Array 1 645818-645386 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012283.1 Pediococcus damnosus strain TMW 2.1534 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 645817 36 100.0 30 .................................... CGGGGTCGCTTCCACATATCCTGTGGTCCA 645751 36 100.0 30 .................................... ACAATCGAACAATCAGGCGTCAAAATGGGT 645685 36 100.0 30 .................................... CCGTTGGTCCGACAACTTCCGCAGCTCTTT 645619 36 100.0 30 .................................... CCGGTCGTCGTCGGTTAAGTACCACTCATG 645553 36 100.0 30 .................................... GTGTGGCGTTGGCTAACGTTTTTGAGGGCA 645487 36 100.0 30 .................................... TAATGTAAAAAAGCTTGACTGTATACACAT 645421 36 91.7 0 .................................GAA | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.8 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : GGCTAAGTGTCTTACGACGCTTGGCTTGTGGCGATACATGATTCTGCTGATGTTCATAGTAAGTTGAGCGTGGAACTGAGAGTACTTTACAGGTTTCTTTGATACTATGGTGCTTCAAATTAATATCAACGGCTGTCTGCCAGTCATCTGGGTTTACTTTTTGGCGAATATGGTTAAGGCTTTTTTTAAGATGTCATTCTCACTTTCTAGCTGTTTCAAACGTTTTTGCAACGCTAAAACATCTGATTTGGAAATTCCACTTCCTTTGTCTTCTTTATATAGATTAATCCATTTGTAAATAGTTACATTTGATACACCATATTCGTCTGTAAGATCAGCTACCGGGGCGCCATCCTGGTACAGCTTGACAATCATTTTTCTAAAATCTACTGAGTACTTTTTCTTGGTCATAAAAACACAATCCTTCCTATTATGGAATTATACTAAATCGTGTCCATGATTTCATACTACCTTCACGGAGCGTTAAAGGCTTGGAGTTA # Right flank : TCAGGAGCGGCTTGACGCATTGAGGTAAAATAGTTTTAATTATTATCGTATATATAAAATAAATGAACCTCAATTGCACCAAAATCTGAACTTCATTAAAACAGAAAAGAACTACACAAGGAGCCAAGTATGCAAGTAACAGTAAAATCATTTTCAGAGTTATCCAATACAGAACTATTTAAAATCTACAAACTCCGTACCCAAGTCTTTGTTGTTGAACAATTATGTGCCTATCAAGAGGTAGACGATGAGGATCTCATCGCCCAGCATTTACAATTTACAAACGAGGCCCAACAGTTAGTGGCCTATTTACGAATCATCCCTGAAACGAACGAAACGATTGTTCATATTGGTCGGGTGGTTGTTAATCCACTCTTTCGCAAACAAGGGTATGGACGCAAACTCATTACGAGTGGACTTGAAACGATTAAAAAAGATATGCCAAAGGTCACAACGGTAAAGATTCAGGCCCAGGCTTATTTACGATCCTTTTATCAATC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 647714-647083 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012283.1 Pediococcus damnosus strain TMW 2.1534 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 647713 36 100.0 30 .................................... AGGTATCGTTTGTAATCCTACGAGTGCAAT 647647 36 100.0 30 .................................... GTGATACCAGTGCCGTTTAACGCTGACATC 647581 36 100.0 31 .................................... ACTTTCCAAAAGCCAAGAAAGCTGGTTGAAA 647514 36 100.0 30 .................................... CACTGATTAGTTTGGTCTCACAATCCAAGC 647448 36 100.0 30 .................................... ACGCAAGACCAAATTGATTCTGGCCCAGCA 647382 36 100.0 30 .................................... ATGGACGTTCATGTATGGCTCATTCTCAAA 647316 36 100.0 30 .................................... GCCCGTTTGGGTTTGGCCTTGAACATAATC 647250 36 100.0 30 .................................... TGTATTACAGGGTTTACATTGCCTACGCGG 647184 36 97.2 30 ................................A... TTCACCTACAATTAATGTATTACCCTTTAA 647118 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 99.7 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : AGCAGATTTAAATAAAATGTTTCAAGGACAATTACAAAAAAAGATCGTTTCGAAATTAGATGATGATACAAGATTGCAATTAACGGATCTTAATAATAAATTAAAATCACTTATTTTTGATGCTACGTTTTCGTTAGACCTTCCGTTAAAAGTAGATAGTGAATTTGATCCAGTTAAATTAGTTAAATACTGTAATGTTGGGTTTGTAAGTGCTTTAAATAGGGATCCTTATGATATAATTGAAACTGTATTAAAAACTGCTTCTGAATTAAAAGAAACAAAAATATTAATCTTAACTAATGTGCGCAATTATCTCAGTGTCAGCCAATTTAATGAATTGGTGAGTTTAATTAGCACGCTTGATTTGAACATTCTGTTTATCGAATTCTCAGATAACAGATAATCACGAAGAATTCGATAAATGCCGTTATTGCTACGTTGATCAGGATTTTGTTGATTGGCGTTATTAATGTCTATGAGAGTAGCATTATAAAAAAACG # Right flank : TAATAACGGTGGATTTAGGTCAAGAATCTGGACACATTTTATGTATAATTTAAGCGACTAATTTTTCCTTTTCATTTGGAGTTAAATAATCAATGCTACTGTGAATTCGAGAACTGTTATAAAAGCTCTCAATGTAGCTGAATATTGCAGCATTTGCTTCTTCAAAATCCTGATAATGGTGTTGGTAAACCTCTTCTTTTTTCAAACTGGCGTGAAATGATTCCAAACATGAATTGTCATAGGGACAGCCACGCTTGCTATAAGAATGGCGAATATGGTGTTGCGCTAAGATCTGTTCAAAGCCAGCACTGCGGTACTGGCTACCCAGATCGGTATGCACAATTAAGTTATTAGTCGTCTTTCTAGTTTCAAAGGCTTGTTGAAAAGTGCTGATCACAAGATCAGCAGTCATATGACGGCTGATTTTATGGGCAATGATTTTACGTGAATATAAATCCTGAATGCTTGATAAATAACACCAGCCATTGGCTTTGGTGTGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //