Array 1 27-1194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYW01000040.1 Pseudomonas aeruginosa strain AZPAE14379 AZPAE14379_contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27 28 100.0 32 ............................ GCGTCCGGTCGGGCGGGGTCCAGCCCGGTGGC 87 28 100.0 32 ............................ GTGGCACGACCGTGACCTGGGATGTGCCGACA 147 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 207 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 267 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 327 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 387 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 447 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 507 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 567 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 627 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 687 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 747 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 807 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 867 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 927 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 987 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 1047 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 1107 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 1167 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38022-38888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYW01000009.1 Pseudomonas aeruginosa strain AZPAE14379 AZPAE14379_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38022 28 100.0 32 ............................ ACCCAGGACGCCATCCGGCGCATGAGCGAACG 38082 28 100.0 32 ............................ TATCCGATGAACGTCCGCATCCCCGCGGCTGT 38142 28 100.0 32 ............................ TTGCCCGCTCAGCGCTCAGGAACGACTGACCC 38202 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 38262 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 38322 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 38382 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 38442 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 38502 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 38562 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 38622 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 38683 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 38743 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 38802 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 38861 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48146-47417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYW01000009.1 Pseudomonas aeruginosa strain AZPAE14379 AZPAE14379_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48145 28 100.0 32 ............................ TGGATCAGGTCGCTCGACTGCTGGAAGAGTGC 48085 28 100.0 32 ............................ TTGACCGGATCGGCCACGGTGCGGGCGGCCTG 48025 28 100.0 32 ............................ TCGGGTGCCCGCTGGTTTCCCGAGAAGATTGC 47965 28 100.0 32 ............................ TTGCGGACCAGCACACAGAGCAGGCGCAGTCC 47905 28 100.0 32 ............................ TTGTGCCAGGAACCCAGGCGGATCAGTTCAGA 47845 28 100.0 33 ............................ CTGAAACAGCCTCCGCCGGGGAGTGTGGGGCAG 47784 28 100.0 32 ............................ CTATCGGGAAGGTGGCCGCTGGCTCTGCCGTC 47724 28 100.0 32 ............................ ACATGCGTAGCGTGCAACACCGCTCGCGACGC 47664 28 100.0 32 ............................ GCGCAGTAGTGCGTCTCGCGTGTGATGCCGTG 47604 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 47544 28 85.7 8 ...................C..GT.G.. CCGCACGT CCTT [47519] Deletion [47509] 47504 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 47444 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 30 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GTGTAGGCAGCTAAGAAATGGCTGATCAGGCTCCAGAAGGCGTCATACA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //