Array 1 2239875-2241222 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIGD01000002.1 Pseudomonas aeruginosa strain KOL14.W.495.20 Scaffold_2_length_3493468_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2239875 28 100.0 32 ............................ AAGGACTACGTGTTCAGCAGTCTCGGTGGCGT 2239935 28 100.0 32 ............................ GCCCGGTCAACTGGCAGCCACTTGTTCGGGCG 2239995 28 100.0 32 ............................ GATCAGGGTCATGAGAGACACCGCTAAAGTAA 2240055 28 100.0 32 ............................ GACGAATCCGGGCGATGGTGGCGGCGATGGTG 2240115 28 100.0 32 ............................ TTGAAGGCCATGGGCGTGTAACTCGACGGCAG 2240175 28 100.0 32 ............................ TTTGAGGGTATGACCATGAAGCGAATCGACGA 2240235 28 100.0 32 ............................ TTGAAGGCCATGGGCGTGTAACTCGACGGCAG 2240295 28 100.0 32 ............................ TTCCTCGAACACGCCATCAGCAGCCTGGAGGT 2240355 28 100.0 32 ............................ ATCGCCGGCGCCGAGCGCGAGACCGTCTACGG 2240415 28 100.0 32 ............................ ATCAGCGGATCGGCGCCCATACGCTGCGCCAT 2240475 28 100.0 32 ............................ TCGCTGACGATGACCGGCGGCGCCTCCGGCTC 2240535 28 100.0 32 ............................ GCTGATCGCCAAGCGCGACAAGTCGACCGGCC 2240595 28 100.0 32 ............................ TCGGGGTGGCGGGCCAGGTTCAACGCCAAAGC 2240655 28 100.0 32 ............................ ATACTTACCAGTCGCTCCAGGCCCTTCTTTTC 2240715 28 100.0 32 ............................ TGGTCACTTGGCGGCCTGCTGGCGCTTCAAGT 2240775 28 100.0 32 ............................ ATGAACAGCGACACGGCGGCAAGGTAGTGGGC 2240835 28 100.0 32 ............................ ATATCGTGCCTGTCTTGCAGTCCTATCACCCC 2240895 28 100.0 32 ............................ TCGAACATCGGCGAGAGAACGTCTGGCTCACA 2240955 28 100.0 32 ............................ TGCAGGCCGCCGTCGAGCAATCCGCCGAGACG 2241015 28 100.0 32 ............................ TGTCGTTGTTATCGCTGTCCTGCCATTCGTCC 2241075 28 100.0 32 ............................ TGGACATCCTCACCGACCTGATCGCGCAGCAG 2241135 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2241195 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAAGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2251160-2249751 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIGD01000002.1 Pseudomonas aeruginosa strain KOL14.W.495.20 Scaffold_2_length_3493468_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2251159 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 2251099 28 100.0 32 ............................ GAACAAATGCGGCAGTGGCTCCTCGATCTCCG 2251039 28 100.0 32 ............................ ACCAGTTCCACCGCCATCACCACCAGGGTCTT 2250979 28 100.0 32 ............................ CTTCAACCTCGCGGCATCCGCAACAACAACCC 2250919 28 100.0 32 ............................ TGGAATGACCGGCCCGTCGTTGAACAGCACGC 2250859 28 100.0 32 ............................ AGTACTTCGCAGCGAGTAATTGCAGAACCCCT 2250799 28 100.0 32 ............................ TGGTGCTGATGGAGCATCACGACCGGCCGAGC 2250739 28 100.0 32 ............................ ATCCAGTAAGCCCGCTCGCCCTGGCGCTGGGT 2250679 28 100.0 32 ............................ ACTCCTCAGGCGTATCGAACTCGACCCACTTC 2250619 28 100.0 32 ............................ CTCACCTGCTGGCGAAGCTGGATCGACCGGTA 2250559 28 100.0 32 ............................ GGCACGACGTGCGTCAAGACGCCGACTGACCC 2250499 28 100.0 32 ............................ GGCATAAGTCGGTGGCATCCGCGTGTCGTCGA 2250439 28 100.0 32 ............................ GCATGCAGGTGCGAAGAAACACCGATTTCACT 2250379 28 100.0 32 ............................ ATGTGGTCGGCGTAGCTCCAGGGGCGATGGGC 2250319 28 100.0 32 ............................ TGCATCTTCACGGTGACGGTTCGACCGTCCTC 2250259 28 100.0 33 ............................ ATGGCGGCTCCTGTCGATGATAAGCGCCTGCAT 2250198 28 100.0 32 ............................ TTGGCAAAGCTGCTGCTGAACTATCGAAAGGT 2250138 28 100.0 32 ............................ AGTTAGAGCCGGCAGTCGGCCTGCTGTTCGTT 2250078 28 100.0 32 ............................ AACCGGTCGCAAATGACTGCAAGGGCTGCTTC 2250018 28 100.0 32 ............................ TGCGCCAGGTGCTCCACCAACGCGAGGGGGCT 2249958 28 100.0 32 ............................ ATGCACAGCGCGTCGATCCGCGGCAGCTTCAC 2249898 28 100.0 32 ............................ TTTCCTCGGTGATGCCCCGGCGAACCGGGGCG 2249838 28 100.0 32 ............................ TGCGCGCCGAGGGCGAAGACCTCGAGCAGAGC 2249778 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGTTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGGAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTTCTACCCAACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //