Array 1 205858-204381 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPO01000090.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SALF-297-3 NODE_247, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 205857 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 205796 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 205734 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 205673 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 205612 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 205551 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 205490 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 205429 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 205368 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 205307 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 205246 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 205185 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 205124 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 205062 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 204959 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 204898 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 204837 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 204776 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 204715 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 204654 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 204593 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 204532 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 204471 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 204410 29 96.6 0 A............................ | A [204383] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 223544-221990 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPO01000090.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SALF-297-3 NODE_247, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 223543 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 223482 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 223421 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 223360 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 223299 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 223238 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 223177 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 223116 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 223055 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 222994 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 222933 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 222872 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 222811 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 222750 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 222689 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 222628 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 222567 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 222505 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 222444 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 222383 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 222322 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 222261 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 222200 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 222139 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 222078 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 222017 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //