Array 1 60982-61347 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXC01000004.1 Ruminococcus sp. AF17-11 AF17-11.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 60982 36 100.0 30 .................................... TTGAGTAAGACGATAAACAATCGTGTGCAG 61048 36 97.2 30 ................G................... AGTGTCAACCTCTTGGATGATGTAGTGGTC 61114 36 100.0 30 .................................... AACGGGATTAAATCCGTCTCTGCGTTTCAG 61180 36 100.0 30 .................................... GATTGTAATTTCTTTGTATTTCTGAGATAC 61246 36 100.0 29 .................................... CCTCACGACCCATTATTTCAACAGGCTTA 61311 35 88.9 0 ........................G....-....TT | AT [61333] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Left flank : AGATACAGTTTTAAAAGTTAAATTCGGTGATATGGGTGCTAAAATCATATCTCACCGTGATGCTTTTGAAAAACTGGATATTAGAAAACAATGTTTTGTTCTTACAGAAATACTCAAAATCATACATTGTAATGCTGTTTTAGGAAATCTTACGTATATTGGTGAGGGTAGTTCTTCGGGAAGAGTTGGTTTAAATTCCGTATTGTCGGAGGTTAAAGGTGTAAAGTCGATTTATCTTGTTCATCAGTCGGTAACAGGTTTGTTTGAGAAAAAGATTGACTTATTAAATATGTAAGTTATCAGAAAAGAGGATATTTAGATGAGTTGGAGAACGGTAGTAATTACGAAAACATCAAAGCCGGATTACAGCATGGGACACCTTGTTGTGATTGATAATGATTTATGCGGATTTTATTGACAATCATTATACAAATGTTATAAAATATCCTTATAGATTTGCCGTGCGCAGTATAGTGGGTGCATTTTATTCCAAATTTGAG # Right flank : TTTACTCGTGGACTGTGAAAAAACAGCATTGCAAAAAACAATAAGGCACATAACCGTTATCACATTCGGTTATGTGCCTTTTGTAGTTTAATAAGTTTGTTAAGAATATCACGATTGATTACAGTCCAAAACAAGGAAGATTTCAGTGCGTTAATTCCAAAAGTAAGTTCCACCATGAAAGTTACTTTGGGGATTAACTATTTACTTTTTTGTTTAAGTTTGCGGTAAATATGAATTGTATAATCCGTTTTATTGTGTTATTATGTAGTAAAATGGTGTGCAACATTAGTGTTTTGAAAAAATTATGTTGCTGAAATTAAACTTGAAATAACTGACGGGTGGCATATGGTTCGCAAAGTTGACAAAACAAAGCTTCTGACTGTTGTCGGGATAATTATATTCCTGTTCGGAGGTGCGGTGAGAATTTTTTCTCATCTTACTTCCTCGGCGGATAATTATATTGAAAATTTTGATGTTATTATCTTTTCGGGGCTTATTAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 640876-641903 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXC01000001.1 Ruminococcus sp. AF17-11 AF17-11.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 640876 31 93.5 36 .................AG............ TTAAAACGCAGGTTGATAAACCATTACCTGACCGTT 640943 31 93.5 36 .................AG............ TGGTCCCCAAATACCATCTACTACAAGACCAGCATT 641010 31 93.5 35 .................GG............ CCCCACAAGTGTCGCATTGTCGCCACCCACAAGTT 641076 31 93.5 37 .................AG............ TTGTCCTCTCTGATTTTTCCGGCTGTTGTTGTAACAA 641144 31 100.0 35 ............................... AGCTATTTCTGGAACCGTTCTGGATTGAATCCAGT 641210 31 90.3 37 ...........A.....AG............ TAGAGTGCCGTCACCGAAACCGTTTGAGTTATCGACC 641278 31 100.0 35 ............................... CTGGACAACAAACTCGGAATGTTTGACAATGGGGG 641344 31 100.0 34 ............................... TTCCATAAATGTCACCTCATATATTTTTTATTGT 641409 31 93.5 34 ...........A..G................ CTCACTTTTTTGAGTCGATGTTGAAAAAACCAAG 641474 31 90.3 36 ...........A.....AG............ TTGGAATCATATTACATTACAAACAAATGCCATTTA 641541 31 100.0 35 ............................... TTCTTCCTGCTGATTTTTTGCAAATCTGAAACAAA 641607 31 100.0 36 ............................... TGTTGGGTTATCACCCCAAACTGCCATAACGGCATT 641674 31 93.5 36 .................AG............ CCCTTGTAATTTCGCTTGCTCACCCTCGTTCATCAA 641741 31 100.0 35 ............................... TAGCATAATATGCTGAAACAGCTGTATCCTGTACG 641807 31 93.5 35 .................AG............ TTAAGTTTTCTGTGGGTGTTCGTCACTCCACTGCT 641873 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 16 31 95.9 36 GAACCAACCCATCCCCACTCGGGGACGAAAA # Left flank : TTCCTTTTTGACAATGTTTACAACAGCGTTTTCCTTGCTTGTTAGTACAAATGACGAAAAGCTCTTGTCAGCAAGAACCTTGAATATTTTATCGTATGCCTCTTGACCGACAGTCGCAACTGTCCAACACCATTCATCGCCATTTTTAACAAGGCTTGTGCTGAAGGGATTAAGGTTGTTGTTATGAAGAATGTTTGCGTAATCTGTATCAATAGCCGACATAATAACTCCGTGTAAAACAGAAGAAATATACCGTGTAATTTCAAAATCATCACTTGTTATATACATTCTTAATTTTGTCAGCATAACAATAAAACATCCTTTGTACAATTTAGCATAATTATATCACTTATTTTCACATATTTCAACATTATTCACAAAATAATTTTAAGAAAAATTGCAAAAATATCAAAATAGCTTATTTTAGCGTCACCACTTTTCAAAACCTCTTGCTTTTATTTAAAAATTTGTGTACAATTAGTGCGAAAGCAATAAATAAG # Right flank : AAAGCACCTGCCAAAATCGGTAGGTGCTTTGTCTTATGATATGAAATTTATGTGCCTTACTATGGAATACATACTGCGAATTTACTTTTAATAATTCTGCTTTAAAGGTGCATAACTGTTGCCTTGACGGAGGTAATTTTAATTGCTATAATTTATACAAATGGGGTGGTGCTTTGAAAAAGACAAGACTGTTGAAAATTGTCCTCAAACGGACGGGTGCAATCAAGCTTTTGTGCAGTTATGTTATCGTATTTTTTGCGGTGAGTGTTGCAATATGGATTTTTGAGCCGAACATAACTCGGCTTTTTGACAGCATATGGTACTGCTTCAGCGTTGCCACAACAATAGGTCTTGGTGATGTGCTTGCAACAACGCTTGTCGGCAGAGTGCTTTCAATCTTTCTTTCGATATGTTCAATTCTTATCATTGCAGTAGTTCCGGGCGTAATCACAAGCTACTATGTCGAAAGCACAAAACTTCGTGCCGACGAAAGCAGTGCA # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACCAACCCATCCCCACTCGGGGACGAAAA # Alternate repeat : GAACCAACCCATCCCCAAGCGGGGACGAAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //