Array 1 1161414-1161019 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWUS01000001.1 Bombella favorum strain TMW 2.1880 Bombella_sp_TMW21880_seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1161413 29 100.0 32 ............................. GGAAACTCATTTACCGTGGATACCTAACGAAT 1161352 29 100.0 32 ............................. GAGCGGCGGCGGGAAATGGCAACTGATGCTGC 1161291 29 100.0 32 ............................. TCATCAGGGAAATAACAGGGAAGTGGGGCTTT 1161230 29 100.0 32 ............................. CTCTCTTGGAGAGATGCATCGGCCATCGTGGG 1161169 29 100.0 32 ............................. GCACTCCCACACACGGCAGCCTCGCCGCTAAC 1161108 29 100.0 32 ............................. TCGCCCGACCGTCCGAAATCCACCCCGAAGAC 1161047 29 89.7 0 ......................GA..T.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 CTGTTCCCCGCCCATGCGGGGATGAACCG # Left flank : CTGGAGAGAATCATTCCGACCATTGAGCAGGTTCTTTCGGCTGGCGGCCTGCCTCGCCCCGAGCCCCCACCGGAGGCCGTGCCCGTCGCTTTTGAAGATGAAACCTTTGGCGATCCGGGGCACCGTTGATGCTGGTTGTGGTGGTCACCAATGCGCCACCTCGCCTGCGTGGCCGTCTGGCAGCATGGCTGGTGGAAATACGGGCTGGGGTCTATGTGGGCAGCTACTCCAGACGGACAAGGGAGATGATCTGGGAGCAGGTACTGCTTGGCCTTGGGCCTGAGGGTGATGCTGTCATGGTTTGGCATGTTCCCAACGATCAGGGATATGAGTTCCGTACGGCTGGTCACAATCGCCGGATGCCGGTTGATTTCGATGGATTGAAACTGGTTGCTTTTCGACCGGAATAAAGCGAAGGAGTGAGGTATTAAATTCTGGTTTAAGTTGGTACGGTCTTTGACAATAAAAAAAGTCATGTCTTACAGTACGTTGCAGGAAGT # Right flank : GGGCAGGTGATGCGGCGGCGGGGCCTGCAACGAACCCCGCAATGCGCCACGTGGCGGGTAGCCACAGCTACGGCCTGCAGATTATCACCGTGTCACGCCGCATCAGCGTCAATGGATGCGAAGAGGACAAAGAGACGTCAATAGGTACCTCTCATTGTTCTCCCTTACCACCGGTAAGACAGGTCACCATACAGAGCACGGCCGGGAGCGTAGGAGCAGTTTGTCGTGCTGGTACATACGGAAACATATTTCGAGTTGGTAATGTTGGTGCCGTTTAGCTGGAGGTGCCAACGCTGGTAATCAAGATGGGCTTCAATATCGCCAACCAACTGGGAAGGAACGATAATGGTGTTGGGTAAGGTGCCGGCTGTTGTGCTTGTATAGCGTAGGCCACCACCAATTCCGGCACTTAGGGAGTGTGTAAGGGCGAGACTGCGCCGCAAGAAAAAGGATGCCATGCGGGAGGGAACCGTTGTCGGGCGTTGACCGACCTGGTTTTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.00,-12.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 388484-388788 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWUS01000002.1 Bombella favorum strain TMW 2.1880 Bombella_sp_TMW21880_seq2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 388484 36 100.0 30 .................................... TCCCTAAAAGAAGAGCTTTTTTCTTATTAA 388550 36 100.0 30 .................................... TGGTTCGGCTCGATGGGCCGGAAAATCTGA 388616 36 100.0 37 .................................... TTCCACCGTCTGGCATACGCCCTGCACAAACAAATCA 388689 36 100.0 30 .................................... CTCGGGAACAGCACACCCTCATATTGGCAA 388755 34 80.6 0 ...................CC..-.CC.T...-... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 96.1 32 AGCCTACCATAGGCAAATCGGTAGGGAAACCACGGC # Left flank : ACCATGACCATTCTTGCAGCGACTGAAATTGTTGCCTCTAACCTGGTTAAAGCCCTTGAACATAACAGTGCTGCCTTACTGCGCCTGCCTGTCTGCATCGCTGGGGGTAGCTCATGAAAGCAGAGGAGACCCGATTCTTGTGGCTAATAATCTTTTTCGACCTCCCCGTCCGCACCAAAATTCAAAGACGGCAGGCAGCGCAGTTTCGTAATTTCCTACGTGATGATGGATTCATCATGCTACAATATTCCGTCTATGTTCGTGTCGGACGGGGACAAGACAGTCTCGATAAACATTTACGCCGGGTTCGGACCGCCCTCCCTAAAGAAGGAAGCGTCCGAGCTTTGCAAGTAACGGACAAACAGTATGGAAGGATGGAGATTATGCTCGGCCTTGCCAAAAAAACCGAAGGAATAGGCACGAAACAGATGGTGTTGCTATGATTTTCGATTGTAAAAACAATGAAAAATCATGCAACATCAATCTGTTTCGCAAGAGCT # Right flank : GATATTAATCCAAGCGATTTGGATTGATGTGTTTTTTTTGGGGTGTATATTTGGATGCGGGGGTAGGATTTGAACCTACGACCTTCAGGTTATGAGCCTGACGAGCTACCGGGCTGCTCCACCCCGCGGTAGTGGGTGGTATATATAGAGAGAGGGTGAGCGAGGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTACCATAGGCAAATCGGTAGGGAAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 78132-75235 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWUS01000003.1 Bombella favorum strain TMW 2.1880 Bombella_sp_TMW21880_seq3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78131 29 100.0 32 ............................. CGGATGCGCCCTATTAACGGCGTTAATGGCTG 78070 29 100.0 32 ............................. GGCGTGGATGGGGCGACCTCAACACTACAACC 78009 29 96.6 32 ............................T GCCGTGGGTTCTGGAGGATGCGGCATAGCGTG 77948 29 100.0 32 ............................. ACGAAACGGGCGAGACAGAGACGCCGCTAACT 77887 29 100.0 32 ............................. CGGCTGAACTCCACTAATGGAATTCGTGGACG 77826 29 100.0 32 ............................. CCAATATATCGGTTGATTTTTGTCTCTGGGAT 77765 29 100.0 32 ............................. GCCACTTGATTGATTCACGATCAAACGGAGCG 77704 29 100.0 32 ............................. GCTTGATCCGCAGGCAGGCAGAGGACAGGGAC 77643 29 100.0 32 ............................. TGGTCCCGATTCATCTTCATCCTGGCTGCTGG 77582 29 100.0 32 ............................. GCAGAGGAAGACCGCTACGATGCCAAAGAAGA 77521 29 100.0 32 ............................. GGTTTCGGGCCGGTGCGAACGGTCTGGCAGTA 77460 29 100.0 32 ............................. GCCAAGAGCGGATCAAAACCATTGAGGAAGCG 77399 29 100.0 32 ............................. ATGAAAACGACGCTCTAAACCCATGGGGAACA 77338 29 100.0 32 ............................. GCCGTTGCGCTGGGCCCCGTCATCCAGCAGGT 77277 29 100.0 32 ............................. GCGGCTCAAAAAAACCATCATCTGCCGACTTG 77216 29 100.0 32 ............................. GACGCCGGGGGATGGCCGGCGTCCACACAAAA 77155 29 100.0 32 ............................. GGTATCTGGATATTATACCGCCGACTAGCGTC 77094 29 100.0 32 ............................. CACGAGGGAGGGAGCAACGATGACTGACCATG 77033 29 100.0 32 ............................. AACAGGCCGCTCTTGCCGCAGAATTGCGGGCG 76972 29 100.0 32 ............................. GCGGCATTTTTGGGCTGCCTCGAGGGGAAAAT 76911 29 100.0 32 ............................. TGCCATGATGCTTTCCTTTACTTGCCTGCGGT 76850 29 100.0 32 ............................. GCCTACCTGCCTAGCGATGAGAAAACGCCCAT 76789 29 100.0 32 ............................. ATGGCGAACGAGACACCGCCCAGGCTCGCAAA 76728 29 100.0 32 ............................. GGCGAATTGAAACGCTCTCCACACATTTCAAT 76667 29 100.0 32 ............................. CCCCGGGGCTGTCCTCCGTGCTGATTGGGGTG 76606 29 100.0 32 ............................. CCGAATTATTGAGTACCGCTCACGATTTATGG 76545 29 100.0 32 ............................. CCGCATCTTGACAAGTCAAAAGGCAACGTTAA 76484 29 100.0 32 ............................. GAGGGACAACCTATGGAAAACAATGGTTCGTT 76423 29 100.0 32 ............................. TCCAACTGCCACTGTAGAGCCGAGTTCATCAT 76362 29 100.0 32 ............................. CCTGGCTGATCTCCTTTTTTGTTTCGGCGTGT 76301 29 100.0 32 ............................. ACCTCGCTTCATTTTCATCCTCTCTGCCGGGA 76240 29 100.0 32 ............................. AGAGGGGGCGACACCAGACCGATGTTCCGCAC 76179 29 100.0 32 ............................. CGAAAACATGGACGCCCGGTTGAAGCAGTTCT 76118 29 100.0 32 ............................. CTGCTTGACGGACATGGCGAGCGATTTCTGGA 76057 29 100.0 32 ............................. GGGACGGTGGGTTGCTCATGATGAGGTGGATG 75996 29 100.0 32 ............................. CGAGTAGGTCCGTTTGCTGTCGGGTCAGGCCA 75935 29 100.0 32 ............................. ACGAGCTGGAGATCGTGTCAGAGGGGACCGGC 75874 29 100.0 32 ............................. TCACCAAAAGAGGGGCCGTACTGATAAAAAGA 75813 29 96.6 32 ........T.................... ATGGCTGGCCGCTTGATGATCTGGCAGAGAAG 75752 29 100.0 32 ............................. GCTCATGCCTTTCTCGAGGCGTTTCTCTTCCA 75691 29 100.0 32 ............................. AGGCAGATGATGGGCGAGAATAAGCCACCAGA 75630 29 100.0 32 ............................. CGGTGTGCTCCTTCCAGCGTCACGCTGTCAGT 75569 29 100.0 32 ............................. GGATTATAGCGCTGATTATAATCGCCTGTGCT 75508 29 100.0 32 ............................. GTCGGTGACAGCGCAGAAGATATGTACCGTGC 75447 29 100.0 32 ............................. GCGATGTTGAATGTTACGCTGATCTGCTTCCG 75386 29 100.0 32 ............................. ATGCCTAATATCGTACCACCCTCATGCCCAAG 75325 29 100.0 32 ............................. ATTTAAGGCTATCATGCGTTTTACCCGGCCCA 75264 29 93.1 0 ............TG............... | G [75239] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.7 32 CTGTTCCCCGCCCATGCGGGGATGAACCG # Left flank : TTGCATGGCTCTCCTGCTGGAGCTGCTGCGTGGTAAGAACGAAAAGGGTGAGAAAATTGCGCTTCAAGAGCCTTTCTTGAGCGAAGAGCAGTTGAAGATTGCTGCCTCTGATGACGTCTCAGAGTCGATCAATCTTCCGGCTTTTGATAGCTGGCGTGATCTTCTGACACCTGAGCTCAAGAAAGAAATTGCACATAACCGGGAGTTGATCCGTAAGGAGGGTGTGCTGTCTAGCTTGCCTGTGTGATGCCACTGCGCATGACCGGTGTGTAAGTATGAGATGAAAAAAGGGAGGTTTAGTCCTCCCTTTTTTTATGTTCATGAGTTCTCTGTGGATAAAATTATTTTTTGCCTTGCTAGGCTAATGATGTGAGAGGGTTTTTTTATCCCTACAAGCAGAGAGGAAGGCTTGCGCTGGGGAAAGGATTAAAATTATATTTAAGTTGGTAGGTTCTTTGACAACAAAAAAAAGACTTATATTACTTATGGTTACAGGAAGT # Right flank : TGTTATTTATAGCATGCAGTTATCTGCCCTTTAGAGGGGGAAGCCGGCTAGTTGTGCTGTCGCCATAGCCATTCCAGAGCCTCAGGCAAAGTCTGCTCAATAGTGGGGGCGTCTACATGTTGGGCATTGCGGGAGAAAACGAACTGATAGTCATAGCCCTTGTTTCCCAGCACACGGGCCAGATTCTCGCCAGCTAATACCCAGTCATGCATCCCGTCTGGCATGGGGCGGACAGGGTAAAAGAGGTCCTGATCTCCCATTTCGTACCAGATATGTAGCGGGGCCCGTTGTGCGGCGGGTATGAGGGCAGCACCGGGCTGGGGTGGCACAGCGTGCGGTGTGCCTGCCCACGGGGAATGAAGCTGCCAACCGCCACCAGGCAGGGTTGGGTCATGCGGCCATTGCTGATTGACCAGAGATGGCGAATAGGCCAACACCCGGTGATAGAGATTCGGTCGAAACCACGCCATGGCAAAGGCCGCTGCCCCGCTGGAGCTAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.00,-12.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //