Array 1 4593-4141 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGOM01000003.1 Legionella pneumophila strain NCTC12024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4592 28 89.3 32 C.....A...C................. TGCTGGATTGTGCCCCAAAGCAAACAGAGACA CAG,C [4581,4588] 4528 28 100.0 32 ............................ AATACGTGGTTATGACCTCATCTAAAGACGTA 4468 28 100.0 32 ............................ ACATGAAGATAAAAAAACGGGCAAAAAGACCT 4408 28 100.0 32 ............................ AAATGCCGACAACGGCGCTTAAAAGGTCTTCT 4348 28 100.0 32 ............................ AGTGAAGCTATTTTTAACTGGGATAACATGAT 4288 28 100.0 32 ............................ TTTTGCCGCTCTTTGAGAGATATTGCTGTTAA 4228 28 100.0 32 ............................ GCGATATTTTTAATCAAGAATTCGAAACATAT 4168 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTTTATTATAATCACCAAACAGATACAAACCTAAAATGGTATCGTCACGAACAATAGTACGACTACCTAAGCCTGCGCTAAGAAGTCCTGCATCATCATCTCCGTATTTTCCTGTAAGATCCAAAAAGAAAGATTGGTTACTATTTCCCATTAAGGGAATCATTGCATCAGCTTCACCAAAAAATCGATTTCCGGCATTACCCCATGCGAAGACACGAGGAGGTAATTTACTTTCTTGTGATCCAATACTTACAGAGGGAAATCCAAAAATAGATGCTACTGAGATGCAAGTTAATTTTTTAATGACTTTATTCATGAACAGCCTCTCCTTGATGCCCATATCTCTATCCGACCATTATTACATTAATAATGTGCTGGATCACTGTTTGTTAAGTTATAGTATCAAGAGCTATTATTCTTTTAACAATAACAACCCCTGTTTTGATTCAAAAAAAACCGAATTGTTAACTCTTTCCTGAAATCCCACTTTTTGTCAGTT # Right flank : TTATTATGTTAAAGGTGTTAGCACGCTACGCAGCAAGGTCGGACCAAGGCCTGACCTTGTTTTGATTAGGAAAGTCTAATCATGACTATAATCTCCATTTCTCTTTATGGAGTACAGCAACCGTTAGTCAAATCTATAAATAACCTAAACAAATAAAAATAAACTCTCTAGTTCCATGGAAATGAGTGTAATTGGATCGAAGTCAAAATAAATTGTGAAGTCTGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGAATCATGAGAATAATCTAATGGTGTACGTTAATTATACACGTATGCTAAAAATTACTACCTGATGAGCTAGGATATTCTCTACCGCGTTGTTTGAATCACACTGAGTCAATCGTAAATTTATTTAGCATTACTGAGAATTATTTAATCCTCAAAAACTCAATAATAAATTTAGATATTTCACAAAATCATACGGTGAATGCTCTCCTGGTTTCGTCAGTTACTGAAATAGTGGTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 14659-11866 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGOM01000003.1 Legionella pneumophila strain NCTC12024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14658 28 100.0 32 ............................ TGATAGAAACCTTGATTGGTCATGTATTAATG 14598 28 100.0 32 ............................ CAAAAAAGAAAATGCAGCTTTAGTAATGATAG 14538 28 100.0 32 ............................ GTATGGACGACTTGCCCTTGAACGAGTACGGC 14478 28 100.0 32 ............................ GTCATCGTACGGCATAAGATCAGTAGACAATA 14418 28 100.0 32 ............................ AGATAAACCAGCCTCAAGTGCTTTCAGTAAAC 14358 28 100.0 32 ............................ AACAGCTCCGTACACGTTAGAGTTACTGTCTC 14298 28 100.0 32 ............................ AGATAAAATTGTCAATACTTTATATTTAAATT 14238 28 100.0 32 ............................ AAAACAATATAGATGTACTGTCAATCATAATT 14178 28 100.0 33 ............................ CTAGTATGTAACGTTAAACCACTGATTTTATAC 14117 28 100.0 32 ............................ TGAACGAGTACGGCGAACCAAGATATTATTGC 14057 28 100.0 32 ............................ AGTGACATATTAGAAACCATGGCTCCAAAGCT 13997 28 100.0 32 ............................ TTCAAATTTGCGTTATAGGGCATTTTCTTTTT 13937 28 100.0 33 ............................ AATTCAGCATAAAAAGCATCTTTAACGTTTTGC 13876 28 100.0 32 ............................ AAAAAGAACATAGCCAGTTTACTAGGGCTTAG 13816 28 100.0 32 ............................ ACATATACCAGCAGTACCAGCAGCATTTGATG 13756 28 100.0 32 ............................ TATCAGACTTAAACGAATCTCACTATAAAACA 13696 28 100.0 32 ............................ GGCGTATAATTATCTCGTATGTATTGCTCTAA 13636 28 100.0 32 ............................ AAAATTGTTTTTCTGCTCAAGAGATGGGGAAC 13576 28 100.0 32 ............................ TATGATGACGGCCTCCACGGAGAACTTGTTAT 13516 28 100.0 32 ............................ ATCACGAATGCACCCAAATTGCCTGTTAGTTA 13456 28 100.0 32 ............................ AATTGAACAGATAGTTGAAGAATCAGTAAAAG 13396 28 100.0 32 ............................ TTCTTAGTCCCTTTACACGCTGGGCATCTAAT 13336 28 100.0 32 ............................ TTGAGAGTTGCTCTTATGGCCTCTTTTGTAGA 13276 28 100.0 32 ............................ TAATTCATGAACGATAGGGTAGGTACTAGCAT 13216 28 100.0 32 ............................ TCATTTTGAACTGTAAATAAACCTTTCGTTAA 13156 28 100.0 32 ............................ ACTGTGGTGAGTATGGTGAGAAGTACGGAAGA 13096 28 100.0 32 ............................ ATGTGCACCTACACCGTGAATGTGCCGGTATT 13036 28 100.0 32 ............................ TCTGAGCTTGAGCAGCTTGAAAAACAAATACA 12976 28 100.0 32 ............................ AAAACGTGCTCCACCATTTAGTTGACGGGTCA 12916 28 100.0 32 ............................ GCTTGTGCCATGCGCTTAACTATTGCCCTTTC 12856 28 100.0 32 ............................ GATATGTGAAGAAGCAAAGCAAGTAATTGCTA 12796 28 100.0 32 ............................ TACTAGCCCTTAGCTATGACGAGCTCGACCAG 12736 28 100.0 32 ............................ GATTGAGATTTCAGTCGAATATATTTTACCTG 12676 28 100.0 32 ............................ TGCCCTGAACTTAGATTAATAATTACTCCATG 12616 28 100.0 32 ............................ GCTTGCACTTAGTAGGTAACGCTATCGTCAAT 12556 28 100.0 32 ............................ TATAAAATTTAATTCAGCGTCATATACCGGCG 12496 28 100.0 32 ............................ TCAGCAGCAAGACCCGGGGTCTGCAACTCAAG 12436 28 100.0 32 ............................ AAAGCCGCCGACATACGCCCTAAACTTGGTGT 12376 28 100.0 32 ............................ TATCTATTTAGATATAGCCTTCTTTCTGTAGA 12316 28 100.0 32 ............................ AGCAGTTCCAGCAGCATTTGATGGCTTATAAG 12256 28 100.0 32 ............................ ACAAGAGGCGCAACTAAACCTAACACAAATGT 12196 28 100.0 32 ............................ GGAATTTGTCGGCCGCATAGACCGCTTTTATC 12136 28 96.4 32 ...............A............ TTAACAGTTAATCTTTCAACATCAGATAAACT 12076 28 100.0 32 ............................ TTACCTCATGACTTGCTTTCTAACCTTTGCGC 12016 28 100.0 32 ............................ TGTCCGCCGTGTCACCGCCTCCGGAACCTAAC 11956 28 100.0 32 ............................ CAATTCGAACAAAACATAATCCTCAGGATTCT 11896 28 85.7 0 .................GG....G...G | G,TT [11871,11874] ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGGCACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTATAACTATTTTTTTAAGATTTAGAGCAGA # Right flank : AACTGACAAAAAAGGGGATTTCAAGATTGAGCCCATCAATCCGTGCAATTTTATTGCAAATAATTAAAAATGTACGCGTTACTTAAGTAACTTTCCAAAAATGTTGTTTTAAATGTTTTTCCAGTTCCTCAACCATTGCTGCAATATTAATATCACCATTACTTTTTTTAAAACTGTACTTTCCGGTAAAGGCAATATGCGCCCAAGCAATAGGTGATATTCTAATAAACTCATCAATAATGTCTTGGCTAACCCCTTCTTTAAGCATTTTTTCATAAATAGTATTCAAAATAATGCCGTTGTAGGCAATGATACAGTTTGCAACAAGTCTTACTGCGTGTGCGCTGACTCGATTGTTAACAATTTTCTTTCCCTTGAAGACCCCACGATAAACCTTCCTAATGAGACCTTGCAATTGGTGATACGCCTCGGTCCGATTTCTTGCCGCACGAATGGCTTTCCTAAGCGCCATGTTATCTATTAGATTTAATACATGCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //