Array 1 2738920-2739067 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIA01000003.1 Xanthomonas albilineans strain GPE PC17 Xal-GPE_PC17-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2738920 28 96.4 32 A........................... AATCGCCGCAGCGCCCGCACTGACCGATGTAC 2738980 28 100.0 32 ............................ TTCGAGGCGAAGCTGAAGGGGGATGCGTTTCA 2739040 28 89.3 0 ........................TGC. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : ACTGACGCATTTGACGCACTACATCGTAAGTCCTACGCGCGCGTACGCGCGCACACACCTCATGAGGGAGTTTCGATGTGACCCGTCCAATCTGTCAGTCCCTCCCGACTTGGAGCACTTGACGATGAACACGACGATCCTGGCCCTGGACCTGGGCACTCGCACTGGGTGGGCACTGCAGCACTCGGATGGCACCATCACCAGCGGCACCGAGCCCTTCACCCCGCAGCGATTCGAAGGCGGCGGCATGCGCTTCCTGCGCTTCAAACGCTGGCTCAACGAAGTGCTCTCCACCGCCAATCCCATCCACACGGTGTACTTCGAGGAGGTGCGCCGACATGCCGGCGTCGATGCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTGGACAGATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : AATGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCGCGCGTGCAAAATGAAAAACTTTTTTTGGACAGAACCGTGTCAGAGCTAAGCGTTGCAAGGGACTACAAGGCTGACTTGGCGCAGATCGAACAGATCGATGCGACGCCATGGACTGCGGCAAGTCACGCGGACATGACCTCAGAACTGAAAACCTATGCGCGGTCGTAAACCTCTGCCTGTAGCAATCAAGAAGATCAAAGGCACGCTGCAAAAATGCCGGACCAACCCGCATGAGCCCCGTCCCGACGGGCAATTGGGTGAGCCACCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACGTATGCGGTAGAGAACGCACCACTCGGTTTATTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGCGAGGCGCTGGCA # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3294438-3296655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIA01000003.1 Xanthomonas albilineans strain GPE PC17 Xal-GPE_PC17-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 3294438 31 100.0 33 ............................... CGCATTGACTCCCAGCGCGCATACGGCACTGCA 3294502 31 100.0 34 ............................... CTCGCGGGATACGCCGGAATAGCCAAACCCCTTG 3294567 31 100.0 33 ............................... TGGATCCGCCGCATGTCCGAACAGCACGGCATG 3294631 31 100.0 35 ............................... TTGGTAGCTGCGCGAGACCTGTTCGAGCACCATGC 3294697 31 100.0 35 ............................... TTCATAACGGGGATGCTCCTTTCAGTGTCAGATGG 3294763 31 100.0 35 ............................... CGCAATGATCGTGCGGACGCTGAGGCGATGCAGAG 3294829 31 100.0 36 ............................... TTGCGCGAGCTAGCCTTCTTGGCGCTCGCGCTTGGG 3294896 31 100.0 37 ............................... GTTTGTCGTGCCAGCAACGCTTGGCACTCGGTACGGG 3294964 31 100.0 36 ............................... TTGCACAGGGGCATTCGCCCCGACAATTTCATCGAG 3295031 31 100.0 35 ............................... AGCCGTAAGCTGCGCGCCGTCGTAGTAGTCGCGAG 3295097 31 100.0 34 ............................... TACGACGTATTGCCTTCCCGACTCAATCTGTACG 3295162 31 100.0 35 ............................... GACCTTGCTGGCGTACTCATAGAGATTGATGGTCG 3295228 31 100.0 35 ............................... GACTTCATCCTGATTGCCCAGCAGGGTCTGCAACT 3295294 31 100.0 35 ............................... GGTATACAGCTGCGCCGTTGGCATCTTGGGAGTGG 3295360 31 100.0 35 ............................... TTGGAAGTGCTCGGTATCGCCAGCGGCGAGGGCCT 3295426 31 100.0 34 ............................... TCCTAACCCTGTTGCGTCCGGACGTGATCTGACG 3295491 31 100.0 37 ............................... AAGCGATCCGATGCGGTCGGCCATGCCGGCCTTGACG 3295559 31 100.0 35 ............................... CGACCGAGACCGACTCGCCTTCCAGCCCGCGCAGG 3295625 31 100.0 34 ............................... GTGCTCCTCGATGACGGATCCGCAGTCGCTGCAG 3295690 31 100.0 34 ............................... TCCTAACCCTGTTGCGTCCGGACGTGATCTGACG 3295755 31 100.0 38 ............................... GCATGTGCGAATGCACGACGGTCGGGGCCGAATGATGG 3295824 31 100.0 36 ............................... GCCTAGACCTCGGCAAAGAACCCGCCTATGAGCCGG 3295891 31 100.0 36 ............................... CTTTGGAAATGCTCACCCACCCCATGCGCTATCTGG 3295958 31 100.0 35 ............................... ATCCTGGCTATTGTCGCAATTGTCAAGGGCGGCGC 3296024 31 100.0 35 ............................... GAGTTCAGCCGCGGCCCGCTGGTCTGGCGTTACAG 3296090 31 100.0 34 ............................... TCATCTGACTCTCCCTCACTGTTCAAATGGGCAA 3296155 31 100.0 34 ............................... GTACTGATTCCATCCGGGCTTGCTCCTCGTGGGC 3296220 31 100.0 36 ............................... AACGGTAGGAAGGCCGCTGAGGACTGGGCGCGCGCG 3296287 31 96.8 38 ........T...................... GATTTCGTCCTCTCCGTAGCTGTATGGGCTGATGCCAG 3296356 31 100.0 37 ............................... ATGTACTACGTACACGGGAGGGCCATCGCATGAGCCG 3296424 31 100.0 37 ............................... GCCAGTCAACGTGGAGAGATTCACGGCAGCGCGGCTT 3296492 31 100.0 37 ............................... GGCACAAGCGTCCAGCCATCCGGCACACCCTGCAGGC 3296560 31 100.0 34 ............................... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3296625 31 90.3 0 ............A......C..T........ | ========== ====== ====== ====== =============================== ====================================== ================== 34 31 99.6 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATAAAATGGCAGTCGTCACATGATGGTCTTGGTCAGCTACGATGTCAGCACTAGCTCACCGGGAGGCGACAAGCGCCTGCGCAAGGTAGCCAAAGCCTGTCGCGACCTGGGTCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGACCCGGCGCAATGGACCGCACTACGACAACGCCTGTGCGACCTGATAGACCCGGACATCGACAGCCTGAGGTTCTACCACCTCGGTGCAAAGTGGGAAGCCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTTGACCTCAAAGGCCCACTGATCTTTTGACGCGAACCCCAAGCGACCGGGAATTCACCCGCAGGTTCGCAAAAAATGCAAACTATTGATATAAAAAAGAAAGCCGACTCTCAGACCCTCCCCCCCCGGACACAAGAGCATGCAATCGCCCGGTCGAGATGCGATTCGCGAAAACAGGTTTTTTCCTCAAGCACACGCCAGGCTTTATCCTGACGGGG # Right flank : CGAACACCTTGGATTACTCCACCGTCACCGACTTAGCCAAATTGCGCGGCTTGTCCACATCGGTGCCGCGCGCCAGCGCAGTGTGATAGGCAAGCAATTGCACCGGCACGGTGTGCAGCACCGGGCTGAGCAGGCCCGCGTGACGCGGCGTGCGAATCACGTGTACGCCTTCGGATGCGTGGAAATTGCTGTCCTGATCGGCGAAGACGAACAGTTCACCACCGCGTGCACGCACTTCCTGCATGTTGGATTTCACCTTTTCCAGGAGCGCATCGTTGGGCGCGATCACCACTACTGGCATGGTCGCGTCCACCAACGCCAATGGGCCATGCTTGAGTTCACCAGCGGGATAGCCTTCCGCATGGATATAGGTGATTTCCTTGAGTTTGAGCGCGCCCTCCAACGCAATCGGATAATGCAGTCCGCGACCGAGAAACAGCGCATTGTGCTTGTCGGCAAAACGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3479160-3479017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIA01000003.1 Xanthomonas albilineans strain GPE PC17 Xal-GPE_PC17-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3479159 28 85.7 32 C.GAG....................... TATGATTGTCAGATCGCGTCCGGACGTAACAG 3479099 28 100.0 27 ............................ AGCTGAATGAGCTAATTGGTTCGTTCT 3479044 28 71.4 0 ...A.................CTGCGGG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 85.7 30 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TGACCCGGCGGGCCGCGTCCGACAGCCAGGTGGCGTAGTCGTACTTGGAATCTGTGTCGCTATCGCCCTCATTGCCCTTCAGCTTGGCCTCGCGCCGCGCGTCGATGAACGCGGCGATGGCCGAGCGGAAGCGCTCGGAGCGGGTGAGATGTTGCGGGTCTTCTGTCATGTGGAATCCTTTCGTTCGCTGGAGTGAACCTGCATGTAGAATCCCCACGGCAGCAAGCCACCGTGGGGTGTGGGAGGGGTATCCCCTCAAACGGCTCTTCTGAAAAAGTGTCGTGAGAGCACTTCCTGCATCCTTCTTTGCACAGCAGTCCTTTGTGCGTAGGTCCGGGTTCCAACCGGCTTTGCTGCTTCGGCCCGTCATCGTTCACAGCGATGACGGGTTTTTTTTAACCAGCTGTATGTGATAATTTTGTTCGTAGGATTTTATGGCGCATTTTGCTACTCTAGCCAAAATTTTGTGAAATGCAACAACATTGATAGCGGGCTGATTT # Right flank : CACGGAAGCCCTTCTCATTCCCACGACTTGAAGCCAAGTAAAGGGTGATACCCCCACTTCTTCCCGCCCTTGCCCTCAGGCACGTTCACCGTCGCCAGCCGCTTGGCACAGTCCTGCAACGACAGGTCGAGCTGCTCGGCCTGCTCGGTGAGCAGCGTCATCAGGTCGTATTCGCCCCAGGGCGCGATGCCGGGACCAGGTTCGAGCGCCAGCGGCGCGCACGCACTCTGTTCCACGACCGGGTAGAGTTTTTTGTCGCCGCGATGGTCATCGTCGTCTTCGATGCGATGCAGCACCACGCGCTCCTCGTGCTCATCGGGTAGAAACACCAAAGTGGCCGTTGGCCTCGTGTCGTGACGGAACGGCTGTTGTTGCGGCAGTACGCCGGTCAGCATGGCGTGCGGGTATTGCCATGCGCATGCCGCATCCAAGGAGAACGGCGGGGCGCTGCGCCGGGATGGCGGAGCGGCCTCGCGCGATTTGGGCAGCATGGCCTCGCT # Questionable array : NO Score: 3.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:-1.5, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3483620-3485027 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIA01000003.1 Xanthomonas albilineans strain GPE PC17 Xal-GPE_PC17-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3483620 28 100.0 32 ............................ AACGCCAGCGGCCAGATATACAACTTCTTGCA 3483680 28 100.0 32 ............................ ACATGGCCCGGCTGCGGGACGCCGGCAACGGT 3483740 28 100.0 32 ............................ ATCTTGCTCTTGGGTGGGCGGCGCTTCTGGCT 3483800 28 100.0 32 ............................ TGACACTTAGTTAAGCTTTTCATGGATCACTC 3483860 28 100.0 32 ............................ CTACGGCGACGATCAGCGTCGTGGCTTGTGGC 3483920 28 100.0 32 ............................ ATTGCAAACTATCAAAGCGAGTTTTCTTCTTA 3483980 28 100.0 32 ............................ ATCGTACCTCGCTCAGGAGGTCGGCGATGCGA 3484040 28 100.0 32 ............................ TACGCAGACTGGGACGCGGCGTTCATGGAGGC 3484100 28 100.0 32 ............................ TCGATAAGCGCACGGCCAATGCCGGTGCTCTG 3484160 28 100.0 32 ............................ CAGCCCGCAACAGATCGAGGCCAACACGAAGG 3484220 28 100.0 32 ............................ TCGCTGCGCCATAGATTCCGGCCGTCCACGTC 3484280 28 100.0 32 ............................ TCCCATGCTAATCAGTCCCGTCTATTACCCAC 3484340 28 100.0 32 ............................ AAAGAGGATTACCGATGGCTCACGCACCGGGA 3484400 28 100.0 32 ............................ ATGCACCCTGCTTGTCATCAAGTCGCGGCAAG 3484460 28 100.0 32 ............................ GATGCGCCAGGCCATCGAGGAAGGCGGGTTAA 3484520 28 100.0 32 ............................ TTCTGCGCCGCAATCACAATAGTCTGCATGAT 3484580 28 100.0 32 ............................ ACAGCAGCAGTCGCGCAAAGCAAGCCGCAAGC 3484640 28 100.0 32 ............................ CATCGAAGCCGCACTTGCTCCTGATGCAGCGG 3484700 28 100.0 32 ............................ ATGTCCTGCGGCAGCAACGCGCCGATGGGGGC 3484760 28 100.0 32 ............................ CGGTGCTGCGCAAGTGATATCCCGGATCGTGA 3484820 28 100.0 32 ............................ TGGTGGCCGCATCCGCGCAGCACTTGCGCAGG 3484880 28 100.0 32 ............................ ATTAGAGCAATATATGTGCTTGCCATCTATGT 3484940 28 100.0 32 ............................ CGGCTGAGACAAGGCACAAGGAGCCGGTCATG 3485000 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.3 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCACCATCTGATGGCAACCACCTGGCTGCATGGTGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCTGAACGCCTGCGTCGGCGTGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGAACCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTCTTAAGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGACTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATTTGCTGCCGCCTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCTGCGCCTCCACTTGGTGTTCGGCGTGGATATCCTCCGGCACCTCGCTGACCTCATCGATCAACTTTGGGACTTCGTGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAGCGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAATAAAAAATCTTGTTGGCCAGGATCGGATAGCCAATGCCCTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3624764-3624616 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIA01000003.1 Xanthomonas albilineans strain GPE PC17 Xal-GPE_PC17-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3624763 28 96.4 32 A........................... AAAGGCTGACTGGATGACCTGCCAAATAAGGC 3624703 28 100.0 32 ............................ TGGTTAGGGTGGGGCAGGCGCACTTCGCGAGC 3624643 28 89.3 0 ........................AGT. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GAATTCCAGCGCCTGGAACGACAACAGCATCGCGCTCGGCGCGCGTGCGGATACCTCGACGTTCCGGGTCAACGGGACGGCGCTTGGTGCCGATAGTGGGGCGTATGGCATCGATGCCACTGCGATTGGTGACGGCGCGCGGGTCGGCACGTGGCTGGATGATGCGCGCAACCACGCGCCGAAAAGTGCGGTCGCGCTGGGGGCACATTCTTACGCCAGCCGCGACAATAGCGTGTCGATCGGTGATGTTGGTAACGGTCTCACCCGGCAGATCACCAGCGTGGCCGCCGGCACCGAGGCGACCGATGCGGTGAATGTGGATCAACTCGATGCGGTCCGGCAAGTCGCCGAGGGCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTGGACAGATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : ATGCTCGGGGCATCAACCGGCCCCGATCCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCTCGCGTGCAAAATGGAAAACTTTTTTTGGAAAAATCCGTGTCAGAGCTAAGCGCTGCAAGGGATTACAAGGCTGACTTGGCGCAGATCGGACAGATCGATGTGACGCCATGGACTGCGGCAGCGCACGCGGACATGACCCCAGCCGAACCCGTAGAACTGGAGCCCTATGCGCGGTCGTAAACCTCTGCCTGTGGCCATCAAGAAGATCAAAGGCACGCTACAAAAATGCCGAACCAACGCGCATGCGCCCCGCCCCGACGGGCAGTTGGGCCAGCCGCCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACCTATGCGGTAGAGAACGCACCGCTGGGTTTGTTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGTG # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //