Array 1 2937319-2943861 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR884459.1 Psychrobacter arenosus isolate Psychrobacter arenosus R7 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2937319 32 100.0 34 ................................ TTAGCGTCCATCTCGTCAATAACGGCTTGTGGGT 2937385 32 100.0 34 ................................ TTTTGATGATGATGGTGAAGCTGATGACAGCGAC 2937451 32 100.0 34 ................................ CGCGTTGTAAACATCAGCACCTAAAAAGGTAACG 2937517 32 100.0 33 ................................ CTGCTCTTTTTTTTCTCTCTTAGGCTTTGGGCT 2937582 32 100.0 32 ................................ AACGGGTGCTGATGATATGACGGGAACGGAAA 2937646 32 100.0 33 ................................ ACACTGATAACACGGAAGGTTTTTAGCTCTTGC 2937711 32 100.0 33 ................................ AATAGTTGGAGACATAGAATCACCTTGAGCATA 2937776 32 100.0 33 ................................ ATTCAGCGCCTCAACTAATAGATCAACCGACTC 2937841 32 100.0 33 ................................ ATACATTATTGTTAGTACTGCTATCTTATTCAT 2937906 32 100.0 34 ................................ AGGTATAACAACGCTTTCGTCAATATCAGTTTCA 2937972 32 100.0 33 ................................ AGGCTTTAATGGGTCATCAAGTACAATCAAGCC 2938037 32 100.0 33 ................................ TACGGCAGGGGCGATGATGACGGAGATAGCGAC 2938102 32 100.0 32 ................................ TCAGTCTTGCCGTTCACGTTGACTTTAGATAA 2938166 32 100.0 33 ................................ TTTATGGGTTAATTCATCAACATAGTGTATTAT 2938231 32 100.0 33 ................................ CCACTTGTAGCGACTGAGGGCTTTTTTTTAGCC 2938296 32 100.0 34 ................................ AGGACGGGCGTTATCTGCTATCACATCGTAACGC 2938362 32 100.0 33 ................................ ACGTACTGTGGGCAATAGCTTTTGCCATGCCAT 2938427 32 100.0 33 ................................ AGATAGTGCAAGCTGATAGTGATAGCGATGCTA 2938492 32 100.0 32 ................................ ATAGAAGACGCTATGGAGTTATACCAAGAGGC 2938556 32 100.0 32 ................................ GCTGTCTTTTGATTTAGTCATAATCTTTGCTC 2938620 32 100.0 33 ................................ CTAAATCTAAAAGGTAATTATCAATATTTAAAT 2938685 32 100.0 33 ................................ GCCATGATTTAACTAATGACTTTGTGACTTCGC 2938750 32 96.9 34 ....T........................... TTGCTTTAAGTAGAGCTCGTCGTCTAAATACTTT 2938816 32 100.0 34 ................................ ATTGCCAAACGCAATTGTTACAACTGGCTCGCTT 2938882 32 100.0 33 ................................ ACGGCGAAGACGTTATGTACGCGTCCGACACAG 2938947 32 100.0 33 ................................ TGCTTCATTGCGCCGGTCGGCGGTTCGTCGGGC 2939012 32 100.0 34 ................................ AATTATGAATAGTATTGCAGGAAAAGTCAGTACC 2939078 32 100.0 32 ................................ TATCGCTAGCCCTCAGATATGAGGAGTGATGT 2939142 32 100.0 33 ................................ AATCCCCTATAACTGTTAAAATAATTGTACTTT 2939207 32 100.0 34 ................................ ACACCTAAAGATATGTTACATACGATTTTACTAG 2939273 32 100.0 33 ................................ TATATCAATATTAATGGGGTTCGCATAAGGTAA 2939338 32 100.0 34 ................................ CTCATCTTTGATAGACATATTAAGCAGCCCAACA 2939404 32 100.0 32 ................................ TGTTAAGCAAGCTCAGACAGCAGAGGCTAAAG 2939468 32 100.0 34 ................................ AAGTTCTCATAAAGACCTGCAATAATTCCGCCTA 2939534 32 100.0 33 ................................ TAATTTTATTTGCTAGTTTATTTAACGCGTCAA 2939599 32 100.0 33 ................................ TCTAAGAAGATGCGGCTAAATGCAAATGCTTTT 2939664 32 100.0 34 ................................ AAAATTAGACGTTAAAACCGCAAGCGGACAAGAA 2939730 32 100.0 34 ................................ AAGTTGTATGAATACGAAAACAAATATGGTAAGC 2939796 32 100.0 34 ................................ GTAAGATTGTCGAGCGCAATACCGCGCTGATTAC 2939862 32 100.0 32 ................................ TATCGCTAGCCCTCAGATATGAGGAGTGATGT 2939926 32 100.0 33 ................................ AATCCCCTATAACTGTTAAAATAATTGTACTTT 2939991 32 100.0 33 ................................ ACACTAGCAATACCATTGTAAAAATTAACGTTG 2940056 32 100.0 33 ................................ GTGCTGTTAAGACTGGTGATACTGCATTTGTTG 2940121 32 100.0 34 ................................ AGCAGTATAGCCTAACTATCATCATTGGTGGAAG 2940187 32 100.0 32 ................................ CGATAAGTGTTGGTGGGTTTATTTAGGCAAAG 2940251 32 100.0 35 ................................ GCTGTTAGCGATATTATCGATAGCGCTATTTTGCC 2940318 32 100.0 33 ................................ AAGCCGTGGCTGGGGCGATAGTATTATCCAAGC 2940383 32 100.0 34 ................................ GTTGTCGTTGTCGGGCTAAGTGGATTATAGGTGG 2940449 32 100.0 33 ................................ AGTAATAGCAGAAACTGCCCTTTTTGATGGTGT 2940514 32 100.0 34 ................................ TTGGCTCGCCGCCATTGATTGAAACAAACTCGAC 2940580 32 100.0 33 ................................ ACAGCCAAGCCATCAAGACGGGCAATAATTAAA 2940645 32 100.0 34 ................................ TTTACCACGGCTGCCGACCTTGTGGCGTCACTCA 2940711 32 100.0 33 ................................ TAACGGGTCTCCATGGTTGCCTACTGTATAAGC 2940776 32 100.0 32 ................................ TTATGAGCATCAATCGCCGACTGAACCCAAGC 2940840 32 100.0 33 ................................ CTGCTCGTTGGCTGGCTCGAAGATTGCCTCCTC 2940905 32 100.0 33 ................................ GATTTTTGGCGAGGATTTGCACAACCTTGACGA 2940970 32 100.0 33 ................................ GATATAACTCACGTACTAGAGCTATGGTCTTTG 2941035 32 100.0 32 ................................ CTGAACCGCCTGCATGTTGTAGAAATCTCAGA 2941099 32 100.0 33 ................................ TTATGGCGACTGGATTACAGAGGTCTGCATACG 2941164 32 100.0 32 ................................ ATCCACAATACCTTCTCTTTCAGCCTTTGCTA 2941228 32 100.0 32 ................................ TTGCTCGTTTGCACAGGTGATAAACATCGATA 2941292 32 100.0 32 ................................ ATCCACAATACCTTCTCTTTCAGCCTTTGCTA 2941356 32 100.0 32 ................................ TTGCTCGTTTGCACAGGTGATAAACATCGATA 2941420 32 100.0 33 ................................ AACCAATGTAGAAAATTTTATCGCTGAAGTAAA 2941485 32 100.0 33 ................................ CGAGACATTTCTATTTCGCGTATTAGACCTCTC 2941550 32 100.0 33 ................................ CACAAAAGATAGATGACAGCGATAATCGCACCG 2941615 32 100.0 32 ................................ AGGTGAGTGATTTGCAGCGTCATGATGTCATC 2941679 32 100.0 34 ................................ TGATGCAGCTCTGCTTATTCCAATGTTAAAAGAT 2941745 32 100.0 33 ................................ TAACTTACTGCTAAATCCCTAGCAGTTGGGCGG 2941810 32 100.0 33 ................................ GTGGTCAGGATTAAACCAAGCGTGGCCTCTATT 2941875 32 100.0 35 ................................ GTATATCTCTGGAGCCGCTACAAACATCGGCATAT 2941942 32 100.0 34 ................................ AGCACTCAACGCGACAAGACAGTTAAGCGTCTGA 2942008 32 100.0 33 ................................ TGTGGTAACGCTTTTGCGCCTCGACAATGTAGT 2942073 32 100.0 32 ................................ TCTAAAGTAGAAGGTTTTATAGATTTTTTAAT 2942137 32 100.0 34 ................................ TAGATGTAAGAGACCGTTTTAGCGTTTGGATTGA 2942203 32 100.0 33 ................................ CCGATCGGTATGCCTGTCGGCTCTGGATAGTCT 2942268 32 100.0 34 ................................ GAGTAGGCAACTTTAGCAACGGTGTGGCGGTCAG 2942334 32 100.0 35 ................................ CCTTGGGGTTCGTACGTCAAGATCAAACGACTTAC 2942401 32 100.0 33 ................................ ACTAGCTTATCGGTTGAAATAGCCATATTCGTC 2942466 32 100.0 33 ................................ ATAGTAGACATATTATTATTAATTACTGATAAG 2942531 32 100.0 34 ................................ AGCACATAAGTATCAGTAGTGCCAGGGAACGTTA 2942597 32 100.0 32 ................................ ATAATGGCTAAACTTACCACTGCCTTGTAGGT 2942661 32 96.9 32 ...............C................ ACGTTCACGTGCAGCCTCTTTGGCAGCCCTAG 2942725 32 100.0 32 ................................ ATCGCTGAAACGTGTTGCAAGGTCGCTACGGC 2942789 32 100.0 32 ................................ TCGTAGGGCTTGCTGGCTTTGCATGGTATTAA 2942853 32 100.0 33 ................................ GCCCTTATCATTTTTTGACTGCCCAACATCGTT 2942918 32 100.0 32 ................................ TCCACGCAGGTAAATAAACAACTTATCAAAAA 2942982 32 100.0 33 ................................ GTTTAGAACCTCGCCGTCATCCATGCTCATGTA 2943047 32 100.0 35 ................................ ACCTATAATTTGTCGTTGTTCATCAATGTTTAAAA 2943114 32 100.0 34 ................................ ATCTATCAGCTCGCTGTCTGACATATTTTCAGGG 2943180 32 100.0 34 ................................ CCACACTGACTTAAAACCGGTGCCGCTACTCGTC 2943246 32 100.0 32 ................................ ATTACCCCACTTAATAAGAGTTCGCGCCGTGA 2943310 32 100.0 33 ................................ ACTGATTACTCAACGTATGAGCTAAACAGCGAC 2943375 32 100.0 34 ................................ GGTAAAGCCGTCGACTCTCTGCTTAGTGCGGGAG 2943441 32 100.0 32 ................................ TCAATCTGTCGATAACGTCATCAGCAACCATT 2943505 32 100.0 33 ................................ GTTTGACTGTTTTGTCCAGTCGATTAACGCTTG 2943570 32 84.4 33 ..............T..C........T...GA AATATATAGATGCACACAGGCAGCTATACCGCA 2943635 32 81.2 33 A..A..........T....T......TA.... AATATATAGATGCACACAGTCAGCTATACCGCA 2943700 32 87.5 33 A..A..........T............A.... AATATATAAATGCACACAGGCAGCTATACCGCA 2943765 32 78.1 33 A..A..T..G...TT............A.... AATATATAAATGCACATAGGCAGCTATACCGCA 2943830 32 84.4 0 A..A..........T....T......T..... | ========== ====== ====== ====== ================================ =================================== ================== 101 32 99.1 33 GTCGCACCCATCACGGGTGCGTGGATCGAAAC # Left flank : CTCAAAAGGGGCCAAACGGCTACGTCATGTGTCTAAGCATTGCTTAAATTTTGGACAGCGAGTGCAATATTCTGTGTTTGAAATTGAAGTGGATCCAGCGCAATGGACCACACTTAAAGCGACTTTAGAGGATATTATTAACCACGATACCGATAGTCTGCGCTATTATTATCTGGGTAAAAACTGGCAGCACAAAGTCGAGCATGTTGGCGCAAAACCTGTGTTAGACTTAAACGATGTCTTACTGTTTTAGCTAAAATAACAAGCAGTTGGATGAATAATCTGACGGTTAACGGCTGCTGCGAACCCATAGCGTACATAAAATCTCTAGGAGACTCGCAAAGGTTGCACAATACTATTTAACAATTTGATTTTAATAGCTTTATTTTATTAATGTAAAACTCTGGTGAGCTTTAAGCTGGCCAGATTCGCTTATGGTTTAGACGTTCGCAAACTCTAAGGTTTTTTCTTAACCTTATTAGTGACTTAAGCTATAGGCT # Right flank : CATGACGTATCCACCTGGTAACTTACTGCAGCAAAGCCTTTATAAAAGTAATACTGTATTTTTAAAACAAATGAAAAGTAAAAGACTATGAATTTATTCAGCAGACTTTCTTGTTCAAGTGATTAAAAGTGTCAAGCAGCGAGGCATGAGTATCAGATAAGCCTTTGTGTTTTATGATATTAGTAAAAACTAACTACAAATAGTTGGTCTTTTTTTTGTCTTTTCTTTAATTTTTTAAGAATGAGTCTTCATTTTTCAAGCATATAGTAGAGCTTTTATAAAAATGGTACAGTGTTTTTAAAATAAGCGAAAAGTAAAAAGATTATGACTTATTCAGCAGACTTCCGTGCTCAAGTGATTAAAAGTGTTAAACAACAAGGTATGAGTATCAGACAAGCTTGTGCATTTTATGAGATTAGTAAGGCCACGCTACAGAGTTAACTTAAAGATCCTAATATCAAACTTACTCGCAATAAACCACCCAGTAAAATACCTAATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCATCACGGGTGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3566936-3560601 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR884459.1 Psychrobacter arenosus isolate Psychrobacter arenosus R7 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================================= ================== 3566935 28 100.0 33 ............................ TCCTTAGTACGTTGTAAGTTAAGCCCTGTCGCC 3566874 28 100.0 32 ............................ ACTAATTCGCCAAGCTCAGCGCCTTTAGTTTT 3566814 28 100.0 32 ............................ TTAGTTTGTTGTGTTAAAGCCCCTTTGATTTC 3566754 28 100.0 32 ............................ TTCACGTTGCACGCGCTCGCCAAGCTCCATTA 3566694 28 100.0 32 ............................ AAGACCCCGACCACGAATTGACCGAAGATGAA 3566634 28 100.0 32 ............................ TCGCTTAAATCACACGCAGTAAAGGATAAATC 3566574 28 100.0 32 ............................ AAGAGTACAACGATTATCGTGGCTGGACGTTA 3566514 28 100.0 32 ............................ AGCCAACTCATCCATTAAAGAGGAGAATAAAA 3566454 28 100.0 32 ............................ ATGTTGTTCTCCTTATGCGTGTGCATCGTGAT 3566394 28 100.0 32 ............................ TCCAGTGGTCAACTGACGAGACAGCATCGGGT 3566334 28 100.0 32 ............................ AATTTCTTATAAATGTCATAATTGCTAGCTAC 3566274 28 100.0 32 ............................ AGTAGCTCTTTTGTCTCAAAATAAAAGTAACC 3566214 28 100.0 32 ............................ AGAAGAAAGTTTATATGACTGTTTACGTCAAC 3566154 28 100.0 32 ............................ GCGATGTGGATGGTCAGACATCGTTTGAATAT 3566094 28 100.0 32 ............................ AGAAGAAAGTTTATATGACTGTTTACGTCAAC 3566034 28 100.0 32 ............................ AGTCGAGCAGCAAGCCATCATTCAAATCCGTA 3565974 28 100.0 32 ............................ TGCGCTCGGTACATTGTGCAAAAAGATAGTGA 3565914 28 100.0 32 ............................ ATCTCCATTCAATTTAAATTCTTATTTAGCAA 3565854 28 100.0 32 ............................ TTATTCTCGTCTAGCGCTTCGCCAACCTCTAA 3565794 28 100.0 32 ............................ TAAGCGTAGTAGCCGTATAAAAAATCGCTGTT 3565734 28 100.0 32 ............................ AGAAGAAAGTTTATATGACTGTTTACGTCAAC 3565674 28 100.0 32 ............................ AACTGGCAAAACTCACTAATCGAGCGTGACGA 3565614 28 100.0 32 ............................ CTTGTCTTGTGTTCCAAAGTATCTAACCAAAC 3565554 28 100.0 32 ............................ TGAGTCTTACGACTTGGTGCTAAAGAGCGAGG 3565494 28 100.0 32 ............................ TACCACAAGTACGGTTACTTTTATTTTGAGAC 3565434 28 100.0 32 ............................ AGTTTGTCAGGGTAGTTGCTATTAAAGCTACG 3565374 28 100.0 32 ............................ TAAAGCGCAAAACAAAGGTATCTATAAAAGCT 3565314 28 100.0 32 ............................ GCCATAAGAATTTATTGAGCTGCTGCTGATGC 3565254 28 100.0 33 ............................ TACACAAAAACCAGTTAATCTATTAGAGTATTT 3565193 28 100.0 32 ............................ GTAATACGCTCATTGGTCGCATAGCCATCGCG 3565133 28 100.0 32 ............................ TTAGTTAATGTCGATTTTAAGGAAATGAATAT 3565073 28 100.0 32 ............................ GTACCATTCGCCTTTTTTTACTAGCTTTATGT 3565013 28 100.0 32 ............................ TGTAAACCAAAACCCCTATGCAAGTGGTAATG 3564953 28 100.0 32 ............................ GTACCATTCGCCTTTTTTTACTAGCTTTATGT 3564893 28 100.0 32 ............................ TGTAAACCAAAACCCCTATGCAAGTGGTAATG 3564833 28 100.0 32 ............................ ATACCGTGAATACCTGGCGTTAAAAACAGTGC 3564773 28 100.0 32 ............................ TGATTGCATCGAGCAGATAGCCAAAACACATG 3564713 28 100.0 32 ............................ GGTTGAGCGCAACAACCTAGAAACTATGGGTG 3564653 28 100.0 32 ............................ GCTATGGTTCTTCCTAGCTGGCGTGCTGGTCA 3564593 28 100.0 32 ............................ AGTGCCATTCCAGCCTTTGCGCGCAACCTTTC 3564533 28 100.0 32 ............................ TTTCTAAGTATCTTATTATACGCTTATTAAAA 3564473 28 100.0 32 ............................ TGGCAAGGAAGGTCTTGTGGTTTTCTTGGAGA 3564413 28 100.0 32 ............................ AGTGCAAGTACGGCAGGCAACGCTACGCCTGA 3564353 28 100.0 32 ............................ ACTCTTCTTTTTTGACCGTCTTTTTGTTGTAA 3564293 28 100.0 32 ............................ TCAAGTCATTGCCGCTGATAGCGCGTTGAATG 3564233 28 100.0 32 ............................ ACAACCACCCTAGCGGTGGTTTTTTTGTACCA 3564173 28 100.0 32 ............................ TCATGTACCAATGATGCCGCATTTGCATTAAC 3564113 28 100.0 33 ............................ ATTTTGGTCAAGTGATTGTCAATTTCTTCAAGT 3564052 28 100.0 32 ............................ TGCTGCCATAAAGACGCTGTAATCGTTGACCT 3563992 28 100.0 32 ............................ TGCTTTGCAATGACGTTTTTACTAGATTATCA 3563932 28 100.0 32 ............................ ACATAACGCAATCTAGGCGTGTTTGGATTGTC 3563872 28 100.0 32 ............................ GTACAGACTGGCAAAACAGCGCAATCGATAGA 3563812 28 100.0 32 ............................ TCGGTACGTTGTCAAGTACTCAGCTACCGCAC 3563752 28 100.0 32 ............................ TAAAGTCCTTTGATGCTTTGATTGTGCGCTTA 3563692 28 100.0 32 ............................ ATACGGTACAACTGATTGCAGTTGGGATAATG 3563632 28 100.0 32 ............................ TGACAGTTGGACGGCAAACTCTTGCATCAAAT 3563572 28 100.0 32 ............................ TGCTTCATCGACAGTTGCTATATAGTTTTGCG 3563512 28 100.0 32 ............................ ACGAAGTGATAGCAGCTCTAGCAGTGTAAGCA 3563452 28 100.0 32 ............................ ACCAGTTAAGCAGATAAGCAGTCGCAGCCACG 3563392 28 100.0 32 ............................ AGTGGGTAAGATTATCCAAAGGATTCCAGGAT 3563332 28 100.0 32 ............................ GTTCGTCCACTCAGGCACAGTTTCCGTCCACT 3563272 28 100.0 32 ............................ ACATTTCTCGCCAGTTTTTAATCAACTTCATT 3563212 28 100.0 32 ............................ TGTGATTAATACCACCATTGGGATAAAGTCAT 3563152 28 100.0 32 ............................ ACTAGCAGCGCCGCTTATGAGGTTGGTAGCAA 3563092 28 100.0 32 ............................ TCAGTCTTATACTGCTTAGTGCCGTTGTTATC 3563032 28 100.0 32 ............................ TTAACGGTAAACTACTCACGCCACATCCTCCC 3562972 28 100.0 32 ............................ AATAATTTTGCTAAAATCTTCCATATGATTTA 3562912 28 100.0 32 ............................ AGCTTGTAGGTCAGGCAGATGCTTAGGGTAAG 3562852 28 100.0 32 ............................ CAAAGCGAGCTTTTACGAGCGTGGGTATAATC 3562792 28 100.0 32 ............................ TATTGCCCGTCTTAGAAGGCTTAAACATCCAA 3562732 28 100.0 32 ............................ TCGTAAGTTCAGTTATTCGATAAACTCTAATA 3562672 28 100.0 32 ............................ ACCATTGCAAATGATATGGATAGCATTGCCCT 3562612 28 100.0 32 ............................ TAACTACAGAAGCTAAATAATGAACCTAGAGA 3562552 28 100.0 32 ............................ ACATAACGTAGAGGGGTCGCCACACGTTTCAT 3562492 28 100.0 32 ............................ TATAATCCTAGTTTTTTTCTGAATTTTAATAC 3562432 28 100.0 32 ............................ GATATATACGAGATATATGGACGATATGTACG 3562372 28 100.0 33 ............................ TTTTTTTACTAGCTTTAGGTCTTTGTTGTTTAT 3562311 28 100.0 32 ............................ AGACTAAGCCGACCAAATCTAAAAAGTATGAA 3562251 28 100.0 32 ............................ TGTTATCCATGGCTGTAAATCCGTGCGAGCCT 3562191 28 100.0 32 ............................ TACGACCGTATCATCAATCTGCCGAACCAAGT 3562131 28 100.0 32 ............................ TAAGGCCATTGAGGACCCCCGTTATATGTTTA 3562071 28 100.0 32 ............................ ATTCATTCGGAATTGGCGTGCCATAAATATTT 3562011 28 100.0 32 ............................ TACGACCGTATCATCAATCTGCCGAACCAAGT 3561951 28 100.0 32 ............................ TAAGGCCATTGAGGACCCCCGTTATATGTTTA 3561891 28 100.0 32 ............................ ATTCATTCGGAATTGGCGTGCCATAAATATTT 3561831 28 100.0 32 ............................ TGCTCTGCTACGCCTAGCTGTCCTGCAGTAGC 3561771 28 100.0 32 ............................ CATTGACCGCTTGCAGGTGTCTTAGGGTCTTG 3561711 28 100.0 32 ............................ TGCTGATATTGTTATTCCTATTTCTTTTGTCG 3561651 28 100.0 32 ............................ TTTGAAACCCAACCCCAAGGCACAGTGATATG 3561591 28 100.0 33 ............................ GACAGCATAATAATAATACTCAGCTATATTTTT 3561530 28 100.0 32 ............................ GCAAACCCTTATCATATCGACCCTATCCTTGC 3561470 28 100.0 32 ............................ TTGTGCTTAATGTTGCTAAATCCGGTACCAAA 3561410 28 100.0 32 ............................ GTACCGGTTGTATGATGGTGCCGGCCTTGTGC 3561350 28 100.0 32 ............................ ATACAGGTATACCTGATGGCTCTATAGTCGCC 3561290 28 100.0 32 ............................ CCCATCTTGTTTGATTTGTTTAAGATACGCTG 3561230 28 92.9 32 ............AT.............. TGAGTTTAAACAAGCGCAATTGAATCATCAAA 3561170 28 92.9 32 ............AT.............. TCAGCAGATGCCTTACCTGCTTTGATTGCTGT 3561110 28 89.3 32 ...........TAT.............. TTAATCGGTATGACTGCGCCTTTATCGTGAGG 3561050 28 100.0 32 ............................ GCGTCGATGTCGTCTTGTGTGAGTGTGCCCCA 3560990 28 100.0 32 ............................ AATCATTGCTATCAGCTCATCGACAAAGTCTT 3560930 28 100.0 32 ............................ CATGCCTGAGCGCCCTTTTAAGCTCAAATGAG 3560870 28 100.0 32 ............................ TCATCGGCTTGTTCGGCTTGCTCACCATTGCA 3560810 28 92.9 153 ..........................GC GCCGTTAAAAAATTGCATGTCAATTTTAGGCAGCGCAAGGAAAATTCTTTAAATAGAATTTTCAGAAGTTATACTTCCTAGTAAATATCAATAGAATCACACCGCCCAGATAGTTTAGGAATGAAATACTTGAGATCTCGGTAGGATGGAATC T [3560784] 3560628 28 85.7 0 ............CT......T...T... | ========== ====== ====== ====== ============================ ========================================================================================================================================================= ================== 104 28 99.6 33 CTTCCACACCGCTCAGGTGACTTAGAAA # Left flank : TATGTGCATGTAAAAAGCATCAGTGAGGTTGGTAATAAGGCAACGGGCCATGCAGTGGTAAAACGTTATCGCTTTAAGCCAATGGAGATTCAGGCGCACACTCTCGCTGAAAAGCTAGGGGTTAGCTATGAAGACGCTATGGTCACTGTCAAAAAACGCAAACCTGAGTTGAAAGTGCCGTTTATTAATCTAAAGAGTGAAACTAATGACGTGATTTATAGACTATCTATCCTTCAAGAAGTGGTAGATAGCCCAGTTAAAGGAGCGTTTAATACCTATGGTCTTAATACTATGACTACTGGCGTAACCGTGCCCCATTGGTAAGCTAACAAATTGGTAATGACGAATTACCCAAAGATCGGCGTAAAAACCCTTTTTTTGAGCTATTTAAAAACTTACTATTAAATCAATAAGTTATAACAATGTGAAAAATGGAGGGTAAAATAAGGCTTTTACTCTCCAAGCCTTGTTATAACGACTTTTTGAGGATAAAATCTCCT # Right flank : CTGTGACATTCGCTCATACCCAGTTTGCGTAGCTTCCACACCGCCCAGGTTGAGCCCCGTTAAGAAAAGGTCTGGGAGACCTTTTTAGGGGTGCAAGGCAAGAGCAATGCTCGCAGTAAAAGCTTTAAAAAATCATATGCCAACTTTTACTACAAGCAAAGCCTAACGACTACTGTAAGACCAAGTAACTAAAGTCTTACAACTTACCTACCAAGTATATTCCTACGAGTTTGACAGTATAGGTAAGAGTATAATACCATTGATTATTACCTTTACTTACCTCACTTATTAACCAGTGACATGACCCGGAGCACTCCCATGAAATGGACTAAACCAGCTTTTCAAGACATCCGTATTGGTTTCGAAGTCACTATGTATTTCGAAGCGCGTTAAAATTTACTAGAACTAAATCAAATAAAAGCCCTAAATGATTAGGGCTTTTATTTTTTGGAAAAATTAATTTATGTATATTCATGTTTTAGGCTCAGCGGCTGGTGGTG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCACACCGCTCAGGTGACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //