Array 1 91265-91563 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEAD01000013.1 Bacillus pumilus strain DE0342 NODE_13_length_118579_cov_44.539303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 91265 32 100.0 35 ................................ TGCAAGAGGCCTTTTCCTATTAAATATTGATGGAG 91332 32 93.8 35 ...........TG................... CTGTACCTGCATAGGCGTACCCTCTACCTTTAATA 91399 32 100.0 34 ................................ AAATCGCCATAGTTAGTTGCCACAATCATATTCG 91465 32 100.0 35 ................................ ACTTCAGTAGAATCAATGAAGCCATTAGTTGTAAC 91532 32 84.4 0 ...........T.........C.AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTACATCAAGCTCATCGAAAAAGTAGATTGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATCAAATTCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTCATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TGATTGTCCCTTAAACGGGTATGACCACCTCAAATCCAACTTCTTACAACACCCTCTTTCAAATACAAAAGCCATCAAAATAGACTGTTCATATGTATAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAATATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATATTATCCATTCGTAATGAATGATGAAGGAGGAAATGGTTTGGGTGAGACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAACCATGGCGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATCGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATG # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 99617-100056 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEAD01000013.1 Bacillus pumilus strain DE0342 NODE_13_length_118579_cov_44.539303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 99617 32 100.0 35 ................................ TCAAATTCCGCCATAAGTCACATCCCACCCCTCTA 99684 32 100.0 34 ................................ CCGATGCAGCCACGCCGACCATCCAATCGCCGTT 99750 32 100.0 34 ................................ TAAAATCACTTGCCTTTGAAGAAAATGTGATCAG 99816 32 96.9 44 ............A................... ATAAGCATTGGAATGAACTAAGAAAAATCGAAAAATCAGTCAAA 99892 32 93.8 33 T...........A................... ACCATCAAATTAATGAATTCAAAAAACTGTGAA 99957 32 93.8 35 ...........CA................... CTTGCTTGGATATGTCGGTTTAGTTGGTGTTTCAG 100024 32 84.4 0 ...........CA......GA......A.... | T [100053] ========== ====== ====== ====== ================================ ============================================ ================== 7 32 95.6 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : ATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATCGCTCCAATCTTCGTGCTTCTTGACGCGATCGACGTCGCACTCTACATGAGTGGGTGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGCGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAGAAATGAGAAAAAATGTATGTTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTATATGGGTGCGTGGATTGAAATGTGAACACCGTTAAATAAATAATAGTAAAAAGACAGTCGCACTCTATATGGGTGCGTGGATTGAAATCCTGCCACTTCCTCAAAAGTTCTCGTAATCATTGTCGCACTCTATATGGGTGCGTGGATTGAAATCAGAAGGGCTTTTTTTGCTTTCGAGGTCCATAGCGTCGCACTCT # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 100348-100642 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEAD01000013.1 Bacillus pumilus strain DE0342 NODE_13_length_118579_cov_44.539303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 100348 32 100.0 35 ................................ GTGAACACCGTTAAATAAATAATAGTAAAAAGACA 100415 32 100.0 33 ................................ CCTGCCACTTCCTCAAAAGTTCTCGTAATCATT 100480 32 100.0 34 ................................ CAGAAGGGCTTTTTTTGCTTTCGAGGTCCATAGC 100546 32 100.0 33 ................................ ATTGTTATGTACAAAACCTTTATCAAGAATGCT 100611 32 71.9 0 .A........CC...A....A.A...CAC... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 94.4 34 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : ATAAGCATTGGAATGAACTAAGAAAAATCGAAAAATCAGTCAAATTCGCACTCTATATGAGTGCGTGGATTGAAATACCATCAAATTAATGAATTCAAAAAACTGTGAAGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTGCTTGGATATGTCGGTTTAGTTGGTGTTTCAGGTCGCACTCTACATGAGTGGATGGATTAATAATTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAGAAATGAGAAAAAATGTATGTTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTTCTGCAAATTATATAAAGTCAAATACTTATCCATATCAAAATCTACACAAATGATTAATCAAAATAATGTACTTTCCCCTAAATCCAAGCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGTAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGATGATCCATGTCGATATGGCAGATCGCGACGAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAAGCTGAAATGTTTTCGTCTTGTTTGGCAATTTTCATAATTTCTGTGTCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAGGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATCGTAGGC # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //