Array 1 52157-53937 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXKM01000001.1 Listeria monocytogenes strain PNUSAL000246 DYZ48_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 52157 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 52223 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 52288 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 52352 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 52418 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC 52483 29 100.0 36 ............................. CTTCCTACTTTTTGACATGAAAAATAAGCCGAGTTG 52548 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 52613 29 100.0 37 ............................. GTCTTTGCATTTGATGATGATTACTTTTTTAAAGTCT 52679 29 100.0 35 ............................. ACGAGTATCAGCGCTAAAAGAGATTGTTAAGCGCC 52743 29 100.0 36 ............................. TTAAGAACATAAGCTTCACTCTTTAAAGGGAGTAAA 52808 29 100.0 37 ............................. AGTATCGCCTTCGCTAGGCGTTTCGGGCGGCGTTTCC 52874 29 100.0 36 ............................. ACTTTAGAGAAAGAAAAACAAGAAAAAGTAAAACTG 52939 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 53004 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 53069 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 53134 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 53198 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 53263 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 53328 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 53393 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 53456 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 53519 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 53585 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 53648 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 53713 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 53779 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 53844 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 53908 29 93.1 0 .......................A....C | C [53931] ========== ====== ====== ====== ============================= ===================================== ================== 28 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCGCAAGTAATTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 7863-5315 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXKM01000002.1 Listeria monocytogenes strain PNUSAL000246 DYZ48_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7862 36 100.0 30 .................................... ATCAAATACTTCTGTTAATACTGGATGGCT 7796 36 100.0 30 .................................... TTTATGATACTTTGTTGTTGTGCGCCGGAA 7730 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7664 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7598 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7532 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7466 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7400 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7334 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7268 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7202 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7136 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7070 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7004 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 6938 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6872 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6806 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6740 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6674 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6608 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6542 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6476 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6410 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6344 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6278 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6212 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6146 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6080 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6014 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 5948 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 5882 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5816 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5750 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5684 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5618 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5552 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5485 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5419 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5353 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5318,5321,5326] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //