Array 1 75012-73397 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRVX01000103.1 Escherichia coli strain A119 NODE_12_length_103059_cov_81.3192, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75011 29 100.0 32 ............................. AACTGCTGGAATTGTTTGATCAATTACCGGAC 74950 29 100.0 32 ............................. ATCATCACAGCCAGCCTCAAAGAGGTTGACGT 74889 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 74828 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 74767 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 74706 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 74645 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 74584 29 100.0 32 ............................. TCATACGCCTGGTATAGCGATCATCCCGATGA 74523 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 74462 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 74401 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 74340 29 100.0 32 ............................. CGCACTCAAAATAGTAAATTAATTTATGAATT 74279 29 100.0 32 ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 74218 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 74157 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 74096 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 74035 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 73974 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 73913 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 73852 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 73791 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 73730 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 73669 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 73608 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 73547 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 73486 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 73425 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 101443-100559 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRVX01000103.1 Escherichia coli strain A119 NODE_12_length_103059_cov_81.3192, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101442 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 101381 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 101320 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 101259 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 101198 29 100.0 32 ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 101137 29 100.0 33 ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 101075 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 101014 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 100953 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 100892 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 100831 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 100770 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 100709 29 96.6 32 ...C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 100648 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 100587 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //