Array 1 1215802-1217991 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSRO01000001.1 Nitrosomonas cryotolerans ATCC 49181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1215802 28 100.0 32 ............................ TTCGTTTTGTTGTGTTGATGTATGTCATTATA 1215862 28 100.0 32 ............................ TTAGCGCTCTAGCAGATAGTTTTTTTGGTGGC 1215922 28 100.0 32 ............................ TTATGATATTTGGGCTCGTGACGGATTTTTAA 1215982 28 100.0 32 ............................ AGGAGGGAAACTACGACGGCAGAACAGAACTA 1216042 28 100.0 32 ............................ TGATTTAAGTTTAGCTAACCCCTCCCCCACCT 1216102 28 100.0 32 ............................ CATTGTATGAAATTTACTCTTATCATGACGGT 1216162 28 96.4 32 A........................... TCATTGCCACTGTAATTAATGCGATATTTAAC 1216222 28 100.0 32 ............................ AGTTGCCCAGCTCGGTATTTATCATACCTTTG 1216282 28 100.0 33 ............................ GATTTGAGCGAACCTCAATAAGAAGACCGCGAA 1216343 28 100.0 32 ............................ AGATTTATCTGCATAGGTTTGTACATTAAATG 1216403 28 100.0 32 ............................ GATCAGGTGCGTGCATTTGTGAATAATTCGGG 1216463 28 100.0 32 ............................ AGGGATTCATTATTGGCTCGCTCTTCGGCTGG 1216523 28 100.0 32 ............................ GAATGGCGCTGACGGAACATTATATCTCACAT 1216583 28 100.0 32 ............................ AGCATGGGCGCGTCAGTCGCGGCTATTGCAGG 1216643 28 100.0 32 ............................ AACACCAGGTAAAGATATCCCAGTACCACCCG 1216703 28 100.0 32 ............................ AAAACGTGAAATGTATATAGATTCTAGTGTTG 1216763 28 100.0 32 ............................ ATTATTAACGTCAATCAGATATCTATTTTCGT 1216823 28 100.0 33 ............................ TTATTTTGTCGATAATGACTACAAATAACTATT 1216884 28 100.0 32 ............................ ATTGAGCACTTAATGTGCCGAGCGTGGCTTCA 1216944 28 100.0 32 ............................ TGACATGCATACCAAAATGATAAAAGAAGCTA 1217004 28 100.0 32 ............................ GGAAGGATGGCTAGACACGGAAATAGAGGAGA 1217064 28 100.0 32 ............................ TGAAAGAATTTATATTAGCAATATTAGCATTT 1217124 28 100.0 32 ............................ TTTAGAATATGGTAGGTTTCTTGTAGTTTTCC 1217184 28 100.0 32 ............................ GTGACCCGCTTATCTTGATAAAGCATCGGCTC 1217244 28 100.0 32 ............................ TTGAAATTACCTGATTTTTTACTCTTATCCGG 1217304 28 100.0 32 ............................ GATCAATAACTGAGATAAGCTGCTCTGTTCCC 1217364 28 100.0 32 ............................ TTTGTGGGAGATGACAGGTTGATAGAAGGGTA 1217424 28 100.0 32 ............................ AGTACTCATTCGCGTCATACGGCTCCAGCGTT 1217484 28 100.0 32 ............................ ATCGATCATCTGCTTCATTCTCGTTTTTATCA 1217544 28 100.0 32 ............................ AGATAAATATATGAGAGGTAGTAGAGAACAAC 1217604 28 100.0 32 ............................ TTAGTCTCTGCACCTTCTAATGCTTTTATACA 1217664 28 100.0 32 ............................ ATCTCTATTTCGTCATCAATACGTTTTTCGAT 1217724 28 100.0 32 ............................ ATGATTCATCGGGCTGGCTGGTTAGTGACGGC 1217784 28 100.0 32 ............................ TACGGAACTTAAGAAGCACTACCATGTTCTTA 1217844 28 100.0 32 ............................ GTCGCTAAATATCGCATTAATGACGGCGGCAA 1217904 28 100.0 32 ............................ TAGAAAAAGCAAATCTTTCCCATAAAAATCTT 1217964 28 96.4 0 A........................... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.8 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGCTAACCCGGTTTGATGTTGCGAAATGGTTGACTCGATTAAGTGACTACGTGCACTGTACCAGTATCCGCTCCGTACCGTATGAGCTGAAAGGTTACGCGATATATCAACGTGAACAACCTAAAACTAACAAGGAACGCTTAGCCAGGCGCTATGCTATCCGACATCATATTGACTATGTCACAGCTATTCAGCGTTATAGCGATATGGAGTATAAGTTAATACCTACCCCATTTATTCGCTTGAAAAGCTTAAGCAGCGATAAAACATTTTGTTTGTGGATCAAGAAAAAAATAGCAGTAGAGTCTTCAAATAACACTTTTAGCAGTTATGGCCTAAGCGCTTTCGCTACTGTTCCTGAGTTTTAACCCATTTTTTTAGCTCTTTAAGAAATAGCATACAAATTAGCCAGTTGCATATATCGGTTTTGGGAATGGTTAAGTTAACTAAAATTTCCTGTAAACTGCGATGCGACTGGCTTTAAGTTTTTTTATTGCCA # Right flank : ATTGTCTGTAATTCACCCAGATTTCCCATTAAGCGGGAATTTTAATGGAAGCCATTAAAATAAATGGTTTTGACATCCTCCCCTTCCTAAACGAAGGGGATTCCTAGCGACTTATTAAGCCGTTAAGAGTAGGTTTGTATTGCTACTGTCTACTGGTTCCTGCTTCTTAGACGAAACTAACGTTTCAACTCCACAGGCTAACAAGCGATGTCCTCGCTCAAGTACATTCAAGGCACCTACCAAGTCGGCATTGGCTTTAAATCCACATTCTGTACATTCAAAAGCACTTTGGCTTTTGCGATTGTCATGACTAACATGTTGACATCTAGGGCAGGTTTGAGAGGTGTATTGAGGGTTTACCTTCAATACATCCCCGCCTGAACAAGCCTGTTTATACTCCAAGAACGAAACGAACATTCCCCATCCTTGGTCAAGAATGGATTTGTTTAGACCCGATTTCGCTTTGACGTTTTTACCATGCTTTTCAACACTGCCCTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7590-8101 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSRO01000002.1 Nitrosomonas cryotolerans ATCC 49181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 7590 37 81.1 31 CA...TC....AA....................T... TTACGAAAATATATCTAAACTAAAAAGGATA T,A,C [7596,7599,7601] 7661 37 97.3 31 .................................T... GTTTAAACCTTCGGATGTCAACATAGTCATC 7729 37 100.0 30 ..................................... CCCCATTAGAACTAGATTAGATATCTAACG 7796 37 100.0 30 ..................................... AATCATCATTACTTCTTACAATAAAATAAC 7863 37 100.0 29 ..................................... CCAAGTCTTCGGAATTGTTAGAAGATAGA 7929 37 100.0 29 ..................................... TCATACTTTTACAACAAAGAAATAAAAGC 7995 37 100.0 33 ..................................... ACATCAGTATGACGAACTACACATACCCTGGGG 8065 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================= ================== 8 37 97.3 31 GTTTCAAGCGTGTCTCTGCACGTCTTATTTCTGCAAC # Left flank : GCTATATTTGGCTGGAATAAAGGAACTATTTAATGGAGAGTTGGTGGGTTATTCTATGAGTGAAAGAATGACTAAGAATCTTGTTATACAGGCTTTGTTTCGTGCAACTGCCAGAAAACGTCCGCCCATAGGATTGATTCTTCATTCAGATCGTGGCAGCCAGTACTGTGCACATGATTATCAAGATCTATTGAAGCAGTTCGACATGACCGCCTCCATGAGCCGCAAGGGTGATTGTTGGGACAATGCACCAATAGAAAGTTTTTGGGGAATACTTAAAAATGAACTGGTGCATCATCGGAAATTCAAAACACGACAACAGGCAATTCAAGAGATTACCGAATACATCGAAATCTTTTATAACCGACAACGTAAGCAAAAAAGACTGCGCTATCTGTCACCGGCAGCATTTACTCAGCAATAATATTATGAAAAGCTTATAGCTGCTTAACCCGATGGACTCCATATTTGACAACACACATCACATCTGCCTAGTCAGG # Right flank : CCCCCATCCATTACTTGGTTTTTATCTCAGAAACAACAGCTTATCCGCTGTTCCCTGAGTTTCTGCAGTAAAACTGTATAACGAGTGTTTTTCCATTTTACCAATTTTTCGGTGATAACCTGCTTTTTTTTTCAAAAACATGATGCTGATAGATAATACACGATCTTGGAGAACCATTATAAGACCGATCTTAACATTGGGCGAGTCAGTCTGCCAGAATGACAATTTGAGGCGTACCTATATGCGCTACAAGCGTTAGCGCAAGCTACCCTGGACTTATACCCCAACGACTCACACTATACCAAAGAAATAACAAACTCATCTCCTCCCAAACCGCAAGGCTTCGCCATTAGTAATACGCAGGGACTTGGGACACTTTGGTTTTTCAAGTCTGAATATAGCGACCTACTGCGGTTTTACTGATGCCTAGCTGCTCTGCAATCGCCCGCACACTCAAGCCCTGCGCCCTTAGCGCTTGTGCCTGCTGCTGCTTGGTATTC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAGCGTGTCTCTGCACGTCTTATTTCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 17940-18853 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSRO01000002.1 Nitrosomonas cryotolerans ATCC 49181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================ ================== 17940 37 100.0 30 ..................................... ATCGAAAATGTAGTTGATCCTAAAAGTTCT 18007 37 100.0 29 ..................................... AGCTGAGCTGGTTACTGGCAATGAATTAA 18073 37 100.0 29 ..................................... ATAAAATGAACTTACAGGTGCCTTACGAC 18139 37 100.0 31 ..................................... GAAATGAAAAGGAGGGCCAGCATGAAGGTCT 18207 37 100.0 32 ..................................... CACACGGTAGTAATGGACGATCTACTGAGAAC 18276 37 100.0 29 ..................................... ATATAATTAAATACCTGAATGTTCATGCT 18342 37 100.0 30 ..................................... CATAAATCAGGTTATATATGTGTTTATGTT 18409 37 100.0 31 ..................................... ATTTCGTTATTAATTCTTACATCAAAGTAAG 18477 37 100.0 32 ..................................... GGGAAGTTTATGATAAGTTTAACGATATACAC 18546 37 100.0 31 ..................................... CCCTGAAGGTATGAAGCCTGAAGACTACAAA 18614 37 100.0 30 ..................................... GAAAACATTGTCAGAGCTTAGAACAACTAT 18681 37 100.0 30 ..................................... AATAAGCCAGTAGAAGCTATCGACGTAAAG 18748 37 100.0 32 ..................................... GGGAAGTTTATGATAAGTTTAACGATATACAC 18817 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================ ================== 14 37 100.0 31 GTTTCAAGCGTGTCTCTGCACGTCTTATTTCTGCAAC # Left flank : AGGATCTCTTTAAACGCGGGCGGAGTGATAACAGTTTTTAATTCAGATTTAAACATACTTAATCATGCATCACCCCTGTTATGGTGTCAAGCAATATCCAATAATGAAAACATCAAAGTTCAATGAGCAGAAGCTGATTGCATGGTTGCATAGACGTTGTTGAATAAATCGAACTTAGCGGCGAGAAGATAATCTGTCAGGCATAATGTTGAGGAATTTCACCTGCAGAGAAGCCAATGCCTTATAAACACAACGAGAACCATCGTCATAAGATCAAAAAATCTCGTAGAAAAATAGCCGGCTCAGGTTACTTGTAAAAACACAGACCATCGCGTACAACTAACCCCGTTTTCGTAATTCTCCCCTACAATTTCACCGTCTAGCCTGTTTGAAAATCTTCGGTTCACCATGTCGTCTGCCTAGTCAGGCATTTTCGTCGATCAACTCTGCACGTCTTATTTCTGCAACACAGTCAGCAAAAAATCGCGTCATCAGTAAGA # Right flank : CCCCCATCCATTACTTGGTTTTTATCTCAGAAACAACAGCTTATCCGTTGCTCCCTGAGTTTCTGCAGTAAAGCAGTGTAGCGGATGTTTTTCCATTTTACCAATTTTTCGGTGATAACCTGCTTTTTTTTAAAAACATTATGATGATAGATAATACACGATCTTGGAGAACCATTATAAGACCGATCTTAGCATTGGGCGAGTCAGTCTGCCAGAGTGACAATTTGAGGCGTGCCTATATGCGCTACAAGCGTTATCGCGGCCTGTGGGCGAACAGAATGCCAATGTCATCGGTCGCAAATGATCCGGTCGGCCCAATCCTAACACTTGCCGAGGCATTGCGTAATGGCAGTTATCGCCCTACCCCGCCAAAGTGCATATCAATTGCCAAGGCAAATGGCGAGCGACGAGATATCAAAGTTTATATGATTCGTGATCGTGTTGCCCAACGTGCATTGTTACAGGCATTGCAAGCGCGCACTGATCAATTGATGTCGCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAGCGTGTCTCTGCACGTCTTATTTCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 55933-55491 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSRO01000002.1 Nitrosomonas cryotolerans ATCC 49181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 55932 37 97.3 31 .................................T... GTTTAAACCTTCGGATGTCAACATAGTCATC 55864 37 100.0 31 ..................................... CCCCATTAGAACTAGATTAGATATCTAAACG 55796 37 100.0 30 ..................................... AATCATCATTACTTCTTACAATAAAATAAC 55729 37 100.0 29 ..................................... CCAAGTCTTCGGAATTGTTAGAAGATAGA 55663 37 100.0 29 ..................................... TCATACTTTTACAACAAAGAAATAAAAGC 55597 37 100.0 33 ..................................... ACATCAGTATGACGAACTACACATACCCTGGGG 55527 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================= ================== 7 37 99.6 31 GTTTCAAGCGTGTCTCTGCACGTCTTATTTCTGCAAC # Left flank : GAATCTTGTTATACAGGCTTTGTTTCGTGCAACTGCCAGAAAACGTCCGCCCATAGGATTGATTCTTCATTCAGATCGTGGCAGCCAGTACTGTGCACATGATTATCAAGATCTATTGAAGCAGTTCGACATGACCGCCTCCATGAGCCGCAAGGGTGATTGTTGGGACAATGCACCAATAGAAAGTTTTTGGGGAATACTTAAAAATGAACTGGTGCATCATCGGAAATTCAAAAACACGACAACAGGCAATTCAAGAGATTACCGAATACATCGAAATCTTTTATAACCGACAACGTAAGCAAAAAAGACTGCGCTATCTGTCACCGGCAGCATTTACTCAGCAATAATATTATGAAAAGCTTATAGCTGCTTTAACCCGATGGACTCCATATTTGACAACACACATCACATCTGCCTAGTCAGGCATTCTCGTCGATCAACTCTGCACGTCTTATTTTCTGTAACTTACGAAAATATATCTAAACTAAAAAAGGATA # Right flank : CCCCATCCATTACTTGGTTTTTATCTCAGAAACAACAGCTTATCCGCTGTTCCCTGAGTTTCTGCAGTAAAACTGTATAACGAGTGTTTTTCCATTTTACCAATTTTTCGGTGATAACCTGCTTTTTTTTCAAAAACATGATGCTGATAGATAATACACGATCTTGGAGAACCATTATAAGACGATCTTAACATTGGGCGAGTCAGTCTGCCAGAATGACAATTTGAGGCGTACCTATATGCGCTACAAGCGTTAGCGCAAGCTACCCTGGACTTATACCCCAACGACTCACACTATACCAAAGAAATAACAAACTCATCTCCTCCCAAACCGCAAGGCTTCGCCATTAGTAATACGCAGGGACTTGGGACACTTTGGTTTTTCAAGTCTGAATATAGCGACCTACTGCGGTTTTACTGATGCCTAGCTGCTCTGCAATCGCCCGCACACTCAAGCCCTGCGCCCTTAGCGCTTGTGCCTGCTGCTGCTTGGTATTCGCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAGCGTGTCTCTGCACGTCTTATTTCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //