Array 1 8960-10880 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOGE01000027.1 Escherichia coli strain AVC162 scaffold_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8960 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 9021 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 9082 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 9143 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 9204 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 9265 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 9326 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 9387 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 9448 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 9509 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 9570 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 9631 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 9693 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 9754 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 9815 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 9876 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 9937 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 9998 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 10059 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 10120 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 10181 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 10242 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 10303 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 10364 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 10425 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 10486 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 10547 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 10608 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 10669 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 10730 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 10791 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 10852 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18060-16994 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOGE01000004.1 Escherichia coli strain AVC162 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18059 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 17998 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 17937 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 17876 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 17815 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 17754 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 17693 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 17632 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 17571 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 17510 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 17449 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 17388 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 17327 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 17266 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 17205 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 17144 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 17083 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 17022 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //