Array 1 163363-160832 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIY01000041.1 Salmonella enterica subsp. enterica strain GX20150603 ZB100001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163362 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163301 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163240 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163179 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163118 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163057 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162996 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162935 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162874 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162813 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162752 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162691 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162630 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162569 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162508 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162447 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162386 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162325 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162264 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162203 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162142 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162081 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162020 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161959 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161898 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161837 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161776 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161715 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161654 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161593 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161532 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161471 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161410 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161349 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161288 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161227 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161166 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161105 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161044 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160983 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160922 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160861 29 93.1 0 A...........T................ | A [160834] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181362-179870 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIY01000041.1 Salmonella enterica subsp. enterica strain GX20150603 ZB100001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181361 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181300 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181239 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181178 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181117 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181056 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180995 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180934 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180873 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180812 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180751 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180690 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180629 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180568 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180507 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180446 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180385 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180324 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180263 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180202 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180141 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180080 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180019 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179958 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179897 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //