Array 1 55791-54970 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMCV01000005.1 Escherichia coli strain MOD1-EC6110 MOD1-EC6110_5_length_159628_cov_23.2434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55790 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 55729 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 55668 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 55607 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 55546 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 55485 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 55424 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 55363 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 55302 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 55242 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 55181 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 55120 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 55059 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 54998 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75118-73869 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMCV01000005.1 Escherichia coli strain MOD1-EC6110 MOD1-EC6110_5_length_159628_cov_23.2434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75117 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 75056 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 74995 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 74934 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 74873 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 74812 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 74751 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 74690 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 74629 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 74568 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 74507 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 74446 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 74385 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 74324 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 74263 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 74202 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 74141 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 74080 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 74019 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 73958 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 73897 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTATGAAATTTTAATATATTATTTTTTTAATTTTGAATTATTGCCTGTTAATTTTTTCTTTAGATTATCAGTATATTTTTTATGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //