Array 1 48947-47329 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLH01000014.1 Pararhizobium mangrovi strain BGMRC 6574 Scaffold11_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 48946 32 100.0 33 ................................ GCCGGCTTGGCGACGTCGAGATAGTGTCGCATC 48881 32 100.0 38 ................................ TGGCAGTTGCCACGTACCAGCGAGCGCCGATCCAGCGG 48811 32 100.0 34 ................................ GGCGGTGTAGGCGAACGACATGAGGCCCCGCATG 48745 32 100.0 35 ................................ ACACTTGTCCCGCGCGCTCGTGTCTATTGAAAAGG 48678 32 100.0 34 ................................ TCCGGGCCTGGGAAAGCGTTGGCATCCGTGTAAA 48612 32 100.0 34 ................................ AGCCACTCCATGACCTCCATGGCACCACGGACCT 48546 32 100.0 36 ................................ ATCGCCGGAGGAGGCTCCATGAGCACGACACTCCAG 48478 32 96.9 34 ......................A......... TGCCGATAGCGGATGTTGAGCAGGTACTGCGCGA 48412 32 100.0 34 ................................ GAAGACATGCAGTGGACGCCGTGGTCCGAGGAGG 48346 32 100.0 35 ................................ ATTGCGATGGCGCACCGCTAGCGAATGACCTTGAC 48279 32 100.0 35 ................................ GGCGCGAACCCGATCGGGTCGAGCGAGGTGCGCGA 48212 32 100.0 33 ................................ AGCGGGGCAGAGGCGATCCCGGTTTCCGAGATC 48147 32 100.0 34 ................................ CATGCGGCGATGGCAGTTCTTTGCGGGCTGTAAG 48081 32 100.0 34 ................................ AAGTCGATCCTGTCGATCGCGCTCGCGGTAGCCG 48015 32 100.0 35 ................................ ATCCGCGTGCCGGCAAGGCGCATGGCGTAGCAGTG 47948 32 100.0 33 ................................ CGCCCACCGTTCGGAACTTCTTGCCGCGCTGAC G [47934] 47882 32 96.9 33 ...............................T TACTACCAGGTCGATCCGGACGATGGCGGCGAC 47817 32 96.9 33 ...........T.................... CCGAGGAATGGGGGCAGCACAGTGGCTAAGTCC 47752 32 96.9 33 ...........T.................... GTCAGCCTTGGCAAGTCGTCCTCCGACCTTTCC CC [47746] 47685 32 100.0 36 ................................ ATGACGAGAGCCGACGAGAGCACGCGGGCGCAGGCC 47617 32 90.6 35 ...........T.......A.....A...... GATGGACAGACCGGTCAGGTCGTCGCGCAGGCGCC 47550 31 93.8 26 .........-.T.................... TAGGCCTCGAATCTTGCCGCGGTCGC Deletion [47494] 47493 31 87.5 36 .C.........T.-................G. CGCCGCATCCCCCGCTCCGCAAATGGGCGCGGAGGG 47426 32 96.9 33 ......................A......... TGGGCGAACCACGCCGAGGACCCGGAGAACGGG C [47416] 47360 32 93.8 0 ....T......T.................... | ========== ====== ====== ====== ================================ ====================================== ================== 25 32 98.0 34 GTCGCCCCCCACGCGGGGGCGTGGATAGAAAC # Left flank : GGTGCCCGTGTCGTGGGAAAACCTGTGGCCGTCGTCGTTCAAGGGCGATCGACGTGGTGGCGTGGCACCGGCGTTCCAGCTCGCGTTTCTGGGCCGGATGCTCTTTTCCTGTCTCGTCGACGCCGACTTCAAGGACACCGAGCGCTTCTACGCCGCGGTGGAAAGGGTGATCGTCGACCGCGACTGGCCGGCGCTTTCGGACGTCCTGCCGCGGCTGCTCCGCCAGTTCGACGCCCATATGGAAGGCGGTGGCGGAAGCGCCAGCGACGTCAACCGTCGCCGCAGCGAGATCCTCGCCCATGTCCGCGAGCAGGCTGCATTATCACCCGGCCTCTTCACTCTGACGGTTCCGACCGGCGGCGGCAAGACGCTGACATCGCTCGCTTTCGCCCTGGAACACGCGAAGCACCACGGCCATCGTCGCATCATCTACGCAATTCCGTTCACGGGGGCGTGGATAGAAACTCGTTCATTTTGCGCGGGTTGCGCTGCTATAATCC # Right flank : GTTACGAAGCTGATGATGCCGGTCCCAATAGCCCGTCGCCCCAACGCGAAGGCGTGGATTTGGTCATTGCGGATGGCTTGCCGTTCCTGTCGAGTACGGTTTCCGGCGTCGGGATTGCGTATTGTCGTCGAGCGCATGGGCATTGAGACGGTGACGGTTGGGTCGCGTCGGCTTTCGGGAAGCAGGCATCCGTTTGGGGGTGAAACGCAAGGGAGCCGATGCCGGTGCGTTCGCCGGATTTGCTTCGCATGACTTGCGATTGCGGGGGTTCCCTGCCGATTGAATCTCCAATGAGGACAATATCTCCGGTTCAAGGTGCCGTTATATTCGGCAGAACGGCGAATATTTGCGCTTGCGCCATTCGGGAGGGCGTGCCTAACTGAACCAAGTACAGATTGGTCCGGTGCCTTCTTCCACGGGTGACGCATGGACGCGACTGGCAGGCCTGGCGACAATTCTCCGACGGCGCTCGAGCGCATCAGGGCGCTGCTTCATCCCGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACGCGGGGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //