Array 1 31452-32440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXXQ01000046.1 Vibrio fluvialis strain 3663 contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31452 28 100.0 32 ............................ ATTAACAGATTCGGTAAGCTCTCCTACCTTAT 31512 28 100.0 32 ............................ AAAAAGGTCCGTATCGGCGCGACCACTGAGGT 31572 28 100.0 32 ............................ GCTTTGAGTATGGGTTACATCAACGTATATAC 31632 28 100.0 32 ............................ CAAACACATCACCAGGTGAGAAATCTTATACA 31692 28 100.0 32 ............................ AAATAGAAGTCGCTGCCGCTGCTGGGGCTGAT 31752 28 100.0 32 ............................ TCAAAAAGAAAAGGCGCTGATTGCGCCCGTTA 31812 28 100.0 32 ............................ GTCAAGCGCGAGACTCAGCTCGGCCGTATTGT 31872 28 100.0 32 ............................ TTGATGTGCTCCACAACATGAGATTTAGTTAC 31932 28 100.0 32 ............................ TACGACTTTCATCAACCAGATTTGGCTTCTAA 31992 28 100.0 32 ............................ ATCACATGGTAGTAATCAGCATGCTTCAATTC 32052 28 100.0 32 ............................ TAGCGCATCCAGTACACACTTAGCGCGTGTGT 32112 28 100.0 32 ............................ TCTTGAACTGTTCCAAGTGAAATCGATACCTA 32172 28 100.0 33 ............................ TTGGTCATGTGCTCGGTGAGTGATGAGTTTTTT 32233 28 100.0 32 ............................ TACCGTGAGTAACCCGGCCAAGCAGGAAGCGA 32293 28 96.4 32 .............G.............. TTTGACGTAAATGCGCAGAAGATGACGATATT 32353 28 100.0 32 ............................ TCGACGAAGTACTTTACCCCAACTGCCCGCTA 32413 28 71.4 0 .C.......TAC.......AGG.....T | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAACGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGCAAACCGCTGGTGGAATGTCTAGCGGATTTGCAACAAAGCAAGCCGACAGCATTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAATAGCAAGTTTCCGCTGTTTATTCAGATGCAGCAGCAAAGTACATCACAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGCCAATCAGCATTGGCTACCGTACCGAACTTTTAAATTGAACGAAAAAGGGTATTTTTTACCCTTTATTTTTGCTATTTAAAAATATGCTTAAATACAAATGGTTGCAAATGGTGGTTTTTAACAGGGCAAAAATGCATTTTTCATCCTAACTACTTGTTGCAGCATTCTTTTATAGAATTATTTTATT # Right flank : TTAAAACGGGATTCATGGCAAACGGTCGTGGAAGTTGTATCTTACATAAAAACCTAACAACGTCGATATCAATAGGTTTTTTGTGTACTTATTGGTATGTGTAGTGTGTTATTCTGAATTGGTTGCAAGAGACCAACATTAAATTTTTCATAATTGTTTATTGATTTAGTTAAATCATACGTTATTTTCGATAACAACAATGACATTTTAGGTTCGAAAGTATCCAATGATGTTTGATTTCCAGCATTACTATTTCTTACATTGCCACAAAGCATCCTTGTTCATATTACCCAACTAGTGACAGTGTCTCCGTCATTACTTGATACCCAATCTTCTCGCTAGGCGGTGTAGGTTTCCACTATCCAGTTCCAATTGTCGAGCCGTCGCTGCCCAGTTGCCTTGGTTATGATTGAGCGTTTGAACAATGATTTTTTTTTGATACCTATCCGTTGCTTCTTTAAGCCCCATACCTGATTCACTAATCGGCGAAATGTTGGTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 47669-47462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXXQ01000015.1 Vibrio fluvialis strain 3663 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 47668 27 100.0 33 ........................... AGTGAAAGTCGGCAAGTTGGTAAAGCGCTGTAT 47608 27 100.0 33 ........................... ATTGCACGGGCGCAAGCCGTTCCGGACGTTCAA 47548 27 96.3 33 .......A................... AAGCATCGGAAATGGATTCGGAAGCTACAACAC 47488 27 96.3 0 .....................T..... | ========== ====== ====== ====== =========================== ================================= ================== 4 27 98.2 33 GTGTTCCGCCGAGTAGGCGGCCAAGAA # Left flank : AGAATGGTGAATGAAAATCTCTTTGAAATTTCGGATATTAAGGCTGTCCCTGATGACGCAGAGGAAGTTCGATTTGTATTCAATAAAACAATTCAAAAAATCTTCAATGGTTCGAAAAAACGAAGAATTAAACGAGCAATGAAACGTGCTGAAGAGTTTGGACATGCTTTCACACCTATCTCAGTTGAAGAACGGGAGTTTGAGTTGTTCCACGACATACCTATCAGCAGTAAATCATCAGGACATGACTTCGTTTTACATATACAACGGCAATATCCAGTGGTAGCAGAAATAGAGCAGCATTTTAATGGCTATGGATTTGCGTCAAATCAGCTATGGCAAGGAACAGTCCCACTTATCTCTTTTTGACCTTATTTTTTATGAAAGACAGTTAGTTTAATTAAATCAAGTGGTTATGTAATGGTCGTAGAAGAAAGGGTATTTTGTGTCAAAGTGATAGATAGTTATGTATTTCAGTAAACTATCGTCTACCATTGATA # Right flank : TAGATCAGGAAGCAAGCATCCTATATCCGCTGGGCTAGCGGTAAATAAGCCAACTAATTGTCCATACGTGAAAGCCTATGGTTTTAACACTTAAGAAAACATTTATCTGAATTGAGAGTGCCCTAAAGCTTCTTAGCTCTACCATCTTGACTCGTTACTATTGCCATTCGTTGGCCTACTTCAGGTAATGGTCAACATATCCCTAGATAAGTAGTGTCTACTCATGACCAATCGTCTTACTTATATTGTTGTAGCATAGTGAACATGCTCACTAGGTTAGAGTTATTTTCAATACGCCCTGTAATTCATTAAATACTAAATTAGATATATATGTAATTAAGAGATCTCCAAAAGTGACCTGCTCGATACGCGGCAGCTTGCGTGCCTCCGGGTTAACTTCACTTCTATTTACACATCTCATAGAATGCCCAACTTACCGCTCAACAAATCTGTAAACTTTCTGAAATCACAATTATATGATGTGCTAAGTTTGCTAATAT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCGCCGAGTAGGCGGCCAAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //