Array 1 36971-34073 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXMO01000003.1 Pseudomonas balearica strain Z8 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36970 29 100.0 32 ............................. GCCGGTAGCTGCCCACGTTGGTGGCGATCGCC 36909 29 100.0 32 ............................. CGCTCGAGCAATGGGCGGAATCTGTTCTCGAT 36848 29 100.0 32 ............................. CCATGAGCCGCCACAGCGCAAGCTCGCTCGAG 36787 29 100.0 32 ............................. CCCCCCAAGCGCAACGAGTTCGACGAGGGCGA 36726 29 100.0 32 ............................. CCACGACAGCGGAGAACCGGCCGCGATCGGCG 36665 29 100.0 32 ............................. CGAGAGGTTGAATCGCTGCAGGCGGAGTGCCA 36604 29 100.0 32 ............................. GGAGCGGGCCAGTTCTAGCGCCTCGCGGGGAG 36543 29 100.0 32 ............................. GTCTTGCCACAATCCCTGCTGACGCTTGATGC 36482 29 100.0 32 ............................. CCGGATCCGCCGCAGTCGGAGTGCTTGGTAGC 36421 29 100.0 32 ............................. GGCGCCGAACCCGGTAAGGGTCCACCACGCCG 36360 29 100.0 32 ............................. TTCGGCGTCACGACCGATGCGGCCAAATTCTG 36299 29 100.0 32 ............................. GGCTGGCGATAGCGATCAACGATGCCGCGCTG 36238 29 100.0 32 ............................. GCGGATACGGTTGCTTCGTCGTGGTCTTTCAG 36177 29 100.0 32 ............................. TCAGACATTTATGCGACCTCCTGCATCTGGGC 36116 29 100.0 32 ............................. AGCGTGGGCTTTTCAGGCCCTGACGCGGTGCT 36055 29 100.0 32 ............................. GCGGGCTCTCGCTATCCCGACAAAATCAAAAT 35994 29 100.0 32 ............................. ACAACCCACCCCCGCAGCTTGGCTACAGGCTG 35933 29 100.0 33 ............................. CAGAACGACATGCTTCGGCAGGAGTGGCCATGA 35871 29 100.0 32 ............................. CCAGCGAGATCGCGCCGCAGGGCATCTATCGA 35810 29 100.0 32 ............................. AGGGCATCTGCCCTCCGGGCGAAAACTGCGAT 35749 29 100.0 33 ............................. TAGGTAACGACAGGGCTGATATCGCCGACAGGC 35687 29 100.0 32 ............................. ACAACCCACCCCCGCAGCTTGGCTACAGGCTG 35626 29 100.0 32 ............................. TGCCTGTTCATGGCAGGACACATTGATAGCCC 35565 29 100.0 32 ............................. CGCTCCTCGGCGACCGTCCAGCCCCAGCCGAT 35504 29 96.6 32 ............................A AGTTGTTATAGCTAACCAACTCATCAGCGGCC 35443 29 100.0 32 ............................. CTCCCATCCAGACGGGGAGTGTAGGAGTTAAG 35382 29 100.0 32 ............................. CTCACCCGCGCCTTCGCGCATCCAGGAGACAT 35321 29 100.0 32 ............................. GATTCGGCGGCGTCCTGACCATCGTTCACCCA 35260 29 100.0 32 ............................. TCGGCGTACTCGCTGCGCGGCTCGTCATCGTT 35199 29 100.0 32 ............................. AACGTGGTGCTGCCGTCGTTGCGCGAGGGCCG 35138 29 100.0 32 ............................. TTGTGATCGTTCCATACAAAGGCGAGCCACAA 35077 29 100.0 32 ............................. GGGGCCTGAGCCGGAGGCCACGACTTGATATC 35016 29 100.0 32 ............................. GCCGGCGAGCAGCAAACGGCTACGGTCGACGC 34955 29 100.0 32 ............................. TTCGCGCCGCCGCCAACGGGCGCTGGCCGGAT 34894 29 100.0 32 ............................. CAATCACCGAGGCCGGTACTGACGCCTCTGTG 34833 29 100.0 32 ............................. CCCGTTCAGGTTTGCACGATCCAGACGCTGCG 34772 29 100.0 32 ............................. GTTTTCAGCGTTGTTGCGTCCAGCAGCTGCAG 34711 29 100.0 32 ............................. CTGAGCCGGTAGCGGCCAGTCTCTTCGTCCTT 34650 29 100.0 32 ............................. CCGGCGAGGGCGCGACCGTGACCTGGGTGCTG 34589 29 100.0 32 ............................. GGCAGGGCCTTGCTCAGCGCTGAAGAAGTCGG 34528 29 100.0 32 ............................. CCACCTTCGGTAATCGCTTCAAGATCGAGGAC 34467 29 100.0 32 ............................. TCCGGCGAGTCCCAAGTGTTCACGAAGGGCGG 34406 29 100.0 32 ............................. CCAGCGTGCCATCGGCCTGCTCGGCGTATTCA 34345 29 100.0 32 ............................. CCGCCGGCGACCTTGACGCTGTTGGCCTGAAC 34284 29 100.0 32 ............................. CCTCGGAGTGATGTGATGGCAACGGCGAACGA 34223 29 100.0 32 ............................. TAGCCAGTATCGCTCCCGAATGTGGTCAGCAC 34162 29 100.0 32 ............................. GCGCAACGCGAAGAACTGGCGCGGGCACTTGA 34101 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CGGCCGCATCATCCCGCTGATCGAGGAAGTACTCGCCGCTGGGGGCATCAACCCGCCCGAAGCGCCGCCAGAATCCGTTCCGCCGGCCATTCCCAATCCGGACAGCCACGGCGACGTCGGCCACAGGGCGAAGTAATGACCTTTCTCGTCGTCGTTACCGAAAACGTACCGCCGCGCCTGCGCGGGCGGCTGGCGATCTGGCTGTTGGAAGTCCGGGCAGGTGTCTACATCGGCGATGTCTCGAAGCGCACCCGCGAGATGATCTGGCAGCACCTCGAAGCCGGATTCGAGGACGGCAATGTCGTCATGGCCTGGGCCAGCAAGAGTGAATCCGGCTACGACTTCCAAACGCTCGGCCCCAACCGCCGCGAACCCATCGACTACGACGGCCTTAGATTGGTCGCTTTCCAGCCGCCGCAACCCCCTGATCTTTAACAAAAGAACTCGGTAGATTTTTCGTGGCCGATTTTCTTCTTGTAGGACAATCGGTTACGTTTGGT # Right flank : GCCAGAGCTGCGGCATGGTGAATGGTGTGCGCGCGTTCCCCGCAGGCGCNNNNNNCGTGCGTTCCCCGCAGGCGCGGGGATGAACCGGCCAGAGCTGCGGCATGGTGAATGGTGTGCGCGCGTTCCCCGCAGGCGCGGGGATGAACCGTAAGGAGAATGCCGGGGGCGCGGCCCCTGACCGCGTTCCCCGCAGGCGCGGGGATGAACCGCGGCGAACGCCAGATGGTGGCGCGCTTGTCGGCGCGTTCCCCGCAGGCGCGGGGATGAACCGTTCCGGGTCGATATCTACCAGGGCGCGGCTAAGCGTTCCCCGCAGGCGCGGGGATGAACCGTCCGAATGCTTCCCCTGTCCGCGGCAGACCTGGCGTTCCCCGCAGGCGCGGGGATGAACCGGCGGCGGCCTCTCCGGTGTAGTTCTGGTCAACGCGTTCCCCGCAGGCGCGGGGATGAACCGTGTACCCATACCCTACCGACCCAACGTATACCGCGTTCCCCGCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48184-46811 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXMO01000003.1 Pseudomonas balearica strain Z8 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48183 29 100.0 32 ............................. TAATCAGCCGCAACCTGTCCGAGGCAATCGTG 48122 29 100.0 32 ............................. CTGTCGCCCTCGATGCGGACCAGCGTGCAGCA 48061 29 100.0 32 ............................. GCATTTCAGGCTCTCTATGACTCGCTTTATCC 48000 29 100.0 32 ............................. TCACTGGAAGATCCGGAAGACACTCTGCAGTG 47939 29 100.0 32 ............................. GCGCTGCAGTGCGCTGCGGAGTTCATGGGCGC 47878 29 100.0 32 ............................. ACGCACAACCGAGTTGCCGATGCTGATCGTCA 47817 29 100.0 32 ............................. CAGACATGATCACCGCAGCACAGGAGGCCGGA 47756 29 100.0 33 ............................. CACTACGGACCCATAGGGCGCCGCGAACAGCCG 47694 29 100.0 32 ............................. ACAACACCGCGCAGTTCCTTTTCGCCGTTGAG 47633 29 100.0 32 ............................. TCGTAGCCCAGCCCGGCGTTGGCAAGAAAGAC 47572 29 100.0 32 ............................. CACGCATTAGGCGTGAAGCAAAACCGCCACCG 47511 29 100.0 32 ............................. ATTCAGGACCGTCGCGTTCAGCAGTTGACGGA 47450 29 100.0 32 ............................. TCCCTGCGCGAGCAGTTCGCCCAGGAATACTC 47389 29 100.0 32 ............................. GTATCCCTACGTCGACAGCTGCGAGTTTGAGA 47328 29 100.0 32 ............................. TCTCCCTGGTCACGTTCCCGGCGAACGATGAA 47267 29 100.0 33 ............................. GCGTGCAAATGGGCTTCCCAGTCCCGCGTTGGA 47205 29 100.0 32 ............................. CGCTCGCGTATCTCTACGGGCAGGTTCTCGTA 47144 29 100.0 32 ............................. ACGACGGGCTTGCGCAAGAGTGGCAGGGACGC 47083 29 100.0 32 ............................. GGCGCCCGCTTCGAAGTGAGCCCCGCCGATGC 47022 29 100.0 32 ............................. CTCTCAACCTGCTTCGAGCTGTGCCGGGCCTT 46961 29 100.0 32 ............................. TAGACGGCGACCAATGCCGCCAGCATGAGGAA 46900 29 100.0 32 ............................. CTGAGTCAGGGAATTGCTGACAGTCGTAACCG 46839 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : TGGGTGGTGCCGGCTACGTCGAGGAAACCATCCTGCCGCGCCTCTACCGCGAGGCGCCGGTCAACTCCATCTGGGAGGGCTCGGGTAACGTGCAATGCCTGGACGTGCTGCGCGCACTGTCGAAGGAGGCCGGTGTGCTCGACGTCTTCTTCGCCGAACTCGGCGACGGCCAGGGCGACAGCGATCTGGCGGCGCATATCGCCCGCCTCAAGCGCGACCTGCACGACACCGACGACATCCAATACCGCGCCCGCCAGCTCACCGAAGACATGGCCATCGCGCTGCAGGCCAAGCTACTGCTCGAAGCCGGCAACAGCGCCGTGAGCGACGCCTTCATCGCCAGCCGCCTGGCCACCAGCCGCCGTGCCTACGGCACCCTGCCGCGCGGCATCGCACTGCCGCCAATCCTCGACCGCTCCAGCCCGGACTGACCGACCGGCAGGCGCGGTAGATTGCGGCGATAGGGATTTTCCATTGCCGATCAGACGCATACGATTGGA # Right flank : CTGACGGGCCTATAGTCACGAGTTTCCTTGGCATACATGAAAACTTTACCTGTCCGCACGTCCAGTATTCCGCCATGGCGCGGCAAGCCGTTAGGCTGCGATATCAAATGGCTACCTTAGGTCTTGCCAGCAAACGGGTGAGACACGCTTTCGGGGAGATAGAAAGTGACGGTCCCATCTTTCTTTGCTTATTGGGGAAAGGCATCCGCGCAGGGTGAGAGTGGCGAGCGCTTTCACCTTTTGCCTTTTCATTCCCTTGATGTGGCGGCCTGCGGCGAGACTCTGATTAAGCTGCCACATTTTTCCCTGCAGCCTTTGGCTCGTGAGCTGGGCTGGCCGCTGAGCCAGGTCGAATCGCTGTTCGTGCTGTTCCTGGCACTGCATGACCTGGGTAAGTTCGCCCGATCCTTCCAGGGGCTGGTTACCGGCCTTTCCCCCGATTTAGTTCCGGCAGACCGTGACAAGCCCTATACGAAGCGACACGACACCCTAGGCTGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //