Array 1 1-1554 **** Predicted by CRISPRDetect 2.4 *** >NZ_MANA01000020.1 Streptococcus agalactiae strain AB-11 NODE_28_length_1595_cov_74.1377_ID_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... GTTGATCTTATTCACGTTTCGTGAAGTTTA 67 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 133 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 199 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 265 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 331 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 397 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 463 36 100.0 30 .................................... CTTGCTTGCTGTTGTAAATTGCCCGACTGT 529 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 595 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 661 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 727 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 793 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 859 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 925 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 991 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 1057 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 1123 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 1189 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 1255 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 1321 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 1387 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 1453 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 1519 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGTGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 962-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_MANA01000024.1 Streptococcus agalactiae strain AB-11 NODE_31_length_1002_cov_73.0519_ID_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 961 36 100.0 30 .................................... ACGATGTTTGTGAAAGACAAAATCTTCGCT 895 36 100.0 30 .................................... GTTGATCTTATTCACGTTTCGTGAAGTTTA 829 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 763 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 697 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 631 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 565 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 499 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 433 36 100.0 30 .................................... CATGCTTGCTGTTGTAAATTGCCCGACTGT 367 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 301 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 235 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 169 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 103 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CTATCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : CT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-894 **** Predicted by CRISPRDetect 2.4 *** >NZ_MANA01000026.1 Streptococcus agalactiae strain AB-11 NODE_33_length_895_cov_74.2873_ID_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... GTTGATCTTATTCACGTTTCGTGAAGTTTA 67 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 133 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 199 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 265 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 331 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 397 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 463 36 100.0 30 .................................... CATGCTTGCTGTTGTAAATTGCCCGACTGT 529 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 595 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 661 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 727 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 793 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 859 36 91.7 0 .................................CTT | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : T # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 276972-277865 **** Predicted by CRISPRDetect 2.4 *** >NZ_MANA01000033.1 Streptococcus agalactiae strain AB-11 NODE_3_length_277866_cov_83.5402_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 276972 36 100.0 30 .................................... GATGTTCTTATTCACGTTTCGTGAAGTTTA 277038 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 277104 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 277170 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 277236 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 277302 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 277368 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 277434 36 100.0 30 .................................... CATGCTTGCTGTTGTAAATTGCCCGACTGT 277500 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 277566 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 277632 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 277698 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 277764 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 277830 36 86.1 0 ............................GGACT... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : C # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 210-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_MANA01000039.1 Streptococcus agalactiae strain AB-11 NODE_45_length_209_cov_52.8797_ID_89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 209 36 86.1 30 .......CC.C.GT...................... TTTTTACCAATGCTTCCATATCGCTTATAT 143 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 95.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCT # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-1092 **** Predicted by CRISPRDetect 2.4 *** >NZ_MANA01000009.1 Streptococcus agalactiae strain AB-11 NODE_18_length_44824_cov_80.0988_ID_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... GTTGATCTTATTCACGTTTCGTGAAGTTTA 67 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 133 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 199 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 265 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 331 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 397 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 463 36 100.0 30 .................................... CATGCTTGCTGTTGTAAATTGCCCGACTGT 529 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 595 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 661 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 727 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 793 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 859 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 925 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 991 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 1057 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //