Array 1 440207-441698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELUT010000002.1 Salmonella enterica subsp. enterica serovar Havana strain F40 NODE_2_length_469609_cov_32.645541, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440207 29 100.0 32 ............................. CTGTCCTTTTTCATGTTGATGACGTCGCCCTC 440268 29 100.0 32 ............................. TTGTTACGAGGCGTCGAAACCTCTTACAAGCG 440329 29 96.6 32 ............................A GCAGCGCACCACGCAGCAGGAAAGTTAATCCC 440390 29 100.0 32 ............................. GATCGTGTTTTTTTAGCAGCGTCATCGCGCCA 440451 29 100.0 32 ............................. CTGTCAAACTGGATCCCCCTCATCATCATTGC 440512 29 100.0 32 ............................. GCACATCTGAATATTTTACAATAAATTCACCA 440573 29 100.0 32 ............................. AAAATTATTATTTTTGCAACTGCAATTCTGCT 440634 29 100.0 32 ............................. ATTGCTGTTTATTCGCGGCTGATTGCGCCGTG 440695 29 100.0 32 ............................. GAACAGGCCCAGGCTGCGCAGCAGCAACAGAT 440756 29 100.0 32 ............................. CTGTAGGGGCGCTGGTGGCCGCTGCGGTGGTT 440817 29 100.0 32 ............................. AAATCACAAAGCGCCCAGGGGGAGCAAATAAC 440878 29 100.0 32 ............................. CCTCCTTACTGACGCTGTGTGCCTCCTCTATC 440939 29 100.0 32 ............................. TTTTTTCAGAGGTTCGCGCCGGGATGCGCAAT 441000 29 100.0 32 ............................. TTGTCGTTAGCCCCCCAACTTATATTAATGGA 441061 29 100.0 32 ............................. CATTATGGTAAAAATAAATTTTTCCAAATAGA 441122 29 100.0 32 ............................. AGTACGAGGCACTATTCGGCAAGAAACCGCAC 441183 29 100.0 32 ............................. GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 441244 29 100.0 32 ............................. GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 441305 29 100.0 32 ............................. CGCCATAAACGCGACTCCGTCACACATCCGTA 441366 29 100.0 32 ............................. ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 441427 29 96.6 32 ...........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 441488 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 441549 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 441610 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 441671 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 457958-459392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELUT010000002.1 Salmonella enterica subsp. enterica serovar Havana strain F40 NODE_2_length_469609_cov_32.645541, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 457958 29 100.0 32 ............................. ACATTCTGGTCTACGTTATCCAGTTCGCCAGC 458019 29 100.0 32 ............................. ACGAGTTTCTGGCCCGCCTGCCCGGGTTGCAG 458080 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 458141 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 458202 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 458263 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 458324 29 100.0 32 ............................. GGACAAAGACAACGAGCGCATGGTGCATACGG 458385 29 100.0 32 ............................. AGGCTGGTGTAATTATCGCAGGGCATGGGCGG 458446 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 458508 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 458569 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 458630 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 458691 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 458752 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 458813 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 458874 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 458935 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 458996 29 100.0 32 ............................. CCTGGCACTCTAAAGCGGTGCGCCATACCCGG 459057 29 100.0 32 ............................. ATGTCTGGCAGATACTGAGTTTCCAGCTTGTT 459118 29 100.0 32 ............................. ATTGTTGCGCCACCAAAATTTTGAGCGCCACG 459179 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 459240 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 459302 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 459363 29 96.6 0 A............................ | A [459389] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGAACAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGTGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //