTCGTTATGCGGGTGGGGTCCCATCGTTATAAAAAAATCACCTTTCCCGAATAATAGAGGTGTCTAAGCCACTATTACATTAAAAGGAATGGTGATTGATATGGCAAAGAAAGTCAATGACTTAGCCCATACGAAATGGCTGTGCAAATATCATATCGTCTTCAGACCTAAGTATAGACGAAAATTATTTTCAATCCATATAGACGTGATTTGGGAGAGATACTCCGGCAATGGTGTAACTATGGGGGGAGATATTGGAAGGGCATCTCA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:-0.74, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //