Array 1 106791-102561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGXM010000006.1 Dokdonella fugitiva strain RH1CCR139 Ga0326536_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 106790 29 96.6 32 ............................C AGAGCAGGCCCGGCAGAACATGGTCGAAAACC 106729 29 100.0 33 ............................. GAATCCCTCGAACAGCGCATGCATGATGTACGA 106667 29 100.0 32 ............................. GCTTCGGCATGCGCCCACGCCGTGACGTGGGC 106606 29 100.0 32 ............................. GCTTCCCGCTGAACGGTGTGAACGACGAAGTG 106545 29 100.0 33 ............................. CGAGGAAATCTGGGTCGCGCTGTGGACGCCTGG 106483 29 96.6 32 ............................T CCAGCGCGCCACCGACGCGGCGGTTGCCAGAG 106422 29 100.0 32 ............................. GCAATCAACCCGTAGCTACGCATTGGGTCGCT 106361 29 100.0 33 ............................. CACTGCGGGTCGATGTCGTAATCGCCCACCGGA 106299 29 100.0 32 ............................. TGGGACAGCGATACGAAGGGCGGCTGCGACAA 106238 29 100.0 32 ............................. GCCACGCACGACCTCCACCGCATCGCCGTGGT 106177 29 100.0 32 ............................. TCGAGCACGCCATCGGCATCCATGTACGGCAG 106116 29 100.0 32 ............................. TCGGCCGTGGACAACACGTCCGGCTCGCCGTC 106055 29 100.0 32 ............................. TGCACGCGCCGCGTGGCTTCCGGCCTGCACGA 105994 29 100.0 32 ............................. CTCCGTCCAGTCGTTCGGCGCGGGCGTCGCGG 105933 29 100.0 32 ............................. TTCGAGGCGTGGGGCCTGCTGGAGCTGTTCGG 105872 29 100.0 32 ............................. TTGCCGATCTGCTCGGCCACCACCACCGCGTG 105811 29 100.0 33 ............................. AACGCCGAGACCGTGCGCATCGCGAACGAGCAA 105749 29 100.0 32 ............................. AAGCCGCACTGTTCGCCGTCCGGCGTCACGAT 105688 29 100.0 33 ............................. GCTGGGAGCCGGTGTTCGCATCGCCGCCGACGC 105626 29 100.0 33 ............................. AACCGGCCGAGCTTCTTCGCACCCCACTTCGCG 105564 29 100.0 32 ............................. TCGATCGCGTCGAGCGCGTCGATTCGATCGGC 105503 29 96.6 32 ............................T TCTTCGCCGGCGACTTCCGCGCCGACGTCTTC 105442 29 100.0 32 ............................. GCTATGCGTCCGGAGCGCTACAACGAGAAAAC 105381 29 100.0 33 ............................. GACGGCGGCCGGTACCTGGAGGTCATGGACCGC 105319 29 100.0 32 ............................. CGGCTTCCGCTGTTGTACGTGCGATTACGCAT 105258 29 100.0 32 ............................. GACGTGCATGCTGGCGTCGGTCTGCTCACTGG 105197 29 100.0 32 ............................. AAAGCGGGCTAACTACAGCGGTGCAGATAACT 105136 29 100.0 32 ............................. CTGGTCGAACGGCTGTGCCGCAACGGTGAAGG 105075 29 100.0 32 ............................. GAAGACCTCGCCGAGTGCGGCCGGGTGGTTAC 105014 29 100.0 33 ............................. CAGGACGGGAAGGTGCGGCAGGCCATGCAGGCC 104952 29 100.0 32 ............................. GAAGATGGCGGGATCGATTTCCAGGAGATCGA 104891 29 100.0 32 ............................. CATCGGCATGGTCGCGCTCAGAGGCGATACGG 104830 29 100.0 32 ............................. TCGCGCGGCGACAGAAGACGAACCTCCCCGTA 104769 29 100.0 32 ............................. CTGGATCAGCGTTTCGACAATGCAACGGTCCA 104708 29 100.0 32 ............................. ATCAGCTTCGGATGCGGCAAGCATACGTGGCC 104647 29 100.0 32 ............................. GCAGCTCAGGCACTCGACCCGCCGTGCCAGAG 104586 29 100.0 34 ............................. GACTGTTTCATAGGTGGTCGTCTCCAGGGCCTGC 104523 29 100.0 32 ............................. TGATGGATGCGCGCAGGGTGTTCGTCGACATG 104462 29 100.0 32 ............................. CGCGGACGTTGGATGCTGCGCGCAATAGTTGC 104401 29 100.0 32 ............................. AATGGCGTTGTCCAAGCGACCGTTCTGATAGG 104340 29 100.0 33 ............................. TCCGCCCACACCTCGTTAGCGGGAATGTCCAGC 104278 29 100.0 32 ............................. CCAAGAATCGCGAGCAGGACGGCCGCGACGAT 104217 29 100.0 33 ............................. CCACTCGCGCACGGGGAAGCGCGGCAGGTTCTC 104155 29 100.0 32 ............................. AAACTGTTCTACCGCATCTTCACCGGCGCGAA 104094 29 100.0 32 ............................. TGTTTGCTCTCAGAGATGTAACTGCCTCGCTG 104033 29 100.0 32 ............................. ACGTTCTTTCGCTTCCGGGAGCGGCTCCCGCG 103972 29 100.0 32 ............................. CCGGACGTACTAGGCATTGCGCACCATTTGCG 103911 29 100.0 33 ............................. GACGGTCCGCCACCGGACGGCGGCCCGCAGCGC 103849 29 100.0 32 ............................. TCGGCGCCGTTGACGTTGGCGACTTCGAAGTC 103788 29 100.0 33 ............................. AGCTTTGTGCGTATTGATAGACCTGCGCGCTTC 103726 29 100.0 32 ............................. CTCGAACGTCCTGCTCTTTCGTGGGGGCTTGG 103665 29 100.0 32 ............................. AACTCGGCGCCACACGAACCTGCGCAGGTCCG 103604 29 100.0 32 ............................. GATGCATCCTATACCCGACTGTCACAGGGAGT 103543 29 100.0 32 ............................. TAACCACCGAAGCCCGCCGAGCCATTCTCGCG 103482 29 100.0 32 ............................. GCTGCGCGACGGCCCATGCTGCGCCGCATGAT 103421 29 100.0 32 ............................. TCCTACCAGGACCAACTGCAGGGCGCGATCCG 103360 29 100.0 32 ............................. CTACTGGGCGAAGCGATCGGTCGCAGCGCTGA 103299 29 100.0 32 ............................. CCGTTCTGATCGCGCTCCATGCGTGGGTCGCG 103238 29 100.0 32 ............................. GACTCGAGCGTACCCATGGCCGACATCGTGCG 103177 29 100.0 32 ............................. CGCGCCCCTTCATCCGTGCGCACCATCGACAC 103116 29 100.0 32 ............................. CGCGCCGATCGGCTGCAGGCGTCAGGCTCACA 103055 29 100.0 32 ............................. AAACGGCCGAGCTTCTTAGCACCCCACTTCGC 102994 29 100.0 32 ............................. GTTTCCGTCGCGACGACCACGGCGAGGCCCAG 102933 29 100.0 32 ............................. GCGACCGTGAGTCCATCGACCAGTGCGGTATC 102872 29 100.0 32 ............................. GTGGAACCATCAGCAACACAGGACGATGATGT 102811 29 100.0 32 ............................. TTCGACTACTCCGGTGCGACGCCGGCGACCGG 102750 29 93.1 13 ...........................GA TTGCGCACGGCCT Deletion [102709] 102708 28 93.1 32 .....................G...-... GTCAGCAGCCGGAACGCCGCGAGAATCCACGC 102648 27 86.2 32 ............--........C.....C CGCACGCGAGAATCCGGCAAGACCTGTTCGGC 102589 29 96.6 0 ...........................A. | ========== ====== ====== ====== ============================= ================================== ================== 70 29 99.4 32 GTGTTCCCCGCGCGTGCGGGGATGAACCG # Left flank : GGTCGCATCATCCCGCTTATCGAGGATGTTCTTGCCGCAGGCGAGATCGAACTGCCCAAGGCTCCTCCCGAAGCCGTGCCGCCTGCCATCCCCAATCCCGAGTGCTTCGGTGACGTCGGACACAGGAGTCGCTGATGGCCTTCCTCGTCGTCGTCACCGAGAATGTACCCCCACGTTTGCGTGGTCGTTTGGCCATCTGGCTGCTGGAAGTGCGAGCAGGTATCTATATTGGCGATGTTTCGCAGCGTGTCAGGGAGATGATCTGGCAGCAATTGGAAGCCGGATGCGAAAGCGGCAACGTGGTCATGGCATGGGCAAGCAAGACCGAATCCGGTTACGACTTCCAGACGCTGGGCGAAAGTCGCCGCGTGCCGATCGACTACGATGGACTGCGGCTGGTTGCATTCACCCCTCCGCCACCGAGTGCTCTTTGACATTCCGGAATTGGTGGATTTTCTCCTCCGACCTTTCCCGTGCCGAAACAATGGGATAGGAAAGGA # Right flank : TCGCGCTTGGCCTTCTCGATTTAGCCGATCTTTATGCTCCGTCCCTGGCAGAGGCGACGGACGAGGCTACCAAGAAAGAGTCGCGAACGTCGTCGCGCCCGAAAAAAGCAAGACCGTGCTTCAGTCCGTCAGCCGCTTTCTTGTGCGGCAGCGCCGATGCACGCCGGAGCCTTGCGCGGCGCGATCCATAGCCGCAGCACGAACCAGCCGAACAGCAGCGCGCCGACGGCGAAGATCGTGTCGCCGGGCATGCGCAGCCAGATCAGGAGGTGCACGATCGCCTGGTCCATGAAGTGTTCCGAACGCGCGAACCAGTAGCCGTGATCGAGCGCGGCCGACAGTTGCAGCACGCCGAGCGGCAGCAGGGTGAGAAGGGCCATCAGCGTGAGGCCGATGTTGAGTGACCAGAATGCGCCGCGCAGGCGTCCTTCGCTCCACGCCACGTCGGGCCTGAGGCCGCGCAGGCAGAACAGCATGAGGCCGAGGCCGAGCATGCCGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //