Array 1 1192940-1181527 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031251.1 Neisseria subflava strain M18660 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1192939 33 97.0 32 T................................ TATTATCTGGGGCGACAATCTTGATGATGTCC 1192874 33 97.0 36 T................................ GCCAGCTTGATTTTGTTGTCACCGTCTCGGATGACG 1192805 33 97.0 36 A................................ CTTACCTTTACCGCCAAATCGGGAATCCCTACGAGT 1192736 33 100.0 35 ................................. CGCTCACGTTAGCTAGGATTATTGGGGATATGCCA 1192668 33 100.0 35 ................................. ATCCTGCTGACTAGTATCAAGGACATTAATGCATT 1192600 33 100.0 33 ................................. GTCAAATTTTCCAAAAACTACAAACTCTTTTTG 1192534 33 97.0 35 T................................ TTCAGTCAAATGCCTATCTTCCCTGCTTGCAAGCT 1192466 33 100.0 34 ................................. CGGCTGTTCCGGTTATTGTGCATTGCGCCGGTAA 1192399 33 97.0 33 A................................ CAGCCATACCGAGCTGCTCTGCCAGTTTTGTTG 1192333 33 97.0 34 C................................ CGCGAACGCGGTGAAACGATTAAGGATTGGTGCG 1192266 33 97.0 33 A................................ GTTGTGATTCGTTAATATGATGTTGTCTGATGG 1192200 33 97.0 35 T................................ TTATGGTATTTCAATGACAGCAGACATCATGATTG 1192132 33 100.0 35 ................................. AGCAGTATCATTATCAGGTGCTGGGATATCAGCAG 1192064 33 97.0 34 T................................ AACGCTATCCAAACTGTGATGCAATACGAGCGAA 1191997 33 97.0 34 C................................ ACAAACACGCTAACCGCCTCTTTCTCACTGCCGC 1191930 33 97.0 33 C................................ CATCATTTCGGCTGGAAAGAGTGGCAAGAGATT 1191864 33 100.0 33 ................................. ACGGCATGGACGACTGCGCTCTCCGGCGTGGTA 1191798 33 97.0 32 C................................ ACGCGCTAAGTGCAACCGCCTGACCGAGATTT 1191733 33 97.0 34 T................................ AGGCGTTTACCGGAAATCGTCGAATCCCCGGAAG 1191666 33 100.0 34 ................................. CGAGATGAGCAAGCGCAAGCGGGCGGTCATCGGG 1191599 33 97.0 32 C................................ GGGTTTGCTGGTACGCGGCGGGCTGATGCGCA 1191534 33 97.0 33 C................................ GCCCGCACTGGACGGCATGGCTCTGGCTGCATT 1191468 33 100.0 33 ................................. TTTCCGTGGGCGTTTGTTGGTTGCCATGTTTCA 1191402 33 97.0 34 T................................ AGTTTATTTGATTCGCTATGCTTTTGTTTTTCTT 1191335 33 100.0 34 ................................. CAAAAAAGATGCTGAGGAGGGTTTGAGCGAATGG 1191268 33 100.0 34 ................................. TGAAGGAGTTGCGGCTATTCGTTCGTTGCAAGCC 1191201 33 97.0 34 C................................ CGAAGATGGCGCAGTCGCGCAATTAGAAGAAATG 1191134 33 100.0 33 ................................. TTTAAATCGGCAGCAGATTGATGCTGCCAAGGC 1191068 33 100.0 35 ................................. AGCTCGTACTCTACCGTAGGGAGGTCAACGGTCAG 1191000 33 100.0 33 ................................. ATTGGAGCATTGGTAGCAGTAGGTTTGGCAGCT 1190934 33 97.0 34 A................................ CATATATTCTTTTCTGTCAGCAGTGGGATTCGGC 1190867 33 97.0 34 A................................ TAAAAGCCACGTTATAATTCGTTTTATCAGATAG 1190800 33 100.0 36 ................................. GCTTTAATACGTTGCTAGTAAAAATTTTAATTGACA 1190731 33 97.0 32 A................................ CTTCAAATCGCTACCTCATCTATTGATGCAAA 1190666 33 97.0 32 C................................ AATGAATTGATGTACATTCATTTCCAAAGCGC 1190601 33 97.0 33 T................................ TGCTTGCGTAAAAAGTGATAATGGCTGTAATTG 1190535 33 97.0 34 C................................ TTGCTTAGGCTTACCACCGCGCTTAATAAGCTGG 1190468 33 97.0 36 T................................ AGTAAGTGAACTTGATAGAAACCTAAGAGGAAACCA 1190399 33 97.0 34 A................................ AATCCTGAAGAAGCACTGGAAGCTTATGTTGGTA 1190332 33 97.0 32 C................................ CACACACACAATCGGCACCGGCGACGATTTCA 1190267 33 97.0 33 C................................ ATCGCCCTTTGCACCGTCTGCACCTCGCTCGCC 1190201 33 97.0 34 T................................ TTAGCATGTGCTAACGCGCTTTCTTTTGTGTATG 1190134 33 97.0 34 C................................ GTTTATTCCCCGTTGCGAGACGGCCTTGTATGAG 1190067 33 97.0 33 C................................ GCCAAACCATCGAGGCGGAGGCGGACGGCTTTG 1190001 33 97.0 33 A................................ GGCCATTCTTGACAGCCGTACCCGGCAGAGCCA 1189935 33 97.0 34 C................................ CTTGATGATAAAACTGCCCGCGCCCCTATCGCAA 1189868 33 97.0 34 T................................ CTGATGAAATTAAACCTGGGATGTCTGAAAAAGA 1189801 33 97.0 32 A................................ AGTAACTTCCTCATCATCCGACCGCCATTATA 1189736 33 97.0 36 C................................ TACAAGACAATGAGCAAGCTGCGGCGCACCTGCAAG 1189667 33 97.0 34 A................................ TTTGCTGACAGTGGCCTTGAAGACATTGCCGATA 1189600 33 97.0 34 A................................ TCCATTCTTACTAATCTGGTACAACATATCAATT 1189533 33 100.0 33 ................................. CGTTGAGCTTATCGACTGCGAAACAGGCGAAAC 1189467 33 97.0 33 C................................ AGCGCATATGACGAAGATGGTATTGACATGGGG 1189401 33 97.0 32 A................................ CATACCAAATCTTCGCACATCTCAAGGGCAAG 1189336 33 100.0 32 ................................. GCTGATTTTCAGACAGCCTCGACAGAAGCGGC 1189271 33 100.0 34 ................................. AAGTTTGGCGCAATAACGCAGGTCAATAATACAG 1189204 33 97.0 34 T................................ CGCAGCCGTCTTGCCGTTAAGCGCGGCAAGACGC 1189137 33 100.0 34 ................................. AGTTTTGCCAGCAATGCGGACGCATGGTGTAGCC 1189070 33 97.0 34 C................................ TGTCTTCAGGAACGGAATTAACCATCCGTCATGG 1189003 33 97.0 32 A................................ GTAAAATGGTTGAGCGCGGTGGGGCTGGCCTA 1188938 33 97.0 33 C................................ ACGCTGGCGATTTGGAAGAATTGGCGACTCGTG 1188872 33 97.0 34 T................................ AGCACCAGTCGCCAAAGCATCTTAGTAACCGCCG 1188805 33 100.0 34 ................................. AACTTTAAATGCTTCGATTACCTTTTGCACACGA 1188738 33 100.0 36 ................................. TAAAAGATGGTATATAATGCCATCAACGTGTTAGAA 1188669 33 97.0 32 A................................ AGCGCAAACACAAAGGCCGTCCAGAAGCTGGA 1188604 33 97.0 34 A................................ CCTTGAACGCCGAGATGCAATCTTGGCATTATCA 1188537 33 97.0 34 A................................ ATCTCTCGAGATGGTCAAAATGAATCACTAGACA 1188470 33 97.0 33 A................................ ATGATTGCTCTTTCATATATTTAACAAAGGCTG 1188404 33 97.0 32 T................................ CGTGTGACAAGCGTTGATGCAAACAGCTTCAA 1188339 33 100.0 35 ................................. TCTTTGGGTTGAGTGTTTGGCCGTCCGTTTTCGGA 1188271 33 97.0 34 C................................ TGTTTCGGTGTGGGATGTTGACAGGCTGGGCGCG 1188204 33 100.0 34 ................................. TTCGGCTGTCAGACAGTAAAAGTCTAAGTCGGAT 1188137 33 97.0 33 T................................ CAATAGGGGGGATATATAACCGCGTCTTTATCC 1188071 33 100.0 32 ................................. GTAACGCCAACGCCTGAAGTGATTACGACAAG 1188006 33 97.0 32 T................................ CACAGGTGGACAATCAGGTCGGGTTCTTCGGC 1187941 33 97.0 32 C................................ CGCGCCCACACCCAGCGCCGAAAAATAAAACG 1187876 33 100.0 32 ................................. CTGCCGATGGGTTACAAGATTGGTGGGGCGCA 1187811 33 97.0 34 T................................ TCTTAGTAATGAAAGGCAATATTATGTCTATTGA 1187744 33 97.0 34 A................................ CAATAGGGGGGATATATAACCGCGTCTTTATCCG 1187677 33 97.0 34 C................................ CACGCCCGCCCTGATATTGAGATGGACGAAATCC 1187610 33 97.0 33 C................................ TCAAGGGTGCGCAGTTCGCCCTCTGCATCGAGC 1187544 33 97.0 32 A................................ ACATTAGACAGTGAAACTGTTGAGAATGGTTT 1187479 33 100.0 34 ................................. ACATAGAAAGGATAATACACAGACGGCTTACGAA 1187412 33 100.0 34 ................................. GTCGTTATCGGCGTATTTATAGGCTTTCTCGATA 1187345 33 100.0 33 ................................. AAAATCCTGCTGCAAAGTCAGATAGTCGCCAGC 1187279 33 100.0 32 ................................. GCAAGGTGCGCGTGGTATTGACGTATACTACT 1187214 33 97.0 34 A................................ CGCAATCCGTCCATCGTGTTGCATGGCAAGTGGT 1187147 33 97.0 34 C................................ AAATACAGATTCAACGGCAAGGACTGGACGGCCT 1187080 33 97.0 34 C................................ CAATCGTCTACCCGAAATACTAAGTGGATTAACC 1187013 33 97.0 34 A................................ CAGCCATACCGAGCTGCTCTGCCAGTTTTGTTGC 1186946 33 100.0 33 ................................. TTGCGGCCATTTCCTGAATGGCTTTAGTCAAAA 1186880 33 97.0 38 C................................ GTGGCAAATGTGCGAATGCCATTATCTCTATGTTGCCC 1186809 33 97.0 33 T................................ GTGGTGTCGCTAAACTGAACAAATACGATAAAA 1186743 33 97.0 33 A................................ TCCCTATCTAGAATAGGGATTTCTACCATCATT 1186677 33 97.0 33 T................................ CACTTCTTACGTACACATGGTTTCTTTGGCTTA 1186611 33 97.0 34 A................................ AAGCAAACTCAACAGACTAATAAAAGGCCGTGTC 1186544 33 97.0 34 A................................ CTCAAACTACCGATGATAGGACATGGTCGTCAGA 1186477 33 97.0 33 C................................ AAGTTGTCACTTGGATCGCATTTGGGCAAATCG 1186411 33 100.0 32 ................................. GGCATCTACAAAGAATCCAAAGGTTCGGGCGG 1186346 33 97.0 34 T................................ AGACGTTTGAGGGTCGGCATGATGTCGTTGGTGC 1186279 33 100.0 34 ................................. ATATCTTCGCCAGGCATAAGCCAGACTTTACGAT 1186212 33 97.0 33 C................................ TTGGCATTCAGCCATTCCACAAACTCAGACATA 1186146 33 97.0 34 T................................ GGCCACAGCACGAAGCGCATCGCCCTGATTGCCA 1186079 33 97.0 34 T................................ CCTAATATCAGGGTGGTCATTAATGGATAGCATG 1186012 33 97.0 35 A................................ GTTGCACAGTCAAATAACTTTACATTTCTTGACGT 1185944 33 97.0 33 T................................ CTTGTCTAAATAGTAACAACTGCATTGAGATTG 1185878 33 97.0 34 A................................ GTACCTACCCCTACTGCGCCTACTGTGGACGTAC 1185811 33 97.0 33 A................................ TTGTCGGTCAGACCGAAGCCTGCGATGTACACG 1185745 33 97.0 32 C................................ GCTAAACCGACCAATGCCAACGTGGAAGCCGT 1185680 33 97.0 34 A................................ ACGATACACAATTACCGTAGAGAACCCAAGAAAG 1185613 33 97.0 33 A................................ CAATCAATGCGCCGCTGTCGGATTTTGGGAAAT 1185547 33 97.0 33 A................................ TTAATATCGGCCTGAAAACTAGTCCACACATGA 1185481 33 97.0 36 C................................ GGGTTTTTTCTGATACCTCATCAGCAACCCTAAACG 1185412 33 97.0 34 A................................ GGGGCTTTTTTTGAGTTGGACTGCCAAGAGGGCG 1185345 33 100.0 33 ................................. TCGGCTTTTGCCATCGCGCCTTCGCCAATGACG 1185279 33 97.0 34 A................................ ACAAAAATCCACCGCGCCAAATACCTGCGCGCCC 1185212 33 97.0 33 A................................ GTCATCACTAACTGTCTCTTGTTGTTCCCATAC 1185146 33 97.0 33 C................................ AGAATCAAACGGATTGAAGATTTTATCTTGTGG 1185080 33 97.0 34 C................................ GACAGCCTTTTCTTCAGTTTTACTAAGTTCTATG 1185013 33 97.0 35 C................................ CCAAACGCACCGCGTTGGACTGAAGAAGAAATCAA 1184945 33 97.0 35 T................................ TTCAATAGAAGAATATCCTTTAATAAAGCATTGGA 1184877 33 97.0 34 A................................ CACGTATCGGAAGCAACAAACCATATGCGGCAAT 1184810 33 97.0 33 C................................ CGGCTGCGGTCAAGCTGGATCAGTACGGTAACA 1184744 33 97.0 33 T................................ CGGCTGCGGTCAAGCTGGATCAGTACGGTAACA 1184678 33 97.0 34 T................................ CGATGATTTTTGTGTGTGATGTGAGTTTTATGGG 1184611 33 97.0 33 T................................ TGCCGCCTGTTCGTAGTAAATGCCTGTTGCTTC 1184545 33 97.0 35 C................................ TAAATTTACCCGTGTTTATGAGAAAGGAAAACAAT 1184477 33 97.0 33 T................................ GGAACAAGTGCGGTTACCCCATACACGATAGCC 1184411 33 100.0 34 ................................. AGAATCAAAAAACAACGCAGCCGAGACCATCGAG 1184344 33 100.0 33 ................................. TGCCGCCGCTCAGCGAGTCGAAATTATTACAAT 1184278 33 97.0 34 C................................ GGAAAATCCGCCCGATTGATGCGGCGCGAGTGCA 1184211 33 100.0 35 ................................. TCCGATATTTCTCATTTTCGTTCCTTACTGACAGT 1184143 33 100.0 34 ................................. GGTTGTATCATCAGTTAATGGTGCGACCGGTACA 1184076 33 100.0 33 ................................. AGAAACCAGGCGCGTACCTCTGACAAAGTAGTC 1184010 33 97.0 33 T................................ TCCTTTTATTGGATTGCACAATCCAAAATATAC 1183944 33 97.0 34 A................................ AACAGATATGAAATGCAACAATCTGCTGCTCGCC 1183877 33 100.0 34 ................................. ACTCATCTCAAGGTATTACCGTAGATAACGCCTA 1183810 33 97.0 33 T................................ TCTTTGATACGGTCGAGAATATATAGGAATGCT 1183744 33 97.0 33 C................................ CAAGATATGAAGGCACACGGCTATGCCATCACC 1183678 33 97.0 33 A................................ CCAGCGATGTCGTCAACGGCCTGCATGTAGTAG 1183612 33 100.0 34 ................................. TAACTTACGGCTACCGCCTTTTATCGTAGGGGAT 1183545 33 97.0 32 T................................ TGGACGACTGGCCAAACCGCCTTTTGCCTCCG 1183480 33 97.0 33 T................................ CGCGCAAACTCAAGAAATTACACAAAAAATACA 1183414 33 97.0 33 A................................ CGCGCAAACTCAAGAAATTACACAAAAAATACA 1183348 33 97.0 36 A................................ CGCTCGAAACGGTGGCAAAAGAATATTTAAACCTCA 1183279 33 100.0 32 ................................. TGCACATTCATTTGCCGCGCAATCTCAGGAGA 1183214 33 97.0 33 .................A............... CCACTTTTGAGCGGTTTTTAGCGTCGATTCCGT 1183148 33 97.0 34 A................................ CAACAATGTTTCAAGTTCAAATTTCATTTTCAGT 1183081 33 97.0 33 C................................ CATTGCAACCAATGCCATCAGTCAAATAGTCTC 1183015 33 97.0 33 T................................ ACCTACAAAAATTTCTGAAGAAGTTGGCAACGC 1182949 33 97.0 33 T................................ CATCAAGGAATTATGATTATGAAGGATTGTCTG 1182883 33 97.0 32 T................................ ATACTGACTTGGCAACTGCTTGATTTCGCCGC 1182818 33 97.0 33 T................................ AGTACGGCCAAAGCCGTATTTGTGGACGTTTTC 1182752 33 100.0 34 ................................. CCGACATCAATCATGACCGACTTCTTGCAGCCCT 1182685 33 100.0 32 ................................. TGCGCACAGGCAATAAAGTGGCGTTGAACCTT 1182620 33 100.0 33 ................................. CGCGGCAGATAAATCGAAAGGTTGCCCATCCAC 1182554 33 97.0 34 C................................ CAGCAGGCTGTCGAGCAAGGCTTCGTCAATCGGG 1182487 33 97.0 33 C................................ TGTGATTTGGGTATCGGCATTCCCAATTCGTTA 1182421 33 97.0 32 T................................ TTTGGCAATATCAATGGGCGAACTATTGCCGC 1182356 33 97.0 33 C................................ AATAATGGCCGCGCCGCTTGAAATCGCGTTGTC 1182290 33 97.0 34 A................................ ACGACAGCTATGTTTCGCGACCACGCGGCGAAAA 1182223 33 97.0 33 T................................ ACGCGTGAACGCAAAAACCAAGACGGCACATTT 1182157 33 97.0 35 A................................ TCGTAAGGCCGTTCTTAACGGAGCATTTGGCCTGG 1182089 33 97.0 33 T................................ CGCAAATACTTGCAACCACCGAAACGCCTCCCA 1182023 33 97.0 34 A................................ CCTTGCCAGCTTTTGAATATCCTCAACCGCCTGC 1181956 33 100.0 33 ................................. TGAAGAAGAACAGGCCATTATGCTGGCGTATGC 1181890 33 97.0 33 C................................ TTTGCTGAAAGTGGACTTGAGTCTATCAGCGCA 1181824 33 97.0 32 C................................ AAAACAACTTTTGATTTGTACTCAACATCAGC 1181759 33 97.0 33 A................................ GCCTTTTAATACTTGGTAGCCGGTGCCTTCTTC 1181693 33 97.0 33 T................................ AATATCTATATTTGGCACAATTTCACGTTAAAA 1181627 33 100.0 35 ................................. CGTGCCAAAGCATGGGCAAGTGCCGGGCTAACGAA 1181559 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ====================================== ================== 172 33 97.8 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTATGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATTTAGGCAGCAAATGGCGGCGGAAAGTGGAACACCACGGCGCAAAACCGGCAGTAGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGTGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGCTTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTTGCGCTTTTCTTGTGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGTAGCAAGGCTTTTAAGAGAGGC # Right flank : TCTGCCACCGTATCTCATGTCTGAGTAGGGACGAGGGGCTGTATGTTCAAATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTTCGAAGCTTTAGTGAAAGCTGTGGAGGATATTAGAAGCAAGTTATAAAGGGTAATTAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGAATCTATATCAATTTGAATTTTTTAGAATTTCAATATGACCCCCTCATTTACTACGCTCATTCCGCCCAAGATAAACTCGGCAATCCCTTGCCTTACAAACCATTGGCAAACCTTGCAAAGTCATTCGGTAAATGTGGGCGAAATGGCGGCTGAGTTTGCCCGGGTATTTGATGCGCAGGAAATTGCCTGCCAGACGGGACAGCTTCATGATTTAGGGAAATATTCAGTTGCCTTTAATCACCGATTGCATGGCGGCCCTTTAGTCGATCATG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1336280-1337231 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031251.1 Neisseria subflava strain M18660 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1336280 36 100.0 34 .................................... GTAGATGGTAACCAAGATTTCTTAACCATCATTT 1336350 36 100.0 35 .................................... TAGAATTAAATGCCATGATAGCCTCCATAGGTAAG 1336421 36 100.0 34 .................................... GCCGCAGACTCATTTACTGTCCAACCACACTTAA 1336491 36 100.0 35 .................................... TTCAATCGACTGCGTTTTACAATCGCGTTGCCAAT 1336562 36 100.0 33 .................................... CCATCTTCTTGGATGCCCTTGCGTACAGTCTTA 1336631 36 100.0 35 .................................... TTCAGGTTCACTTAACATCTTCGAAGCCTGGCTAA 1336702 36 100.0 34 .................................... TTAGAAGAAGATATTAAAAAACAAAAAGATTTTT 1336772 36 100.0 33 .................................... AACAAACTCTGGGTTTTCTTCGGTCAACTTCAG 1336841 36 100.0 34 .................................... TTAGCCGTACCACCTACCCAGCCGGTTCCGTCCT 1336911 36 100.0 32 .................................... CCCATGCAGCGTCACCGAAGTTACCTTGTGCT 1336979 36 100.0 34 .................................... TCCTTAATCAGCTTGAATACAAACAAACCTTTCT 1337049 36 100.0 34 .................................... CCAGTCAGTTCGAAGACAGAAGTCGTCTGAACAG 1337119 36 100.0 35 .................................... TTGTCAGCCGTTTTCTTAACCCACTTCTTCATCAA 1337190 36 88.9 0 .......................T...TT..C.... | T,TT,AT,C [1337208,1337213,1337218,1337222] ========== ====== ====== ====== ==================================== =================================== ================== 14 36 99.2 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : TGTTCCGTAAAAACCAACTGATTTTTTGCGAACTCAAATCCGATTTAAGCTCCGAAAGCAAACTGGCAGACCCGCTAAGGCAAGTGATCGACCAAAGCCTCAACATGGGCAAAGTGCGCCGCGTCCTGATTTTGTCGCCCATTATTCAAGCCAATGCCGGTTGGCAAAAATGGACGGCATTCGAACGCAACTGCGCCGCCAAAAACATCCAAATCATCATCGCCGGCAACAAAGAATCGCTGAAAATCCTGACAAACTGACCTCAAAATCCCCTTAACACTTTACCGTCGTCTGAAACAGTTAAAAAGCATTGTCGAATACAGAGTACAAAGCTATAATCAGCATCACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAATGTTTCGTTAATTAATGTCTTTGTTTGTTAAGAGAAAATGCTAACGTTTCTTAACTATACAAATATTTGAATATAATGGAATTTTTTAATTGAGTGCA # Right flank : CGGCCTTACTTTAAGGCCGTCTGAAAATATCCGCTGTCTTGCCCTTTTCATTGGGACAAAAATAAAACGGCCTTGGCGGTTTGCTCCGTCAAGGCCGTTTTATTGTATCCGGCGTATCTTTACAGTGTCTGAATAATGCGGTACTGCCCGTTGCCGAATACCGTTTCTTTTCCCAAATGCAACCATTGCCCGATATACAGCATTTGTGCGAAAGCGGGGGAAAGGTCGGTCAATTGCCATGTCCCGATGATGCCGCTCAACGGCGTAGTTTGCTTTTGGCGGTTGGAAAAGCGGCGGTGTTCGTGCCATAAAAGCTGCGGGGACTGTCCTTGTCCTGCGGCTTGTGCGGACAACTCGGCCGTGTCGGCGTTGTTTTGCCAATAAAGCCGGGCAAGCGTCAGATAGCGGCGCATCAGTTGGCGCAGAAAAATTGCCTGAGTAAGTTCGTTCTCGCGCAAAATCCTGCCTTTTTGCTGGATACGCAAGGGGGTGAGCAGCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 3 1343402-1342185 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031251.1 Neisseria subflava strain M18660 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1343401 36 100.0 35 .................................... TTGTATAGGCGGCTAGCCCATGATACTGTACTGAT 1343330 36 100.0 34 .................................... ATAATTACCAGAGCGTAAAATATCTTTTAGTTTA 1343260 36 100.0 32 .................................... TGGTTCGTTCTTTGAACTTAGCAGATGCTTTT 1343192 36 100.0 33 .................................... GGCTACTGACTCGGCTACGGAAGAAACGGATTT 1343123 36 100.0 34 .................................... GTCGCTTACTTTAGTAGCAACAGAGTACAGTTGA 1343053 36 100.0 34 .................................... GTCGCTTACTTTAGTAGCAACAGAGTACAGTTGA 1342983 36 100.0 35 .................................... CTGGCAAGACATCTACATAAAGGTACCATTTTCCT 1342912 36 100.0 33 .................................... TACGTTGTTAACGTAATACAACGAATCATTAAC 1342843 36 100.0 33 .................................... TTACCAGCCTTTACAGACTCCACACGTTGTACC 1342774 36 97.2 33 .............T...................... CTGAAGGAAGTTTTGGGCGCGTTGAGCTGCTGC 1342705 36 100.0 34 .................................... GACGTACACAGTCGAAGCAATACGCGTCGATTTG 1342635 36 100.0 32 .................................... TTTCTTGTTGTCGTATTCCAACAAGTTGATAT 1342567 36 100.0 34 .................................... CATTGAATGAAGCCGAGTGAGATTGTTTCCAAGC 1342497 36 100.0 34 .................................... TTGGCCTCTGGGAATTCCCCATTGTACATAAAGC 1342427 36 100.0 32 .................................... ATAGCAGTTTCAGGAGCGGTGTTGTCGGTGAT 1342359 36 100.0 34 .................................... GACAAAGCCTTGTGCCGCGCCTTGCAGTCGTTGT 1342289 36 100.0 33 .................................... ACGATAGGGAACTGGTTAAATTCAATTCGACCA 1342220 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 18 36 99.8 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : TGGCAAGAAAGAATGGAGGAGCAACCAAACAAGATCATAGGCAACCAAGCACACGACAAACTCTATCAAGAATGGAAGGCAGCCCTACAAACTGCCGCAGAAAGCCCCGATTTGAGCGCAGAGCAGAAAGCCGAAATCGCCGTTGCGTTTGCCGTCAAAAAGATGATGACAAAATACGCGAAATGGCTGACCGACAAGCGCGGAAAAGATCTGAAACCCATCTTAGCGAAGCTGCGCGGCGAATAGATTTTCGTCTTTGTCTGAGCCCGAACATTTCAGACGGCCTAAAGCCGTAAAACAGTTAAAAAGCGTTGTCGAATACGGAGTACACGGCTATAATTCGCAATACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTTAGTTAATATTTCGTTAATTAATGTCTTTGTTTATTAAGAAAAATGCTAACATTTCTTAACTATGCAGAGCTTTGAAAATAATGAAATTTTTTAATTGAGTGCA # Right flank : TCTTTGAGGATAGCACGCTTGGCTACATATACACGGTCGGAAGACTTGCCCTGCTAACGTTGGCGACGAGTGTTTTGCAGACGGCCTAAAAGCAAGGCCGTCTGAAACGGCTGGATGGTTTATCCTGTCCCTCTTGCAGCAAACAGCAAAATAGCCTTGATATTGCATCAAGGCTATTTTTGTTTTTTGATCGGTTTTTAGTTTTTGGTACAAAGCAGGCTGGTAATGCCGGATGGGGCCGTCTGAAAATCAGGCTCTGCTGTCGGGTTGAGGCTTAAAAATATCGGGTTGTCCATCCTTTATTTGTATTTTGTTTTTCATCAGCCGGCAGGCGGTATATAAGCGGGTTGGTGTTTACAGTGTGCCGAAGTTGCCCAATATGATGCCTTCGGGCAGGGCGGTTTGCCCCAAAGTATGGATGCTGCTGCTGTTGGCCAGTGGGTAGAAGCGCAAGTCATCCTGTTTGGGATGGAGCATTTGGCACAGTTCTTCAAAGCATT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 4 2105085-2103651 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031251.1 Neisseria subflava strain M18660 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2105084 36 100.0 35 .................................... CAGTCATCTCACCAGTTATATCAGGATAATTAGAG 2105013 36 100.0 36 .................................... CCATCCATCAAGTTGGATGTCGACCCGCAACCATTT 2104941 36 100.0 33 .................................... TGATAAAGTGATGTTAAATAAATCTTACGATGA 2104872 36 100.0 34 .................................... TGTTTAATTTCACCACTATCTAGGAATTTAATCA 2104802 36 100.0 36 .................................... ATTGGTCGTGGTCTAGAAACACAAGAAGGTGGTGTA 2104730 36 100.0 35 .................................... GGTGATTCAGGTGTCAAATTCAAACTGCGTACAAT 2104659 36 100.0 33 .................................... CGGATGCCCCGTTGAGTGGCAACGTATTCTGGG 2104590 36 100.0 35 .................................... CTTCCTGAGTTGGGGTTTTACCCGCCTTAACTGTC 2104519 36 100.0 33 .................................... TTGGAACTTGATCATTTGATAGATTGACATTAA 2104450 36 100.0 35 .................................... CTATTTTCAATAGACAAGATGCATGAAGCGTCATA 2104379 36 100.0 32 .................................... TTTTAATGTACTCGTGTGCTACTGTTTTGTAC 2104311 36 100.0 33 .................................... GAAAAAAATTGCCATTTGCCTGACTGCACTGCA 2104242 36 100.0 34 .................................... TGAACAGTACAACCAAGGGTTGTTTCTGCTTTTG 2104172 36 100.0 32 .................................... ATGGTATTCAATTGTCTCACTGGTGAATTCGT 2104104 36 100.0 34 .................................... TGCTGAAGCACCTGCTGCTTCCGCTGCTTCTGAA 2104034 36 100.0 36 .................................... AGCTGGTCTTTGCGCGGGTTGTCCACGATTTGACGG 2103962 36 100.0 35 .................................... CTTCGGCTTTTGTTCTTTCTTTCAGATTTGTTTCC 2103891 36 100.0 32 .................................... ATAGCGTTGCACCAACTCACATTCGTGGTACA 2103823 36 100.0 34 .................................... GCATAATCACCGTCAATAGCCATAAAGCCAACTT 2103753 36 100.0 32 .................................... AAGGATTTCAGGATATTCATGGGATACCTCCA 2103685 35 83.3 0 .................G....TC......-..TT. | ========== ====== ====== ====== ==================================== ==================================== ================== 21 36 99.2 34 CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Left flank : ACAGGGAGAAAAAAATATAACGTCGGCGACAACGAAGGCAGCCAATACTTTAAAGAATTGGAAACCGATTTGAAGCAGGCCGCAACGGACGGACGCTTGAGCAGCCAAGACAGACAGCAAATTACCGAGCAACCGGCTCTAAAACCCGTTTTACAGAAACACCAGCCCAACTGGTTAACAAGTAAACGCGAGAAAAGCATCAAAGAACTACTGAAAGCTTTACAAAACAACTAAAGCAGATAGCAAAGGCCGTCTGAAATTTTCAGGCGGCCTTTTACTAAAATATGCTTCTCAAGCAATAGCTTGGGTGCTAAAATGACAGCATTGTTCCCAATAGGGAACAATAGGTTTTTCAGGGTAAGTCAGACTTGGATTGCCCTTATTTTTCAGGCGGAAGCCTTGTTTTTTATGTTAATCCCCGTTTATCTTTGTGAATATTTGTAATCTAGATATTGACCATTTTAAGCATTTGAATTTAATAAAGAAAACATCCCTCCGCT # Right flank : AACGGTAAACAAATGCCGTCTGAAACCTATATTTAAGGTTTCAGACGGCATTTTTTATAAGAAGCGGCCATCTATAAGACGGTCTTTGGTCTATCAGCCAGAAATGACCGGAATATGGCCGCACAGTACGATACCCTCTGCCAAGAGGCTGCCTTTGAGTTCGTAGATGGGGCTGTGCGGGCTGAGCGGATAGATACGCAAATCGTCTGTCTTATCCAACATTCCGGTCAGTTTTTGAAACAAATGTTGCGCTTCTTCTTGTGTGCCTTTAAAAATGAAGACGCTGTTTTGCAAATGTAGCGCTTGTCCGCTTAAAAAACGGTAAGCCCTGCCCAATCGTTTACGGTCGGTAATATCGTAGGCTATCAGCCAGTTTTGTTTCATGATGCCTCGCTTTCTTCATCGGTTTCGTTTTCTATCACCATCCAGCCGCCGTCAAGGGCGATATCGGGCTGACGACTGACTGCCGCCAGATACTTGAGCAGGCGGATGCAGCTTTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 2108321-2106939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031251.1 Neisseria subflava strain M18660 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2108320 36 100.0 34 .................................... CAAAGAATTCAAACGACTACGTTTAGTGATTGCG 2108250 36 100.0 36 .................................... CTTGATACCGCGTTGTTCTGCAATAATTTCTGGTTT 2108178 36 100.0 35 .................................... TCGTACATTACTGGTTTATTCATTTCGATATATCC 2108107 36 100.0 37 .................................... TCAATGGTTTTACTGGCACTGTCTTTGTGCTCAGCAA 2108034 36 100.0 35 .................................... TTCTTTGTGAGAAGCTACAACGCTTGCTACACGCA 2107963 36 100.0 37 .................................... TTTTACAGGTGTTTCTGGTGTCAAATTCAGTGAACGC 2107890 36 97.2 34 ...................................T CCAGTCAGTCCAAACGTATCAATGATACGTTTTG 2107820 36 100.0 33 .................................... TTGTTTAAAACGACGATATTCACCAGATTTTTT 2107751 36 100.0 34 .................................... ACTGAAGTAGGCAATGAATTCACCATCTACTTTT 2107681 36 100.0 35 .................................... ATGGCCATTTTTACGGCTCACACACACTTTGTAAT 2107610 36 100.0 36 .................................... TGGTTGTTCTTCAGTCAATTTCAATGAGTTAACCAA 2107538 36 100.0 35 .................................... TCTCAGCGGTATTGGAAATAGCTACTGCACCTGAC 2107467 36 100.0 35 .................................... GCCGAAACACGCATCTTTACCTTGGCTAAATTCAC 2107396 36 100.0 35 .................................... GCCTTTACTCCAGATAGCTTGAAACTCTTGAATAG 2107325 36 100.0 34 .................................... GCAGCAGCTGCTGCTATCGACATCATGGTCTTAC 2107255 36 100.0 35 .................................... ACAGTCTGTTCAACAGTGTTACATCACCGTGTGCC 2107184 36 100.0 35 .................................... ACTGTCTTTAGCCAACAGTACACGGTCTGAATGAG 2107113 36 97.2 34 ...........T........................ GTTGAGTCTAGGACGATAGAGCCAGCGTTAGAAA 2107043 36 97.2 34 ...........T........................ GCATTTTTGTCGGCATAGTCGCCGTCCAATGCCA 2106973 35 86.1 0 ......................TC......-..TT. | ========== ====== ====== ====== ==================================== ===================================== ================== 20 36 98.9 35 CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Left flank : GTTTTGAAAAACGCATCATCTTCTCCGGCATCGCCGCGTCTTACCCGAATCCTGCCGAATTGAACGGCCGCATGGTCATCGCCGTCGCCAACTTCGCCCCGCGCAAAATGGCAAAATTCGGCGTATCCGAAGGTATGATCCTCTCCGCCGCCACAGCAGAGGGCAAACTGAAGCTCCTCGACGTTGACGCAGGCGCACAGCCCGGGGATAAAGTGGGCTGATACCTTTTACCACAGCACAAAGCAAAGGCCGTCTGAAACTTTCAGACGGCCTTTTACTAAAATATGCTTCTCAAGCAATAGCTTGAATGTTAAAATGACAATATTGTTCCCAATAGGGAACAATAGGTTTTTCAGGGTAAGTCAGACTTGGATTGCCCTTATTTTTCAGGCGGAAGCCTTATTTTCTATGTTAATCCCCGTTTATCTTTGTGAATATTTGTAATTTAGATATTGGCCATTTTAACCTGCTGAATTTAATAAAGAAAACACCCCTCCGCT # Right flank : AACGGTAAACAAATGCCGTCTGAAACCTATATTTAAGGTTTCAGACGGCATTTTTTATAAGAAACGGCCACCTATAAGACAGTCTTTGGTTTATCAGGCCGAAAGGCCGGTGATTTTACAGCCCGGCCGTGATCCGATAGCCTCCATGCCCGAATGTGGTTTCTTTTCCGATATGCAGCCATTGTCCAATATAAAGTAAAGCCGACAATTCCTTAGGAAGATCATAGAAAGTCCACTCTCCCATTACTCCTTGATAAGTCATATCGCGCTGTTGTCTGTTGGAATGACGTTTCCATTTTGTATCAGATAAAGATTTTCTCCCCCTGACAAGCTCTGTCGCCCTGATTAATTCTTGAAACCTGCCCTCCAACGGATGTTCCCAATGCGTCGTTGCAATCGCAGAAATATCGCGTATTGCCTGACGCAAAAACATGGATTCGGTCAGCTGTCCGGCTTTCATCACCTTTTTGTCGTGCCGTATCGTCAACGGGGTCAACAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //