Array 1 122026-123457 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLH010000004.1 Aerococcus urinae isolate Au-30-B02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 122026 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 122087 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 122149 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 122210 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 122271 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 122332 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 122393 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 122454 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 122515 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 122576 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 122637 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 122698 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 122759 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 122820 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 122881 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 122942 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 123003 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 123064 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 123125 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 123186 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 123247 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 123308 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 123368 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 123429 28 75.9 0 ......-....C.......T.T.A...TG | A [123447] ========== ====== ====== ====== ============================= ================================= ================== 24 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 142408-143166 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLH010000004.1 Aerococcus urinae isolate Au-30-B02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 142408 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGAATGG 142469 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 142530 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 142591 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 142652 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 142713 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 142774 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 142836 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 142897 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 142958 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 143019 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 143080 28 93.1 32 ......................-A..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 143140 27 86.2 0 .................--.......TT. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.4 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //