Array 1 85179-87387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPV010000002.1 Anabaena sp. FACHB-1237 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 85179 37 100.0 38 ..................................... CTGGAAGCTATCAAAAAAGGAGTGCGGTCATTTGTAGA 85254 37 100.0 37 ..................................... CAATTGACGATGAGTCAGGTCTCCAGTTATTACCCAA 85328 37 100.0 36 ..................................... AGATTGTAGAATTGAGTTCTGTTGATTTTCCAGAAG 85401 37 100.0 36 ..................................... CTATTAAGCAAAATCTATCCCCCACTCTAGCGGAAG 85474 37 100.0 38 ..................................... GGGAGCGACAGTTAGCTGATACCTACCTATCTGATGTT 85549 37 100.0 36 ..................................... CTTTATGGTTGTTTATGGATGAGGACGATTCCTCAA 85622 37 100.0 37 ..................................... CAAGGTAAAAATATTTTGCGACGTAAGGGATGGACCC 85696 37 100.0 43 ..................................... GCGGCAAAGAACAATGGAAATGGCTGGAAACAGCCGCAGAAAA 85776 37 100.0 35 ..................................... GTAAGTGCTGTTACCTTAGCAGCTTTAAGATACAA 85848 37 100.0 38 ..................................... TCTTGCTGTTTGATACCTCCTAGTTTGGGAGAAGGGGA 85923 37 100.0 32 ..................................... ATAAACAAGACTAAGCTGCTATTAGAAACCTT 85992 37 100.0 37 ..................................... TCTACTACCCGATGATACAGCGTAGCAGTGACACAAT 86066 37 100.0 39 ..................................... ACGCGGAAAAAGCTGTGGAGGTCTGCACCAAGCAGGCAA 86142 37 100.0 39 ..................................... ATACAGCCTAATTCAGAGGAATCTGCCCCTGATTTAATA 86218 37 100.0 38 ..................................... GTCGTCTTCAACTACGCCGGCTTGTTACACATCAAGTC 86293 37 100.0 40 ..................................... AGACACTTTCGCCTGAAATTGGATGGAAGGATATTTATGT 86370 37 100.0 42 ..................................... TGCGTACAAAGCAGCATCTATCTTTGAAACAAAAGATGGTGT 86449 37 100.0 36 ..................................... TCATCAAGTAAATTGTCAAGGGATCATGGGAGCAGG 86522 37 100.0 42 ..................................... GCACCAAAGGTCGGAAGATACCTAACGTGCCCGCTGGGTACA 86601 37 100.0 38 ..................................... AGAAGTGGGTGGATTATTTATTACAGGAGCAAACTTAT 86676 37 100.0 38 ..................................... CTGTAATCCTGATGCTGACTCCTGGGTCGCTAAGTTAG 86751 37 100.0 36 ..................................... TTTAACGGAAGCTAAACAAAAGCTCCGTCAAGCGGA 86824 37 100.0 38 ..................................... GCTTTGATGGTCTTCTAGAAGAAATAAAGTCTGGTGAA 86899 37 100.0 42 ..................................... CTGCGTGGAATTTGTTGAGTGTTACAGACCCTTGTTACAGAC 86978 37 100.0 37 ..................................... TGTGAACCAACGGCTGTAAGGAGCCTTGTATTATGTC 87052 37 100.0 37 ..................................... AAGGAGGGCTAAAATCCCTCCAGTTTAAAACCACCCT 87126 37 100.0 38 ..................................... CTACCAGAGAAGCATTACCGCTCTGAAGGGTATGTAGC 87201 37 100.0 41 ..................................... CGTCATGCGGAAGAACTAATGGCTAGGATACAAAGGGAGGT 87279 37 100.0 35 ..................................... CTTTCAGATTTTTACTATTTGGATGAGAGAGGATA 87351 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 30 37 100.0 38 GTTTCCATCCCCTTGCGGGGAAAAGGTGATCAAAGAC # Left flank : TGGACATTGCGCGTTTATGTCGGGGATGGTCAGAGTTTCGATTTTAGGATGATTATATTTGAATAAGCGATCGCGCAATTGGGAGTAGGTAAAGTTTCTCGGAAGTTCTTCTATCCAGTTTTCTTCTCCATACAATTTGGTCAGTATTACCCATAATCGCACGGAACGATGTAACCGGTTGCCTAGTTGTCCGGCTGCTAACCAATGTAATATTTGTGGTGTTGCTGGATAAAAGAAGTTCACTGTAGCATTTTCTAATGGTTTCTATTTGTTTATTGTAATGGATTTTGGTGATGAACTACAATATCCACAACAATATCCCGGACTTCTTAGAGAATTTGGGGATCTGATTCGCAGATTTTACAAATATAATATCACACATATCATTATTGACGATTTTTGTCCAGTCTCAGGATAGTATCAGGGTTGATACGTCTGCATAGTTCTAGTTTTTCCACACTATAAGCACAACAAGTACAGATGTTAAGGTATCTCTATGT # Right flank : CCCTATACCTACTGACCTGCTATCACAACTGGCTTTCAGAGTGCATTTGCACCGAGCCACGGAAACAAAAGTGTGATATTTTTAATAAGTATTCAATTTTCAAGGTTCTGAGTGCCGTTTTCAGCTAATAAACATAATATAAAACAAAAACTCCAAGAAGTCAACCCCTAAAACCAAAATTTTCTCAAAATTACAAAAGATTAATAAATTTAAATAGTTTTAACTGCCTGCGCCGAACTTAGTTTAATTACTTACAATCTGTAACAGTCCCCTAAATGCTGATATAGAGAGTATTTGGAGTAAAAATACCCTTCCAAATAGCAGCAGAAAAAGTAACGAAAAGTTTACAAAAGTTCGTTACAAAAAGTCATTACAAGATCAGATAATCAGGAGGTTCATAGGGAGGTTCCCCACCAAAAACCTTAGTATTTTTCTTAGCGGTTTCATCCAGGGGATAAATACGCAAATTATCTTCACTTAACTTTAAAACTGGCAACCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCTTGCGGGGAAAAGGTGATCAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 36665-36843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPV010000020.1 Anabaena sp. FACHB-1237 contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 36665 36 100.0 36 .................................... TTTCTATCCCCAATCTCTACGATAAAATTATCCCCA 36737 36 100.0 35 .................................... AGTAAAAGAATTCCCTCGGAAATATATCGTTTGTG 36808 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 100.0 36 CTTTCCTAACCTATTTCCCCGCAAGGGGATGGAAAC # Left flank : CATCCTTGTAAGCATCAACCTAGATTTCCATAAAACAGACAAGGAGGAGAAATAAGCTATTATTTAAGCGGCTTGACTGAGGCAGAAATTTAATCTTGGTAACTGATTCCTCCACCTAAATCACCTCGTTTAGCCGCTTTTAATTTTCAGTCAATGATTAACTGCATTATAGCTGATCATATCACATCCAGTAGCATTCAGCAGTCAGCTTGACATGGAAACTAATTGTTAATAAATGTATCAAAATCATAATCACTAGTTGACAACTGCCCGGAAAACAGATACTTCTAGCAATTATGTATCAACAATTCGACACCACTCCCCTGAACCTTGAAAACCGCATAATCTCGTTGACTGGTGGCGATTCCTTACACAGTAAGGGTTTCAGCCTCAAAAATCTCAGAATTGTTGAGATTTTTCGCCCTTTATTGAGAATAAAAAAAGTGGTGTCGAAATGGGGGTCTGAAAGTATTGCTACGCAAGGTTTCCAGAAGGTAGCC # Right flank : CATCGTATGCTCAAACTGTTTGATAAGATTAAAAATTGGAAAAATATTTCTCAAATATGTCATAATGGAAAGACTTTATTATCCAATAAATCACCTCTTATGAAAAAAATAGAAATAGAACTAGATTAAGAAACTTATGACAAAATACAACAACTAACTCAGACTAATCATTGTCAAATATCAGACTTGATTAAAGCAATGATTGAACAACTGACTAAACCGGAAATTCTCAATGATTCATTTATTGGGAAATGGTCAGATGATGCGGAATTACAACTAATTGAAGATATGTTAAAACATAGAAGCTAAAGAAGACTAAATTAACGGTGAAAAACAAAACTTTAATTGATACAGATATTTTTGTACATCATGAGATTATGAAACGCTATGAACTTTAGAAATATCTTCTTAAAGAGTCTCATAAATAGACAAAAATTCTTGACGAGAAATACCAGATTGATTACAAATACTTCTCAAAGTTGAACCTTTAATTTTTTTAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTAACCTATTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 58865-61810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPV010000023.1 Anabaena sp. FACHB-1237 contig23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 58865 37 100.0 34 ..................................... AATTCGAGAAAGTTTTTTGGTAGCCATAAACAGG 58936 37 100.0 34 ..................................... TTTTGGGGTTAACAAACAAGAGTCAAATCATTTC 59007 37 100.0 34 ..................................... GGCCAAATGTCCGATGCTGAAATTGAGGATTGTG 59078 37 100.0 38 ..................................... GTTTTCAAACCTCCTATAATTGCTTTCAACAATGCCCA 59153 37 100.0 36 ..................................... CATAAGATTTAGAAATAGCTGACAACTTTGACTGAA 59226 37 100.0 40 ..................................... AAATCATTTTAAATTCCCCGGTAACACGCCAAAAAATAAC 59303 37 100.0 35 ..................................... CAAGAATTACCATCGGAAACCCAAGAACAGATTTA 59375 37 100.0 35 ..................................... CTAGCCAAAGAAAATCTATTTCCATAAGTATAATT 59447 37 100.0 35 ..................................... CTTATGTGTAGCGATGAACAATTTTATTACTTATT 59519 37 100.0 35 ..................................... TCTTAATTGAAGATTTAAAAATTAAAGATTTAGTT 59591 37 100.0 34 ..................................... TCCCATATCTTCCACTCTGTGAGTTTATTATTAT 59662 37 100.0 34 ..................................... TTCCAGCATTTTAACCACCAGGTCGTAGCCTATA 59733 37 100.0 33 ..................................... TCAATCCTGAGAAATTCTACTCTCATGTAGAAA 59803 37 100.0 34 ..................................... CTAGCCAAACTTAATATTACACCTGAGATGTCTG 59874 37 100.0 41 ..................................... TTAAGTTTCTTATCGTTCAAAAAAGGGATATAATTTAATGC 59952 37 100.0 36 ..................................... CGAGATCGCTACAACTTTTTTTGCCTAGTGTAATTC 60025 37 100.0 35 ..................................... AAATATTCACCCGCTTTAGAGTAAAGCGTGGTGTA 60097 37 100.0 35 ..................................... TTAAACAAGGATACCTGAGATTCCTTATTTACATT 60169 37 100.0 42 ..................................... AATGAAAATTATTAACGCTTGTATGGCGATCGCATCAGAAAG 60248 37 100.0 35 ..................................... CTTTTAATAGCGGTTTCGGAATAATCAAAAATCTT 60320 37 100.0 34 ..................................... AGTACGAGCGATCGCCCCCACACCTAAGATTTTT 60391 37 100.0 34 ..................................... TTTCAGGAGGTTGCGCTTGCCCCGACATAAGGAA 60462 37 100.0 41 ..................................... TAATAATCCTTATGTCCTGGGATGCCCAGGGCATAACTCCA 60540 37 100.0 35 ..................................... TAAACTTAGCTCAGTATTAGAAAAAACAAAAAAAA 60612 37 100.0 35 ..................................... TAGCCAAATTAATCATGGCTTCTTGTTTGTCTTTA 60684 37 100.0 35 ..................................... TCTGTAGGTACCACGCTTACACATCCCACAACAAC 60756 37 100.0 33 ..................................... TTTACCCTGGGAAACTAACAATTCTAGTTTCTG 60826 37 100.0 39 ..................................... TTAACTGTTCTAACGATAGACTATACAGAAAGTAAAGTC 60902 37 100.0 36 ..................................... CTGAAATTTCATAGCCCTTTTCAGCCATTCTTGCTA 60975 37 100.0 33 ..................................... AATGCTGAAAATCAGAGACATAGAATTGCTTTA 61045 37 100.0 33 ..................................... AATGCTGAAAATCAGAGACATAGAATTGCTTTA 61115 37 100.0 35 ..................................... CATCCAGCATTGTACAGATTGATAGACGCTAAAAA 61187 37 100.0 37 ..................................... TCGTACTCGGATGGATTGGTTTTTCCTACATAGGGAT 61261 37 100.0 35 ..................................... CACAAATTAGCACGAGATTATGTTGCTAAAATTGT 61333 37 100.0 35 ..................................... GCGCTACTTCCTGCTTGCTGTAAGGAATCAGCTTA 61405 37 100.0 35 ..................................... GAAGAAAAATTGATAGAGAATTGGTCAGAATATCA 61477 37 100.0 41 ..................................... ATGAAAACAACTTATAACTGTCATGATGTCAATCAAAAAAA 61555 37 100.0 34 ..................................... GATTGGAGTACAATCTACTGGAGAATCCAATCCA 61626 37 100.0 40 ..................................... ACAATTATAATTGTAATATATAGCATGAACAGGATGTGAA 61703 37 97.3 34 ............................A........ TAAATCATCAATATCTTTGCGGGATTGCTCCAAA 61774 37 94.6 0 ..................A.C................ | ========== ====== ====== ====== ===================================== ========================================== ================== 41 37 99.8 36 GTGAAAATCGCTGTAATAGGTGATTTTGGATTGAAAC # Left flank : TGCGTTTATGTTACTGAACGTGATTTAGAGTTATTTTGGCAAGCATTAATTAAGGCTTGGGAGTTCGATCGCTCTTCTGCACGAGGTTTTATGGCTTGTAGAGGTTTGTACATTTTTACTCATGCCAATAAATACGGTAGCGCACCTGTACATCAATTATTTGATCACCTGCAAATTATGTCTACTGTTGATGTACCCCGCAGTTTTGCTGATTATCAAGTTAATTTAGATGCGGTGTTACCTGATGGTGTCACTTTGACAAAATTAGCCTAAATTGCGCGGATGGGTGGGTGTAAAAATCCAGATTTTGGGAAAATCCTGGAAACTCTGATTATCACTGAATTTCCAGCGATCGCTGCTTACAACCACCCGCGCACCTTACAGTGTAAAGGTTTCGGTGTTTTTTCCCTTTGTGCTTTTGTTTGAAATGGAGTATTATTTTGGCATCCGCGCAAATCGTTCTGGAAATTTCCTATTTTCAATGCTTTGCGAGGCCAGCA # Right flank : CACTAATTACAAATTACACAAATTACGTGATATAATGGCTTTTGAGATAATTTTAATCTATCCATGATTTTTACTAATGTATTTATAACAATAGCAACCAATAACATAGAAAAATTAGTAGTTTTCTATGTTAAATTACTAGAACAAAAACCGCAGAAATTAATTAATAATGTTTATGCTGAATTTCAATTATCCAGCTTAACATTAGGAATTTTTCAACCTCAAAAAAATCATCAATCAGAATTTTTTGCTAGTAATAAAAGTCCTATTAGTTTATGTTTTGAAGTGACTAACTTAGAAAAGTGCATATCTGATTTAAAATTGTTAGGTTATCCACCTGTAGGTAAGATTAATATCGCCTCTCATGGTTATGAAATCTACGCTTATGATCCCGACGGCAACCGTTTAATTTTACATCAGTCAAAGGAGCAAAAAACAGAAAAATCTCATGTTTGAATCATGTTTAAATCATGTGGAAATTATGTGGAAATCATGGTAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAATCGCTGTAATAGGTGATTTTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 37397-40497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPV010000026.1 Anabaena sp. FACHB-1237 contig26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 37397 37 100.0 35 ..................................... TTTTCCATCTTTTCCTTATTTATATGATCATCGGA 37469 37 100.0 38 ..................................... TAGATGCTCAGAATTGGGCAAATTGGATTAACTCCAGG 37544 37 100.0 35 ..................................... TCATAGTTCTCAAACATTCATTCATAACCTCAGAA 37616 37 100.0 37 ..................................... ATTCCCAATTTATGGATGAAGCTAAGAAGAGACTTGA 37690 37 100.0 35 ..................................... GTTGAATATGAAGCCGCTAAATACGGCTTTAGCAT 37762 37 100.0 35 ..................................... AAGCCAACTCCTCCCAAATTTCTCTATTTGCTCAT 37834 37 100.0 37 ..................................... AAATATTAGACTTGCTTTGGCTTGCTCATTTAGTGTT 37908 37 100.0 36 ..................................... AAGAAAACTGCTAATCTTCTTAGTTCGGAGGGTGAT 37981 37 100.0 41 ..................................... TATGAAAACACATAAAATTATCAGGAATGAATCAGGCTATT 38059 37 100.0 37 ..................................... AGTCTGCTGATGTGGCTAAAACCCTTATGGCTATTGA 38133 37 100.0 40 ..................................... CACGATAGCTATAGCAGAATCAGGACAAAAACACATTATT 38210 37 100.0 34 ..................................... TCTTAATTGAAGATTTAAAAATTAAAGATTTAGT 38281 37 100.0 36 ..................................... TTTACGCTTCCTTTAAACCTATCTTGCTCTATTAGA 38354 37 100.0 35 ..................................... GTAACATCACAAGCAGTCTTGTACAGCAAGAGTTA 38426 37 100.0 37 ..................................... AAGATTGAAACCATTGATAAGGAAGGGAAAAAAATTG 38500 37 100.0 38 ..................................... CTTTTTTACCTGATACTTGTTTGGCTTCTTCGCGGTAG 38575 37 100.0 35 ..................................... CGTCTTTCCTCCTTCCAAGATCATCTGCTTCAGAA 38647 37 100.0 41 ..................................... AAATATTTACGGAAACTGCACTTTTAAGCGTGTTTAAGGTG 38725 37 100.0 34 ..................................... ATCCTCGTGTAACTCCCACATTCCACGACGAAAT 38796 37 100.0 35 ..................................... AGGGATAATGGCAGCGACTAACCTTATTCCTAAAA 38868 37 100.0 40 ..................................... GGTACTCTCTCTTTGTGAATACTTGTTTTTCAACAGAATC 38945 37 100.0 34 ..................................... ACAGAACCATCCACACCCGAAGCTAAACAGTGGG 39016 37 100.0 37 ..................................... TCTTGCCTGCTTGTATTTAATTACTGTATCTTCTCCG 39090 37 100.0 34 ..................................... AAATATTTCAGTAACTACTTCTATATTTACTGGT 39161 37 100.0 39 ..................................... AGTATGTAACCCAGCAAGTGAAACATTATATTAAAGCCA 39237 37 100.0 36 ..................................... ACTTAACTTACTAAAATGGAAAAGACTGTACTATCT 39310 37 100.0 34 ..................................... ATCGAAATGGAAGTCCTCTTCATGTACTTTTGAA 39381 37 100.0 37 ..................................... AAGAAAACTTCTAATTTGAAACAGATATTGCTTTTTT 39455 37 100.0 34 ..................................... AACCCAATCTTCATGAATATCAGCAGACATACCA 39526 37 100.0 37 ..................................... ATACCATCTTGAATTACGTGCATAACTAAAACCTCAA 39600 37 100.0 35 ..................................... AGGTCTAATAACCCTTACAACAGGATCAGGGGATA 39672 37 100.0 35 ..................................... GCTGTGGATAGCCATGCCTGTCCTTGGGGAGCAGT 39744 37 100.0 35 ..................................... TGGATACCCAAACCCGCAACGCAAAACAAAATAGC 39816 37 100.0 36 ..................................... AAAACTCTTCATCTCTTAATAGGCGATAGCCTTGTT 39889 37 100.0 34 ..................................... CTATTACCCCAAAGGGATTGACGCACCCAATGGG 39960 37 100.0 36 ..................................... CTTGTTTAAGTTTCATACGCTCTCTAAATTTTTTTC 40033 37 100.0 35 ..................................... GCTTACCTTCACTAGTGTTATAGCTCCGCTTTGTC 40105 37 100.0 36 ..................................... TAGTTTCTCGGTCACGACTCCTGATTTTTTTTCCCT 40178 37 100.0 32 ..................................... AAACATTTTTATCTCCTTATTTGTGTATTTTC 40247 37 100.0 36 ..................................... AAATCTATGACTGCACCAATATTAACTTTACCTCCA 40320 37 100.0 33 ..................................... TTGTACGATGTAAACATCGGAAAACAAGGCTAG 40390 37 100.0 34 ..................................... AGTGCGATCGCTCAAGTCGCCCCAAGTTAGCCCG 40461 37 91.9 0 .............A.................A....G | ========== ====== ====== ====== ===================================== ========================================= ================== 43 37 99.8 36 ATTGCAATTTCTACTAATCCCTATTAGGGATTGAAAC # Left flank : ATGAATCTTGTGGTTTCTTATGATATTTCTGAAGATAAACGACGCACTAAAATTCACAATATCCTCAAGTCTTATGGACAATGGGTACAATATAGTATTTTTGAATGTGAATTGACTGATACTGAGTATGCTAAACTGCGATCGCGTCTGAATAAACTGATTAAGTCTGATACCGATAGCATCCGTTTTTATTTCCTTTGTGCTTGCTGTCATGGTAAAATAGAAAGAATTGGTGGTGAACAACCCCGCGATCATACTGTTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAAAATCTAGGTGGGCAAAAAATGGCTGGAATGTTTTCTACATCAGCTTTTGATATGTTTTATCCAAGTTACCCACCCGCGCACTTTACACTGTAAGGTTTTCATTGATTTTCCCTCTTGACACAATTCTTGGAATCAACTATAATTATGGCATCCGCGCAACCGAACCTTGAAAACTAAATATACCAAGGCTTTCAGAACCCTGCT # Right flank : GTGAAATTCACAGTGCAGAACATTTAATCGCAATTGCTTTATCAGGAAATCCTCCATCTGAAATTGCAGAAAAACTCAAGGATTTATTTGTAAAAATCAATATTCATAAATATTTTGCCTGTGGTGGTTTAGTATTTGATGCAGCTAAAATTGAAATTCTTAGGTAGAAATTAACTTGACTAAAAAACTGATAATAAAATTTTAATGGTAAATAACCATCGTCTTCACCTGAATATAAACATTCAGTTTTTTCGGCAAAACATTGAAAAGCGATCGCTTATTTTATGATATTATAATCACATTCAATCCTCAACTTATTGAACATCAATAATGGTACAACCGCGTAAACAATTTGCCCAACATTGGTTAAAAAGCGATAAAGCCCTAAACGCCATAGTCAAAGCAGCCGACTGTCAAAAAACCGATAGAATATTAGAAATAGGGCCAGGTACAGGAATTTTAACTAAGAGATTATTACCCTTAGTAGAATCTTTATTAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 4974-6892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPV010000027.1 Anabaena sp. FACHB-1237 contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4974 37 100.0 34 ..................................... CTAATAATGAAGCAATTTCTAATCTAAATTGTTC 5045 37 100.0 33 ..................................... CTTCTAATTCAATATTCTGATGTGCAAGTTTTT 5115 37 100.0 35 ..................................... TTCTATATCTAATTCCCGGGTTGTTGAGATATGGA 5187 37 100.0 35 ..................................... AAGTTCTGACTAGCCATACTGCTATACCTACTAAA 5259 37 100.0 38 ..................................... AACTACCAATCACAACTACAACCACTACATCCAGAAGT 5334 37 100.0 36 ..................................... GATTGCTTCAATAGTAGAACCTGATAAGGAATCTAA 5407 37 100.0 35 ..................................... GCCTTAACACTACTGGAATGGCAAACACAGATAAA 5479 37 100.0 34 ..................................... TCATTCTTCAAGCACACAGTTGCTATTTGAAGAA 5550 37 100.0 37 ..................................... CTAAACCACTCCGCCTTTAAAATGATTGATAATACTA 5624 37 100.0 36 ..................................... TTCTCTCTGAGAGATTATCATACCCATTAGGAGTCT 5697 37 100.0 35 ..................................... TAGTGAGCGATCGCGCTACTTCCCATCTAATTCCC 5769 37 100.0 35 ..................................... AGTAGAAATACTTAGGATATATACACATACGCATA 5841 37 100.0 33 ..................................... CATGAATCAGAAATAAGCAATTCATAATTTGTC 5911 37 100.0 35 ..................................... AATTCAGGACGAAGTTGATAAAACTTTTGACAAGA 5983 37 100.0 34 ..................................... TGGCAATATCTTCCTGTGTATGCGCAAATTCTTG 6054 37 100.0 39 ..................................... AGTATTTTCTTTTCAGTTTTCCTTAATTCAATTTCTAAA 6130 37 100.0 34 ..................................... CAAGTGGGTATGTAACAGCTTCCCACGACACCAT 6201 37 100.0 35 ..................................... GGTGACGTACTACCAAACACATCATTTAATATGGC 6273 37 100.0 33 ..................................... ATTTATGAGGCTACTAATGATCAAATCGATCTC 6343 37 100.0 33 ..................................... CTTCATAAACACGACATTTCTGACAAGGAGACT 6413 37 100.0 39 ..................................... ATAAAACTTGAATGCAAAAAGCACAGGATACCTCTTGAA 6489 37 100.0 41 ..................................... AGAAATAATCCATCCTTACGTGAATAGAGATGGGGCTAAAG 6567 37 100.0 38 ..................................... ATAGCTTTAAGGATTACTTACAAAATAACCCTGTTAAA 6642 37 100.0 34 ..................................... AGGATCTGTGAAATACCTGTACTGCGTACTTTTA 6713 37 100.0 34 ..................................... TTCGCCGCCCTGCGCAACGGTAGTCCAGCACGGT 6784 37 100.0 35 ..................................... CAAAAAACTCTAACAAACCTCCTACATAATCAGAA 6856 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================= ================== 27 37 99.9 35 GTTAAAATTCTCTATAATCCCTATTAGGGATTGAAAC # Left flank : ATACAGATAATGTTTGGTTGACTCAACAATCACAACATAATGCAGATTATCAAGCGATCGCTTCTACGGCATTATTTACTAAACAAGGTAATCTTTCTTATCGTCCTAATTCTCAGCAAGTTATGTTATTAGTCCGATATTTGGAGAAGATTAAATCTAGCACTTTACAATCTTTGGATGAACCATGCAGTATTAATTTACAACCGTCTCCTCTTAAGTTAGCTGATAGGTGATAGATTATAAGTGGTAAAATTTTTGCCTAAGTGTTGCTAATTGCGCGAATGGGTGGGTGTAAAAATCACCAATGATGAAAAAATGTCTCAACTCAATTGTTCATAAGGTTTTCCGGGTTTTTTCTTTTTGACACACTCGCGCACTTTACACTGTAAGGTTTTTGGCTATTTTACCTCTTGACTTTTTTTCTGGAATGGACTACAATCATATCACTCGCGCTACCGAACCTTGAAAACTAAATATTTCTAGCCTTTCACTACCCCACG # Right flank : TGGCAACTAAGCTATCATAGAGAATAGTGGTTTATGTAATAAAGTTTTGACCCTGGAGGCTTTACATTGTCACCAAGAAATAGCTAAGACAATAATTGAGACTTGATTTCTTGGATCTTATCCTCATAAATCTTGAGAAATTACCAGCAATCACTTTCTTTCAGGATGTGCTGCTTCTTCCTCAGTGACAATACCCATATTATTAATCATAGAAATCATTTGATATAACCGTCCTAAATCTCGTTGATTAAAATGTAAAACCAATCGAGGTAAATCAAAGGTTTCATCCTGTGCTTCTGCTGGTAAGGCTTGAGATTTATAAATTGTACCACTGACCAAAATATCACTAAAAGAATCATTTAATTCTACTACCTGATCATCAGATAAATCTTCTCGTAAACGAATTACTAATTGATTACCCACATAACGACTAGAATGATAAACCCGATAAAAGTTTCTGATCACATCATAAGCAACTTGTAAATTATTAGTCACCGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTCTCTATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 61355-63395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPV010000011.1 Anabaena sp. FACHB-1237 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================================================================================================================== ================== 61355 23 100.0 52 ....................... GCTCTAAAGGGTTTAAATAAGTGTATGAGTCGCCGTCCGTTTCTATTTACCT 61430 23 100.0 49 ....................... GAGTAAAATCCCTTACAGCCCTTTCTAACATAAATGTTTCTATTTACCT 61502 23 100.0 49 ....................... CTATGACAAGTATGAGTGAAGCATGGGGAATGAGAGTTTCTATTTACCT 61574 23 100.0 48 ....................... ATACTTTCGAGAAGGAGGAGCGTATGTCATACTTGTTTCTATTTACCT 61645 23 100.0 50 ....................... TAATAAAAAGCATAAATATAATCCCGTAACTTCTTTGTTTCTATTTACCT 61718 23 100.0 49 ....................... AAACTTGTTCGAGGGGTTGCAATTCTCGGAGAGAAGTTTCTATTTACCT 61790 23 100.0 60 ....................... ACATAAAAAATCCCCTCACTGGATGGTGTTGGTAGCACCAAGTCCAGTTTCTATTTACCT 61873 23 100.0 49 ....................... ACGCCATATTTAGCGGCTTCGTATTCTATAGTCTTGTTTCTATTTACCT 61945 23 100.0 57 ....................... TAAGAATTATCAAAATAAGCTAAGAAAGAATTTATTCTGGAAAGTTTCTATTTACCT 62025 23 100.0 50 ....................... ACGATTTATATGATTCTACTTCTTTCTGTAGTTCTGGTTTCTATTTACCT 62098 23 100.0 49 ....................... AAAACAACGGTTACAGCCATATTACAGCAGAATTGGTTTCTATTTACCT 62170 23 100.0 51 ....................... AGTCTATAAGGGAGTTAAGGGAATTAAATCTCCCTTTGTTTCTATTTACCT 62244 23 100.0 51 ....................... TTAGGATAAAGTTTCTGAATCTTTAACATCTTTAAAAGTTTCTATTTACCT 62318 23 100.0 51 ....................... ACCCTGTTTTAGCAGTCATAGATTCTCTTACAGTTTGGTTTCTATTTACCT 62392 23 100.0 49 ....................... TCTGCCACTCAGCAAACTTCTTTATGATTCTAATCGTTTCTATTTACCT 62464 23 100.0 48 ....................... ATCAGATGGGCCTAGGACTTAAACCAAGGGACTTGTTTCTATTTACCT 62535 23 100.0 51 ....................... ATCTCTTTTGCTTCCTGCAGGGCTTCAGCAGCTTCAGGTTTCTATTTACCT 62609 23 100.0 50 ....................... ATGGAATATACGGAGTGTCTAACTATGGAAAGTTAGGTTTCTATTTACCT 62682 23 100.0 55 ....................... ATCCCAGCACTTCGCCGGTTTCCTCTCCCAAACCTAGAGAGGTTTCTATTTACCT 62760 23 100.0 51 ....................... TGCCCATCCGTAGAAGGACAACTTACCATCTTTGTTTGTTTCTATTTACCT 62834 23 100.0 50 ....................... ATTTTAACCTTACTTTTTCTGCTCATAGTCTTCCAAGTTTCTATTTACCT 62907 23 100.0 51 ....................... CCAGCTGCAATCTGAAGTTTTTCATCATTATTTAATGGTTTCTATTTACCT 62981 23 100.0 50 ....................... AAGCAGTTCCCAAAAATGTTTGTCATCTACTCTTTGGTTTCTATTTACCT 63054 23 100.0 49 ....................... CGGGAAGACCAGAGATCAATTACCCCAAAGGGATTGTTTCTATTTACCT 63126 23 100.0 49 ....................... CCAACTATATACTTCATTATCTTGGATAACAAAGTGTTTCTATTTACCT 63198 23 91.3 152 .............AC........ ATTGATAGCTAAGAACGATTTTCCAGGTTTAATTTTGTTTGTAAGCTGTTGTGCCTTTAACTTGAATAATTAATACAAGCAAGATGCTTGTGCTACTGTAACTTCAGGTTTTTTAATTATACAGTGGGTGCTGCACATTAGCTTAATTACTT 63373 23 78.3 0 ........C....A..GCA.... | ========== ====== ====== ====== ======================= ======================================================================================================================================================== ================== 27 23 98.9 55 AATCCCCGTAAGGGGACTGAAAC # Left flank : TAAATTAATATATAGTATTGTAAATATTCGTAAATTCTTGACAAGACTAGTTAAATTGTGCTTGATTGATAATGGTTTATAATTTACTCAAATAATTTGCATTAGGTTTAAATATTTCTAGTCAACAATTTGCTAATTTACAAAGTAAAATGGAGAGGTTGATTGAGCCTGATGAGGATTCTATTAGAATTTATGTACTATATTTTGGTAGTTTCCAAAAAATTATGATTTATAGTTCAAATGTACCTAGACAAAAGTAAGCTACTACTATATAATCAATACATCAGCTTAATTTTTTGGCGGACCTGGAGCGAGGTCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTGAATAATTCTAGCGTTTTATTAGTTTCAGTTGGCGCTTAACCCTAAGCCTGAAATGAGGTTTTTTTTGAGGTCCGCCAAATTCCCCCCTACAGTCCCTTCGTAGACTGTGTTTCAGAGGGCGGGGTTTCTATTTACCT # Right flank : CCAAGACTAGAAAATCCGTAACTCCTTAAAGAAATCACGGATGTTATTAGTGCGGAGTGCAGGGTGTAAATGTTTCTCCTGACTACTGATCTAATTACCAATGCGACAACTGTTGATGGTAATAATTGACTATCTGGGCAATAACTTCTGATATAGTTAAACCATCAGTAGGCATTTCTATAGCATCCACCGCTTTTTGCAAAGGTGAAATTTTCCGGGTACTATCCTTATAATCTCTTTCCGCTATGTCTCTTTCCAGAATTTCTAAACTAACTTCCGGTTGGCCTTGTTGTTTAAAGTCTTGTTGACGACGACGCGCTCTTTCTCCTACCGATGCAGTTAAAAAGATTTTAATTTCCGCATCAGGGAAAACATGAGTACCAATATCTCTACCTTCTGCTACTAAACCTCCCTTTTTACCCCAGTTTTTTTGTTGTTCCACTAAGGCTTGACGTACTGCGCTTTGAGCAGCGATCGCTGATACTTGAGATGTTACAGCC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.69, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6423-6610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPV010000030.1 Anabaena sp. FACHB-1237 contig30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================== ================== 6423 32 100.0 41 ................................ TTAGTTTTTTAAAGCCTTGGAATCAGTTCTTTAAAGGTAAC 6496 32 100.0 51 ................................ GAAAGGAAAGGAATCTTTCTGTCTGATCAGCGATCGCTCAAAAGGAGTAAC 6579 32 96.9 0 ...............................A | ========== ====== ====== ====== ================================ =================================================== ================== 3 32 99.0 46 AACAACCCTCCTAGTACCGGGTGGGTTGAAAG # Left flank : CTTTCTGTGCTTATCATCTCCGCCTAGCCAAACATAGTTGACAAATATATACCGAACCTTGAAAATAGAATAATAAATATAATAGCGCCGCAATTCATACTCCTTTGAGTCTCTGAATTGTGAAAAATATGGGTTAGTTTGACTGTAGCAATATAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTGTCTTCGGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACCGAATCACCTCCGACCAAGGAGGAACCCTCCTCAATTCTTCATTTGAAGAACTAAAATCAAGGCAAAATTTCTCAGAGATCCGCGCAAGTGTCGAAACTCTTGACCTGTCTAAATTTCATCGGTTTTAAATCAGATATGATTTTTGTGACTGAGGCTCAAATAGGAAATTTGAAGACATCCGCGCTAACGACATCTGGAAACGTTGCCCCACAATACTTTGAAACTGGGTGGGTAACA # Right flank : AATCACGTATGGTAGACACAATAAAAGTCTAATTGACGGTAAGACTTGTGCGAGGGTTGAAAGATAGGAGTTCGATTCTCATAACATCTATAAATGTTATGAAAAAATTAACATTAGGCAAGCTAGATGTAAGACTATAATAATAGTCAAGAAGTGAGTAAATACGATGACAACAATTTGTCACTGGCTTTCTAAATACATTCTTTTTCTCTAGTGACAGCAATTTGTCACCAACGACAGCAGATTGTCACTGATGACAGATAATTAGTCACTGTACAACATTCATTGTTACCAGATATCTACTAGTTTATGGGCAGGAGGAGAATCGAACTCCTATGACCGCAAGGTCGCCGCATTTTGAGTGCGGTGCGTCTACCAGTTTCGCCACCCGCCCTTGAATGGCATTTTATTATGGTAACTTACTTTTTCCAATTTGTCAATACCTAGAAAAACTTTTTTGCCCAAGTTGAAAATGCCATCAACAAAATACCAGATTATGA # Questionable array : NO Score: 5.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.29, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACAACCCTCCTAGTACCGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 134693-137654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPV010000005.1 Anabaena sp. FACHB-1237 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================== ================== 134693 23 100.0 57 ....................... ACGGGCGTACCGGAATTGAACAGGAATCTGACAACTCGCCAAGGTTTCTAAACCAAT 134773 23 100.0 53 ....................... TAAGTTCACCAGTTCTCGTGTTGATGGCGATGAACTCCTGTTTCTAAACCAAT 134849 23 100.0 49 ....................... AATCTTTTCCCATCTATTTTAAAATTGGGTTGGATGTTTCTAAACCAAT 134921 23 100.0 52 ....................... ATTGTTAGTTCATATCTCATCGTGTCATCTAAATCAAAGTTTCTAAACCAAT 134996 23 100.0 56 ....................... GTTGCCTTAACCACCCAAGGGTGGGTAGAAAGCTGACCATAAGTTTCTAAACCAAT 135075 23 100.0 51 ....................... ACATTAAATATTTACTCCTAGGTTCTGAGATAGTTGTGTTTCTAAACCAAT 135149 23 100.0 50 ....................... CCAACACCAGTAACAGCATCACCACTAATAAAAATTGTTTCTAAACCAAT 135222 23 100.0 50 ....................... CATCTTCCTCTTCTACGGCGACATAGCCGCCTATTTGTTTCTAAACCAAT 135295 23 100.0 48 ....................... TAGCTTCTTTCAGGTCCTCTTCTGTTGGTACATAGTTTCTAAACCAAT 135366 23 100.0 49 ....................... CAGCCTCAAGACTTTCAACCACTTCGTTAATTAGCGTTTCTAAACCAAT 135438 23 100.0 53 ....................... AAACTTTTTGTCGTGGTATTCCCTATCCGTCATGGTTGAGTTTCTAAACCAAT 135514 23 100.0 55 ....................... ACGCAATCAAAGGATAGTTCTCCTCCACTGATCCTGTCAAGGTTTCTAAACCAAT 135592 23 100.0 53 ....................... ACAACCCTAGCCGCGTCCACAGATTACATTCTCTATAGAGTTTCTAAACCAAT 135668 23 100.0 50 ....................... ACGGAAAATTTTTTGCTCATTGCTGACATATATATTGTTTCTAAACCAAT 135741 23 100.0 49 ....................... CGATACGTCCCCGCTAGACATCATGAGAATCATCAGTTTCTAAACCAAT 135813 23 100.0 49 ....................... TAGCAAGGATCCTAGCAATTCTGCTAATCCTAAAAGTTTCTAAACCAAT 135885 23 100.0 51 ....................... AAGCGAGTATAATTTGTGACTTACTTCATTCTCAAGGGTTTCTAAACCAAT 135959 23 100.0 52 ....................... CATAATTCTCTGACTTGACTAATTTTCAAATTACGCTGGTTTCTAAACCAAT 136034 23 100.0 53 ....................... AACCAAAGACTGCTGTCAGTGGAATCAAGGACACTACAGGTTTCTAAACCAAT 136110 23 100.0 50 ....................... TTAGATTTCCTTCAGCATCACGATATGCCTTACCACGTTTCTAAACCAAT 136183 23 100.0 54 ....................... TTATATATTTTATCACACTCTGCAACTTTTAATTTTCTTGGTTTCTAAACCAAT 136260 23 100.0 56 ....................... AGCTCTTTCTCTATATCAAGCTTTAACCACAGCTCTGTGTTGGTTTCTAAACCAAT 136339 23 100.0 51 ....................... GCTATTTGCTCATCAGTCAATAATTCTGGAATTTCTGGTTTCTAAACCAAT 136413 23 100.0 54 ....................... GATGCATAGTCAATTCCCTCGAACATTAAATCCTGCAATCGTTTCTAAACCAAT 136490 23 100.0 49 ....................... GGAATTGCTCCATACTACTTATAAAACTGTTCCATGTTTCTAAACCAAT 136562 23 100.0 56 ....................... TGGAGCAATTCCCACTGCTTTATATGCAAAAATTTGATGCTGGTTTCTAAACCAAT 136641 23 100.0 49 ....................... ACATCACTTGTTTTAGGGGTAATATTTACCCCTATGTTTCTAAACCAAT 136713 23 100.0 55 ....................... TTTTCATGATTTTCTTAAATAAGTTTATAATTATATTAACAGTTTCTAAACCAAT 136791 23 100.0 49 ....................... CTATTACTTTGTACTTCATTTTCATAATCCCTCTAGTTTCTAAACCAAT 136863 23 100.0 57 ....................... AAATTCGTTCACCCTATTCTGGAGAGACAATTGTGTATCGGGGGTTTCTAAACCAAT 136943 23 100.0 55 ....................... AAGGAACTCAGAAATGAAGCGATAGCAATGATGCGACTAACGTTTCTAAACCAAT 137021 23 100.0 50 ....................... TCATCTCGCACTACCGTTTTCTTAATTTCTTTCAAGGTTTCTAAACCAAT 137094 23 100.0 56 ....................... GTTAGAGAGACCGATGAACTGACTGTGCAAACAGCCAGTCAGGTTTCTAAACCAAT 137173 23 100.0 53 ....................... CTGCGGTAGGTGGTTTAATGCCTGCCAATTCAGAGTTTCGTTTCTAAACCAAT 137249 23 100.0 56 ....................... ATTGAGCGTACATTTGCGCCTCTGGCTGATTAGCAAATCTAGGTTTCTAAACCAAT 137328 23 100.0 58 ....................... TATACTTATTTTTTCTGTTTAATCCAATTTGATATAAGTTCACGGTTTCTAAACCAAT 137409 23 100.0 50 ....................... AGAACAAACCCTCCAGGCTGTCTAGCGTTATTAATAGTTTCTAAACCAAT 137482 23 100.0 53 ....................... TTTTCCGAATGTTAGATTTGTCATTGTTTTTTTTTCCTTGTTTCTAAACCAAT 137558 23 100.0 51 ....................... CTATCCAGCAAGCAAAAGAGGTAAAAAGGAATCAATCGTTTCTAAACCAAT 137632 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================================== ================== 40 23 100.0 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : TCATAATTTACGACTTACCAGATAGTAAACCCGCCAATAAAAGACGAACTCGTTTACATAAAATGTTGAGCGGCTACGGAAAATGGACTCAATATAGTGTGTTTGAATGTTTTTTAACTACTGTACAATTTGCTCAGTTACAGACTAAAATGGAGAAGTTGATTAAAGCTGATGAAGATTCTATTAGGATTTATGTACTAGATGCTGGTAGTGTGAAAAAAACTATCACTTATGGTTCCGAAACCCCTAGACAAGAACAAGTGATCATTATATAATTACTACATCAGCTTAATTTTTTGGCGGACCTGGAGCGAGGTCAAAAACCCTGGGGGGTCCGCCAAATCTCCAGAACCTTGATAATTGAATAGTTTTAGCGTTTTTTTAGTTTCAGTTGGAACTTACTCTAAAGCCTGAAATGAGGTTTTTTGAGAGGTCCGCCAAATTCCCCCCTACAGTCTGCTCCCAGACTATGTTTCAGAGGTCGGGGTTTCTAAACCAAT # Right flank : CATAAATTATCTAACTCAGACGATCAAGACATCTACTTAGGTGCTATAAAAATATGAATCCCTGTTTTGGGTTGACACTTATAAGAAAATATTTTAAATTTATGATTATTAGGTTTGACATAAGAATTGTCTACATTATGAATAAACACAAGTGCTTTTTAGGGTTAGCTATATTAGCTACTTTAGTCACGACTCCTGCTCAAGCTGAGGAAGTTTCTAGCAAGGCATCCGATTTAATGGTTCAAAGTTATAGTTTGAATGATTCATTAGATCAAAACACTAATAACAATCAACCAATTAATACCCCAGGATCGATATATAACAGTAGTGATATTGATTCTAAACCGTCTGCAAGTAATTACTGGTATGTAAGCAGAAGTGTTGGTAGTGCTTCTCCGGGTATAGAAAAAAATACTGCTTTTATTGCTGAGAATAGAACTAATAGAACTATATCTCAGGATCAAATAAAAGTAGTACAAGGAATAGGATACAGAGTCATT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17336-14468 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPV010000053.1 Anabaena sp. FACHB-1237 contig53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 17335 36 100.0 36 .................................... TTCTTTTTAGTTAAAGATATACATAAGATTTGATTT 17263 36 100.0 42 .................................... ATCGCGGATAGCCCTAATTCACCTGCCAGACTTAATACTATA 17185 36 100.0 36 .................................... TAAGTTTGATGGTAAGTGCCGCGTTATACGTCTTGA 17113 36 100.0 43 .................................... GTTTTTACGTGAGATTCTTTCAATCATGGTAAAACTTTTTAAT 17034 36 100.0 41 .................................... CTTAACGGTAAAAATCCCCTTACCAGATGGAAGGGGAACAA 16957 36 100.0 37 .................................... TCAACCCAACCTTGAAGGGTGGCATTTCTGCAATCCT 16884 36 100.0 42 .................................... TGGTCTTGGTATTGGGCAATAGAAGAAGCAATATTTCCAACA 16806 36 100.0 37 .................................... TAAACATAATCGTCTTCCAAATCTTCGTCTGGCATAA 16733 36 100.0 37 .................................... ATGGCTTTACCTTCCTTGCGAGACCCACTAGCTCCTA 16660 36 100.0 36 .................................... AGTAAAGGAAAAGAGAATGAAGGAGGGGAAGACCAA 16588 36 100.0 36 .................................... CAACGTATTGCATGGGCAGGGCTGAATTAACTTGTT 16516 36 100.0 36 .................................... GAGTAAATGCGGATTCAATTTGCTTTAACGAGAAGT 16444 36 100.0 37 .................................... AAATTTCCTCCTATGTATTCATCTACCTCAATCCCTA 16371 36 100.0 35 .................................... TCAGCTTTATCCTTAATAGAGATTTTATCAAGGAT 16300 36 100.0 44 .................................... TGGATTATTTCCTCTTTCAAGGAGAAACAGAGAGAGGGAGACAA 16220 36 100.0 35 .................................... CTCCCCATCTGGTAGTCCGGGGATGCAAACGTGAT 16149 36 100.0 36 .................................... TCAAAACTTTCATCACAATAAAGTTTGGCAGAGTGT 16077 36 100.0 37 .................................... TCTGGTCAATAATGATTGCTTTGCATATCTTGTAATA 16004 36 100.0 37 .................................... ATTGTTCTTTACAGTAGGAAGATTAAGACCACAATCA 15931 36 100.0 43 .................................... TACCTTGACGGCTTCAATCATAGGAATGTTACGTTCAGCCCAA 15852 36 100.0 43 .................................... GAGAATGTTCCCAAACAATTTCCCCTTGATTGTTTTCAACCCA 15773 36 100.0 41 .................................... TAGCGACTTCATGATTGCTTAGAAGTCTGAAATCCTTACTC 15696 36 100.0 36 .................................... TTTTTTCACTCTGGCATCAAACCCGGACTGGGATTG 15624 36 100.0 36 .................................... ACCTCAAAAGACACGCACTCAATAAGTCGGTCTGAG 15552 36 100.0 41 .................................... TAAGAAGCTTCATGAGTACAAGGAAGTAATTCACAGACAGT 15475 36 100.0 35 .................................... TGGAGAGAGATGGGGGCTACTGCTACAACGATGCT 15404 36 100.0 36 .................................... TGCATTTGTCTGAGTGCACTTTTCGTCTGGGAGACG 15332 36 100.0 41 .................................... TGGTTTACTAAACCCGTAAGGAGTAAAAAAAAAGAGGGGCG 15255 36 100.0 42 .................................... TTGCTTCATGGCGATTAAGCCAATTGCCACCAAATTTCTCTA 15177 36 100.0 43 .................................... GCAGGTGTTTGAGGATAATAGATGAAGCTATACAATGCGTACA 15098 36 100.0 44 .................................... ATTTATCAATTTGAACTAGTTCTGCACTAGTTGCACCAATACCA 15018 36 100.0 36 .................................... TTAATGGCAAGCTAATAGCATTAATACTTGCTTTTA 14946 36 100.0 38 .................................... ATAGTCTGCATCTTCAGGATAAAGAGGTTCATCTAATT 14872 36 100.0 35 .................................... TGTACTGTTTTGACGGCTCTTTTTATGTTCATAAC 14801 36 100.0 42 .................................... AAAAGGTGCACTATCTGTTTGCCAAGTGCCACGCTCGTTCTG 14723 36 100.0 41 .................................... CTAGAGCCTGGGAGGCTGCTTGCGTGTTTACTTTGTTTCCA 14646 36 100.0 38 .................................... TGAGTATCTTGAGACTCTGCCGACTGCCAGATGTTATA 14572 36 100.0 33 .................................... TTAAACACCACCTCACCTGACTCTGTGGTTTCA 14503 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 39 36 100.0 39 ATTCCTAATTCGTAGGGATATTATTTGATTGGAAAC # Left flank : AACATACCGAATTGATTGATTATTTTCCATATTTGTGTTATGTTTTTGTATGTAGTTTCCTATGATATTCCTGATGATAAACGCCGCAAAAAAATAGCTGATTTATTGGAAGGTTATGGTCAGCGTGTACAATATTCTGTGTTTGAATGTCAGTTAAGCACAGAAAAATACAATGATTTACGTAGGAGGTTAAGGAAACTTTTGAAGTTGGAGGAAGACAATATCAGATTTTATCCTTTGTCTAAACATACTCTTTCTCAAGTTGAAACCTGGGGTGTGGGAATACCTGTAATTCAACCACCGACTTCAATTATTGTTTAGCAGAAGTTCAATGAAAAAATACTCATAGGCTGATTTTATGGTTTTAAGGCTCGGTTGCTTGCAAAATAAGGATTACAGGGTTTTTCAAAAAAACTTCTCTGGACTTTTAGCCATGTATTTTTGTGACCTTCGGAAACTGTCTCTGGACTTCTTGCTCTATATGGGTTATAATTTGGGGG # Right flank : AGCTTTTCACTCTGGTGTTTTTATCTTTTCTATCATATTTATTTTGTGTAAAGCAAGCACAGCATTAATAAAGGGTTTTGGCTTTCAATGACTACTACGAAAAAAGTTATTTTCTAAATTTTAAATTATTAAAAAATAATCCACAAAACTCTTGCAATTCAACACTTAATAAGCTAAGATGCAAAAAGTGAGAAACAAGAGAAAACAAGAAAATGACAAAACAAGTGATTGACAAGATCAAAGCTATTTCAATCCATGCTCCTCATGCCTATGCTATCTGTATGGGCAAAAAGCCTTATGAGTACAGAAACAGACCAACAAAAAAAAGAAGCTGGGTTTTAATCCATGCCAGTCTATCTAAGGCAAGTGACTTTTGTTTTGAGGAATATAACATTGATCCTAAAATCGCTTGTAGACAGGCTATCATAGGTGCATCATACATAACTGACTGCATAACTGATGAAAATTGATAATTAAACAGCACTGATTAGCTGACAGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTAATTCGTAGGGATATTATTTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 13941-14933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPV010000067.1 Anabaena sp. FACHB-1237 contig67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 13941 37 100.0 39 ..................................... TAGGAAGTCAAGGATAGCTATACCTTGTTCTAGCTGTAC 14017 37 100.0 35 ..................................... TTAACAACAGGTAAGGCAGGACGTATTTTAACAGC 14089 37 100.0 36 ..................................... TCTAGCTTCTCATCATACCCTTCCGCTACTCTTGTG 14162 37 100.0 37 ..................................... AAGTTCAAGCTTTTGGTAAAGGTAGATGCAGCAACAG 14236 37 100.0 37 ..................................... CTCTCTCGTACCACCACACCATTAACTTGCTTAGAAA 14310 37 100.0 41 ..................................... TTCGACCGGGCGGCGTACTGGTTTAATTACGTTGTATTCTC 14388 37 100.0 33 ..................................... CAAGTAACTTTCGCTGCTTGTACTTTAGCGATT 14458 37 100.0 37 ..................................... TCTGTGAGGCTTGCGCCCCAGTTTGTTAGCCTCCACC 14532 37 100.0 37 ..................................... CACACACTCAATAAGTCGGTCTGAGTCGGGGTCAATA 14606 37 100.0 34 ..................................... TGCTTTAAAGGAATATTTGAAATGAAGGCTGTAC 14677 37 100.0 36 ..................................... TTTAATTGATACCGGGTAGCCTCTATTTGATTCTTG 14750 37 100.0 37 ..................................... TGCTGTTATCATTTAGACCTCAACGAACCGTTCGTTT 14824 36 97.3 37 .................-................... GCCATAAATTCACTACTCTTGATTTGAAAACCAAGAG 14897 37 91.9 0 .................A...AT.............. | ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 99.2 37 GTTTTTGATCACCTTTTCCCCGCAAGGGGATGGAAAC # Left flank : ATCACCGGATGATTATAAGAATATAGCTACTAAAGGGGCTTATCATTTAATTCGTGTTCCTTTAAAGGTTGTGAAAAAACCTAAGTCGGATATTTCTGATAGTAGTCAGGAGTTAGAATTACCCGCTATCTTTTGATTTTCATTGATGGAAATTGTTGACTTTTGTAAAGTTGGTTATGGGAGTTTATGAGACATGAAAGAGGTGCAATTTCTTTCTGTGTGGGCTTTTTGTTGTTGTAACGGAATGTAAATTAATCTGTTAAGTTCCGCGCTGTCAGCTATTCTGGTTTATTTTTAGTGATCTGGAAAATTTTTGAGAAAATTTTGGTTTTTGGGGTTGACTTCTTGGAGTTTTTGTTTTATATTATGTTTATTGGCTGAAAACGGCTCACAGAACCTTGAAAATTGAATACTTATTAAAAATGTCACTTTGATGTTTCCGTAGCTCGGTGCAAAAGCACTCTGAAAGCCAGTTGTGATAGCAGGTCAGTAGGTATAGG # Right flank : AAAGCAGTTATAAAACCCACATTCCGCACCCTCAACTGTCACAGATCAAAAAAGCCATTGAAGTAGTACATAATAACTAAAGGTCACTCAAAAATTAAGAGGCTTAATGAGAATAAATAGCATTAAAAATGAGAGGAAAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGATCACCTTTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 30556-32725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPV010000008.1 Anabaena sp. FACHB-1237 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 30556 37 100.0 41 ..................................... TCAGTTTCCTTCCACTTCCTTCAAAGAATATCGGATAAGTG 30634 37 100.0 35 ..................................... TTCACTTCTACCTCCGCTTTGTACGTCTTGATATA 30706 37 100.0 37 ..................................... AAACTCCAGATGATTACTGGAGAGGTTTGGAATAAAT 30780 37 100.0 37 ..................................... CTCTATAAATTCCTCAAAAAACTCCTCAAATCCATCA 30854 37 100.0 33 ..................................... TTCATAATATTTCCTTATATTACATTAAAAGGT 30924 37 100.0 35 ..................................... CTGGAAAGAGAATATTTCTGGTGTTGTCCCTGATG 30996 37 100.0 36 ..................................... AAACTTGGTATCCTCAAAATTGTAAGGCATAGATTT 31069 37 100.0 40 ..................................... TGTACAATAGCTCCATTACCATTGACCTTTTCCTTACGGA 31146 37 100.0 38 ..................................... TACTCAGGCAAACTTTGATGGATATCAGAGTGCCATAA 31221 37 100.0 42 ..................................... AAATAAGAATGCCACTCTTGCCACCGCGTCAGCGCGCTGGCG 31300 37 100.0 34 ..................................... GTGATTTTTACTATTGCTTTCCTTAAAGGATCAT 31371 37 100.0 35 ..................................... AAGGTGCGGGTAAAACCTACACATCAGCCGCAGTA 31443 37 100.0 33 ..................................... TTCCCTCCCTGGCCACCATATAACCGCAATCTC 31513 37 100.0 36 ..................................... ATAACTAGCTAATGTATTTAAGACAAGCCAGGCATG 31586 37 100.0 33 ..................................... TAAGGAGTTTCTTTGGTGAAGACTGGGACGGAA 31656 37 100.0 33 ..................................... TTTTGTCTTGTGGACTGCTATAAACTACACCAT 31726 37 100.0 37 ..................................... TGCGCACTTCAAATTTCTCTAAATTTCCTGCGAAGCT 31800 37 100.0 34 ..................................... AATGAAGGTGTTTGATAAGTATTTAGAATTTGAA 31871 37 100.0 35 ..................................... ATCTTGTAGCTATAGAACCAATCAATCAAAGATTA 31943 37 100.0 36 ..................................... AGTGGCCGCCTTCACCTTTGACTTTACCCCACCAAA 32016 37 100.0 39 ..................................... TATCTTCTAACTTCCAATTGTAAAAATCAGGAATTTTTC 32092 37 100.0 41 ..................................... GAGGTAGAATCGGTTGTAACAGAAGAAGAGGCTCAAGATGT 32170 37 100.0 34 ..................................... AATAGCCCCAACAATTGAAGGTACTTACACAGAA 32241 37 100.0 42 ..................................... GTGATATAGCCGCAATCTCTAACGATCTTAGCTAGGGGATTG 32320 37 100.0 42 ..................................... CTGATTCTGATTGTGGTGGTGTTGGTTCTGGTTTAGTTTCAG 32399 37 100.0 35 ..................................... TTTTTGTTAATAGCTAAATCCTTAGAGTCGGAGGC 32471 37 100.0 37 ..................................... ATAGGATTGGACTGAGAGTAAAAAGTATTCCAGACTT 32545 37 100.0 36 ..................................... CGATCCTGTATCCACCACTTTGTGTTTTTTCTAGCC 32618 37 100.0 34 ..................................... ATCGTAACGAATTACAAACTGAGTTTCTGAATAT 32689 37 94.6 0 ..................A....A............. | ========== ====== ====== ====== ===================================== ========================================== ================== 30 37 99.8 37 GTTAAAACGCGCCTTAATCCCTATTAGGGATTGAAAC # Left flank : GTAACACAGGCATACTTCGACAAGCTCAGTACAAGTCTTGCCGTGTTCACGGTGTACCTCATGTAGATGGAATGTGCTGTAAATCATGTAAATAACTAAATTGTTCATATCTGACGCACCCTACAACAGATTTTTTAGTGTGACACTTGCGTAAGTCCTATAAGCTAATAAACAAGGATATGTAATAGTATCCGCTTTTATTAACTTTTTGCTTTCTGTTACGCTAAGATGCTAACAATCAGTCCTAAGATTCAGATCATTTTCTTGGCTGGATGCGCGGATGGGGGGGTGTAAAAATTTCCCGTGAACAAAAAATGTCTGGAATCTTGTCTACATCAGCTTTTGATGGATTTTATCAAAGTTACCCACCCGCGCACCTTACACTGTAACCTTTTCAGTCATTTTCCCTCTTGACATAATTCCTGAAATCAACTATGATTATTACATTCGCGCAACCGAACCTTGAAAACTAAATATACCAAGGCTTTCAGAACCCCGCA # Right flank : CTGTATCGTCCTGATAAATGAAAAATGATGAGAAAATAAGATTGTTGAGCTATTTGTATATACTTTTAGATATTATGAATATGCTCACAGTTATGAAATTTACTAATTTAATTAGGAAATGAAATTATGGTAAAAGTTAGTAGCAGTATTGAAGTGCAGAGTGCAGAGTACAAAGTAAAAATTCTATCTCCTGACTTCTTGATATCCTGACTCCCACTATAAAATGTTTAATCAACAGCCTCAATATTTTCCCATTCACATCTTCAGGTAAATATGCTTAATAAAGATTTAAGAAAATTTCTCACTCATTCAAGTATAGCTATGGTTGTATTAACTAGCGTTAATACCATGTTACCCTCTATAAGTTTAGCCCAAACACAAACAAATATATCCAGTAACATACTCACTACAGACTACCTACTAGGAGGAGGAGACCTTATTCGTGTCAATGTATTTGAAGTTCCCGAATATACAGGAGAATATCAAATTCCTCCTGGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAACGCGCCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA //