Array 1 573175-573323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKNN010000022.1 Providencia stuartii isolate MGYG-HGUT-01307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 573175 28 100.0 32 ............................ TAAGCATCCCTACGGGCTACTAAGTCGCTATA 573235 28 100.0 33 ............................ TGAATAAACATGCCGTCCATACTGTTTTCTTCT 573296 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAATCAGCGCTAGATAAAATCTCAAATATTGAGTCGAAGCAGGGGTTGCAGCTACAAGAAATTGATCAGTTAAACTTTCTAGCAGATACAAGAAGTATTCAAAATAGTCAGCGCATAAGTGAGTTGTTGGATACAAATTGGACTGGAGTCACAACAGACTATTATAAAGAAATGGCTATGTTCCAAGCATCGCAAGATATTTTTAAAGATTTAAATAGCATGTCATTATTTGGTGGTCGTTAAGACGTGTGCCAGTCTCAACTCATTTGAGGCTGGCGCAATTACCGTATCGTTATTTTTCCCTACAATTATTTTCTTTTCTCTTATCCTATATTGCATTTCTCTTAAGATGATTTACTCTTTATTTTACCCTTTGTTTTTGCTCTTTAAAAAATTAGCTAACAAAACAATAAGTTACTAAGCGTCATAAAAAAGAAGGTATTTTTCTAAAAAATAGGCTAACGAATTGTTATTTAGGGATTTTGTTTGGTAAGCTAATT # Right flank : ATGAACGTTTCCAAAACAAACGCATTAAGCAAATTGATGAAGAAAGTAAGTCAATTTACTACGAAAACTACGAACCCTGCGACGTTCCTGATTCACGTTGGATTGATATGCTTGTCGAAATGCCAAGTAATTTAATCTACAATCAGCGATAAGCAGAAGCAGAGCGATTAGCAAAAGAAGCAGCAAAGAGAGATGCTAAGCTTGAAGCTGCATCACAGATAGAGGACAATAAAAATTAATGCGCCATCTCGAGTAGTTGGCGCATGTGTATATTTATTCTTTAGGGTTTGAGCCAAATCGGTTGTTACCTGGGGTTCCATCAAGGCATGTAAACACAAAAATGACAAGACCACCAAAAGGTATAAATGTGAGCAAATACCACCAACCTGACTTATCTATGTCATGTAAGCGCCTAACAGTTACTGCAAGGCTAGGTATTAAAATAGCTACGCAATAAATCATCAGGAGGACTAGAGCTACGATCCCCAAACCATTTATAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 586499-587426 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKNN010000022.1 Providencia stuartii isolate MGYG-HGUT-01307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 586499 28 100.0 32 ............................ CAGATAAGTGAGGGCAGCAAATGCACGAGGAT 586559 28 100.0 32 ............................ GCAGAGAATGACCGTAGGAAGCTGGCGCAAGG 586619 28 100.0 32 ............................ AAACCTGACTTTGTACTCCTCAGCCATGCGAT 586679 28 100.0 32 ............................ ATCGGGCAATGAACGGGAAGCTATGCCGCTTT 586739 28 100.0 32 ............................ TTGCCAATGGCTGTGCGAATATCGGTAATCAA 586799 28 100.0 32 ............................ CATTTGCTGGCTAGTGTTTCAGGTATTGAAAT 586859 28 100.0 32 ............................ TTCAACTCAGGGATGATCTGGAGACAATGTGC 586919 28 100.0 32 ............................ CATTGTACGCTTGCATCAGAATGCCATGTTTC 586979 28 100.0 32 ............................ TGCAATAATGATATTACCCACACCGGTATGTG 587039 28 100.0 32 ............................ AGTCAAATGAGGGCAGCAAATGCATGAAGATT 587099 28 100.0 32 ............................ ATCAAGCAAGTTGCCCGTCCTTTTATTCGTCC 587159 28 100.0 32 ............................ TGTGCCTTACCTTGAGTTTTTTAAGGGTGATC 587219 28 100.0 32 ............................ ATATTAAGACGCCTTTATTAATTCATCAACAC 587279 28 100.0 32 ............................ ATCACCGCCGCGCCCATCTGGAACTAATTCAT 587339 28 96.4 32 ...........T................ ATATTCCGTTCCGTTGTTTGATTGACATAATC 587399 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTCAAGCGGTGCCAGAGCATGCCACGCCAATTAGTTATGTGCGTCAACATGTAAAAGGTGCAAAGCGTCTTGAACTGGATAGGTATAAGAAAGCTCAATTGTATTCAGTAAAATCAGGGCAGCCTATTGAGGTCTGTTTAAGCGCAATAAAAGAGCCTCAAACGCGTAGTCGTTTACCTTTTATTTGGATGGAAAGTCAGCAAACAAAGTCTAAAACAGAAGGCGATGGGCATCGTCCATTTCCACTCTTTATTCGGTGTGTTGCTGCGAAGGAAGCAAAGGCAGGCACGTTTAATTGTTATGGGTTAAGTCAGTCTATGGGGAAAGGCGAAGAGGTTGCCACCGTTCCACATTTTTGACCTTTTTTACCCTTGTTTTTTTGCTCTTTAAAAATTAAACATAAAAACAATAAGTTGCAGCAGACTGTAAAAAAGAAGGTATTTTGATAAAAATAGCTTTAACTGTTTGTTGTGACTTATTTTTTATTTGATACGCTATA # Right flank : AAATGAAACATCTGCTTGATTTTATAATATTTTTCAAGGTGACCATTTTGGCTTGTTCTATAAAATACAAAGGTAGCTTCTAATTCTTTATTTTCGTCCAAAGTCACCGATAATAAAGGCGAGGATTTATCAATCGGCTTTGTAAATACAACTGGTTTATATGAGGCACTTTGCTCACGAAAAGAACCATATTAGTTAGCCCCAATCACTTAGACTTCATCTTTATGACCAATTTGATAACGATTATCAATTGAGTTCTGAGATAAGTATCCTACTGAAATAAAACAAATATTTCCTTGGTGCGAGTTTGAAGTTGAGTTAAGGCTTCAAGTATATCATCATGATTGAGTGTATGTTGTGGCTTCTTTTCTGTCGGTTAGATGGCCCATTATCCGGAGGAACACCTTGAGAACGCGTATTACCATTTATCCTGAACCAATTTTATCAATTCTAATGTGCGGCTTAAGCGTTTATTATCAACAATAGCCCCTTGGTCAACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 660236-660503 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKNN010000022.1 Providencia stuartii isolate MGYG-HGUT-01307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 660236 28 100.0 32 ............................ TGTTGCTGGTTCAGGATGAATTTTATCGGCAT 660296 28 100.0 32 ............................ TTCTCTATGGTGCCTAGCAATAATCTGTTCCA 660356 28 100.0 32 ............................ TGATACACAAACCATTCGTGATTTAGTGTTGG 660416 28 100.0 32 ............................ CGATAACGGTCATGTTCATGCTGATTTTAAGT 660476 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCAAACGACAAAAGGAATTAGGTGTGACTAAGATAGAGTTATTTCTTGGTGAACAGGGATTAGAGATTCTCCCAAGAAAGTGCGTAATATGTAGGTCAGGCAGGGAGCAGTACAACGTAGCCAACTATCTTTTTATGTGAGCATTGATGGCTGTTCATTGTGTCCGCTCGGTAGCGCTGAATAAAAAATGTGTAAGGGAGGTAATGATCAGCTACTGATAGTTATTTAAGTGAGGCTCATAAATGCTGGGTAACTCATGGGTGACACGGGCTAAAATTGATGTCACAAAGTCTCACAGATAGTTCAAATTTAACGTGTCACTATTAATTTTGATGGGTATAGAAGATGCACTGTTTTCCTCTTTTTTACCCTTTATTTTTTCACTTGAAATTTATTGATTAAAAATCAATGTGTTAAGAATCACTGAAATATAGAAGGTATTTTTCATAAAATCAGATGTAATTTATTGTTGAACATGGTTTTTTTCATGATAATTTATA # Right flank : ACAGATAGCAGTGCGTGTTTACGTTAAATTCCTTGCTTACTACACCGATAATGATGATGCCCTCCAGTCAGCTACAGATGTTTATTTAGACGGTGTAGCACAAAAACGCGCTCACAATATCCCAGCAACCAAATCCTTTGATGCTTTTGAAATGCCAGACGGTAGCCTACGCCGTGTCGCTAAATCAATTAGCTTTGCAAAAATGGATGATCTAGCCTTTGGCGAACTCTACAAATCAACTCTCGATGTGCTCTGGAACTTCATTCTATTCCGTAAATTTCCCACCCAACAAGCTGCTGAAAATGCAGCTGGCCAGCTATTGGATTTTACCTAGAGGCAAGACCAATGATCCAAAAATCGAAGATCAAAGAAGAGAAGCAGTGGTTATCAGATGTAGCCGAACTTGGCTGTGTTTGTTGTAGAAACATGGGATATGGGGCAACTCCTGCGGAAATCCATCATACACGAACAGGGCAGGGTATGGCGCAACGAGCTAGCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 680582-681269 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKNN010000022.1 Providencia stuartii isolate MGYG-HGUT-01307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 680582 28 96.4 32 ....................T....... GCTGTCGGCTTCGTTCCCATCGTTTCAAGGTC 680642 28 100.0 31 ............................ ATAACTAGTTGGCGCACTGTCATGCTGAATT 680701 28 100.0 32 ............................ ATTGAGCGCAAAGCATCTTCTGCGGTCATGCT 680761 28 100.0 32 ............................ GCAGTTTTAGCAATCATCTCTATAACTGCATT 680821 28 100.0 32 ............................ ATAGGTCTAGGCATACCCTCTGGTGTAAGAAT 680881 28 100.0 32 ............................ AGCGTTTGACCATTTTTCCCCTGTTGGCTTAA 680941 28 96.4 32 .........T.................. GGCATCAACTGGAACAATCAGTACCATGACGC 681001 28 100.0 32 ............................ ATAAACATTTGTAGTTCTCCGCGCTTACCTGC 681061 28 100.0 32 ............................ TAACAAGAAATGCCGCGTGATCCCGTTCCAGT 681121 28 100.0 33 ............................ CTGAAACTATCAGCTATTTAAAGCGACAGGGAT 681182 28 100.0 32 ............................ ACGACTGTGGAGATGAAACAAAAATAATCCAA 681242 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.1 32 GTGTACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGATGGGTTCTTAACATTAAGAACAGATAATATAATTTCTGTCTCATCAAAAGAACCGGAAGATAGTGAGGGAGAGCCCACTGAATGGGGGATAGGTGCTTTGCATTTAGCACCAAGAAATTCAGATCAATTTAATCAGCTAAAAGAGATCCAAGGTAAAAAGGTAGATATCACTTGTGACCTATACCATGCAACCAATATTCATCACAAAACTCCGGTTCTTTGCAGTGTTGAACATTATGTTTTGGCCAAGTAATTGGCAGTATGGCATAAAACTGAAAACATAAAGTATCGTAGAAAAATGAAATAGGGCAACCTGCTATTCGTTTGTGATGAGTGACTGAAGGTACGATATTTTTATCTTTTTTTACCCTTTATTTTTTGCTCAAAAAATTTCCCTTTAAAAATAATAAGTTATATTATGTCGTAGAAATGAAGGTATTTTGCATAAAATCGTTGTAATTTATTGTTGCGCTAAGATTTTTTCCTGATAATTTATA # Right flank : ATTGGCGATATCGCACTCATGGATGATTTTTTGGTGTACTCCGGATGCAACTCCCGCTATCGCTGGCAACACCAGAGGAAATTGTAAAACCAAAACAAATAGTGAAAGTAAAACAAATTATGCGGGAACCATATATTTGACATAACCTAAAACAGCAAAGTTTATCGATTATATTCGTGAAGCATTACACCATCAACATGCAAAAAGGCATCTCTTAGTATTCCCAATGATTGAAACTCATTTAACTTATGATAATACGTCGACTCTACCTGTTCACGGGTAAGGCCTGTGAGGTAATCACTTTGTTGATTTGTTTCCCAATAAATCTCACCTTTTCCTTTTATGAAGTATCCTCTTAAAAATCCAGGCCATTTATCACGCATGTTAGATATCAACAGAGAGTGGCTATCAGGCTGTGTTGCTTGAAATTCATGAAAAAAATCACCTCTAAAGATAAAAATATTATTGCATTTAGTACATTGATAGATATCTCTTACATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 687110-687316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKNN010000022.1 Providencia stuartii isolate MGYG-HGUT-01307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 687110 28 100.0 32 ............................ AGAATTGCTAATGACCTTCTTGAGGCTGCTAT 687170 28 100.0 32 ............................ AATTTCAGATGAATCAAATTACATCATCCCTA 687230 28 100.0 32 ............................ ATTGCTATAATTCGACCGAAATCATCTGGGTA 687290 27 89.3 0 .C........A.............-... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTTATATTTATGGATGACGCTCTAGCTAAAATATAAACACTATAGAATTTCTTTTCGATAAAAATCATTTGGGTAACTCTATTTTAATGCCATTAGTGTATAGCTGATGGTTATTTTATTTTTAATGGTGATGCAGAAAGGGCTAGGGGATAATTGGTCAATAGGTATGTTTAACTTTACTTATTTGGTTAACCGGGATTTTATTTTTTCTAAAAGGTAAAAAGCGACTTTCAGCTTAACTAATGATTTTATAGGGCCATCAAACTATCTGTTAGGTGTGTGTGAAATATTTATTTTAATAGGTATTTAATGTATAAAAGGTTGGGTTAATTTTTTCGTCTAATCAGCAAGTGATTTTCCTTGTTTTTTACCCTTTAAATTTTTAAAGTTTTTATATCCTTTTAAAACAATAGGTTATGTTACCTGATAAAAAAGAAGGTATTTAAGGGGAAATTGTTATAATTTACTGTTGCATAAAGTTTTTTTACTGATAATTTATA # Right flank : AATACGTTTTAATATAACTTAAAATTTCTACCTTATCCTTTCTAGCACACCCTCAATAAGATTTAGTGATTTTCACTTATCATGCAGAATAAAAGACTGCTATCCTTGATACGAAGTCAGAATAAGGCTTATGATATTTTGTACATGGAGGCTATTATAGGAATATTACCTATGGTGAGGAGGGGCGTTGATGTGTATTTTGAAAATACCAGCTCGGTGGAGGTATTTATATGAATAAGCTTTTTCGAATGTGCAACCTATTGCTATTAACTGCAAGCTTCTCAGTGGTTTCTTTATCTTCCTATGCAGATCCCAATGGCGGTCATGGTCATAGGCAAGGAAAAGAGCATCAAAAAAATAAGCCTAACAAAGGTCATAATGGTAACGGAAAAGAAAAAGCAGATCATTTATCCTTAAATAAGAGTAATTCAATATCAGTATCATTAACTTACAATGAAGCAAGAGCACTCGCTTTAGACAGTGGTATTACAGGCTATCAC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 2035016-2034748 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKNN010000022.1 Providencia stuartii isolate MGYG-HGUT-01307, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2035015 28 100.0 32 ............................ TAGAAGCGGGATTTCATATCTTCCCGCTGTAC 2034955 28 100.0 32 ............................ ATAAAGCATGGGGAATCAAGGAAAAAGGAGAG 2034895 28 100.0 32 ............................ AGAATTAAAAGACACCACTGGTAAATCACTGT 2034835 28 100.0 32 ............................ TACAGGAACAGTAACTAAACTTAGGATATAAC 2034775 28 89.3 0 .................T...C..A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTGTACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGTTAATGTTTATCAGCGACATTCTTTGTTGGAATAGACCAAATGCCCTTATGGCAAGTAAGGCAGTATTTTTGATTATTTGTAAAGTCGTCATGGCACGGTACACAAAACCAATCCATAACCTTTAAAATCGGTAAAACGGAATGAAATTACTGATTAAGTTTATACGTTGAATGAGTTAACAATAAGGGCCATTTTAATAGATACATTAAAATGGCCCTTATTGTAATAAGTTGATTAATCAAGCGAAGGTTAAAATGTCACTATTACTTTTGAAGAGATTGTTTTATCCGCAGCTTCTAATAAGGCTCTTTCTATCTCTTTTGATGTAAGAAGGGGGGGAAGATGCGTGATAGTTATCTTATTTTACCTTCTATTTTTATTGAAATTTTATTCTGTTTAAAAACAAAGTGTTATGATACCCTCTAAAAAATAAGGTATTTTGCACAAATTAGCCATAATTTATTGTTGCACGAAGGTTTTTTCCTGATAGTTTATA # Right flank : TGATAAATGATTATCCTGTGTGCTTTCCAATAAGCTGCACAGGCTTCTTTTTTCGCTATTTTAAGATTAATAATTAGATTATATTTATTGAGATTTCTAGTTTATTAAAACAGTGCAATTCCTTTAAATAATAAAATTAATCGGTGAGGCAGGATGAAGCTGCTAAATAAAACAATCTATACGCTTATTGTGGCATTTATATCAACAGCGGCAATGGCAGAGGAGTGTATAGGTGATAGTACCTATCAAGCATGTACAAGATCGAGTACTAATGCACAAGGCGATAATATTATTGAATCGTATGATACTGAAGGTAACTCATATTCAATAACATCTGGCTCAAGAGACTATGCGGATGGTTCATCTGAAGTCTTTTCAGTTGATAGTGAAGGCAATGAATACTCGATAAAAAGTTGGTGTGACAGCTCTGGATGCCATACATCTGATAGCGAAGGGAATACGTGCACAATAACAAATACTGGCGAGATGATAGGCTGTTA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //