Array 1 144049-144326 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFTJ01000005.1 Bergeyella zoohelcum strain NCTC11661, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 144049 47 100.0 30 ............................................... GCTGTGTTAATAGGTAGAAAATCATAACCT 144126 47 100.0 30 ............................................... GTTTTATCGCTTGATATACAAGACGAAGAG 144203 47 100.0 30 ............................................... CTGCACGCCTTTGGTTAGTAACTTCAATCT 144280 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 100.0 30 GTTGTAACTCATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ACAAATGCTATACGGGCGAAAAAAGACAAATTTCTTATCCTAAAATGTTATGAATTCCGAACGATTTAACGCTTATAGAATTATGTGGGTAATGGTTTTATACGATTTGCCAACCGAGACCAAGGCAATGCAAAAAGCAGCCAATCTCTTTCGAAAACGCTTGGAAGATGATGGATTTTCTTTATTTCAGTTTTCTATCTATTTGAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTGCATAAAAAACGAGTAAAAATGATGCTTCCCAAATACGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTCCATTCTAAAGTACGCGAAGATCCGCCACCTACTTACCAGCAGCTCGAGTTATTTTAGAAATAGAATGAAAAAAATGGATTTACTCAGCCCGATTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAACAAAAATAATCCTCTGACAGACAGAGGATTATTTTTTGAG # Right flank : CTATTGACGCAATGACAAGTAAGGATGTGGGGTTGTAACCACCGAAAAAGGCTTTACCATATATTGATATACCTAAAGCATTTTTAAACAATGTGGGGGAAACGGGTGAGATATTTACAAAGGAAAACAGCTATTTTAAAAATACGCCAAAAAAAATCCTCTCGGACTTGGATTATTATAAAGATGGTAATATTCTTATTTCTACAAAAGCCAAGAAATTTACCACTTCTGAAAATGAAAAACCAAGAGTAGAGCGGGAGTATGAGAATAGAATTATTACTGCAAAGGCTCTGCAGGAATATTTTAAAAAGGAAACAAAAGTGCTTCCCGAGATAAAACCAAGCCACTGGGCGTATGATTATCATTTTGAGGGAGTAAAAGAGTATGGCAAAGTACCTGATTTTAAAATAGGTGATGATTTCTGGGAAATGGAAAGCTATGATAACAAGTATAGGAAAAAGAAACTTTGGCATATGATAAAAGAGGGAGCGAAGCAGGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTCATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 92709-91257 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFTJ01000002.1 Bergeyella zoohelcum strain NCTC11661, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 92708 29 100.0 35 ............................. TACAAAAAATTAATTAACTTCTCTGATTGGTCTTT 92644 29 100.0 35 ............................. TCTTCATCATAGTAATATCTAGCTGCAGGTATAGT 92580 29 100.0 36 ............................. CTCACTAGGTTTGTAAGTCTCAGGGTATTGATGATA 92515 29 100.0 36 ............................. GTAGTTGTAGGATCAATATATAGCGATTGTGCTGCT 92450 29 100.0 36 ............................. TACTTCCCCACAGTCTTCGCATTTATAATTTTCCAT 92385 29 100.0 36 ............................. GGGAATAAATCCCAAATTAGTTCAACACCTAACACA 92320 29 96.6 35 ........T.................... TCTTTCAATCCAAAAAAGATTAGAGGCTTTTTTAA 92256 29 100.0 35 ............................. CTCTCTTAGTACTATTCATTATACTATTCCATTCA 92192 29 100.0 36 ............................. TTTATTTAAGATTTGATTTTTCGCCCCACTTCTTAA 92127 29 100.0 36 ............................. CAAGTAAGATGGCATGTTTTCAATCTGTTCAAGAAT 92062 29 100.0 35 ............................. TCTACTTCTATAATGGTATAATTGAAATTCTTATC 91998 29 100.0 35 ............................. TTTTCTAAGAGTTCCCGTTGTTTTTGTTGGTTATA 91934 29 100.0 36 ............................. TAATCCGCCTCCTTTTGCTCCATTCTTTGTAGGAAT 91869 29 100.0 36 ............................. TTAGCAACTTGTAAAGGTTTAAACTCATTTCAAACA 91804 29 96.6 36 .........A................... AAATCATCAAATAACATTTGATGTTTGAGTTTAATT 91739 29 100.0 35 ............................. TCATCTGCAAACTTCCGAGCCTTGTAGATATTGAA 91675 29 100.0 36 ............................. TCCATAGCCGCTACACTATCATTGCCCATTAGCTTT 91610 29 96.6 36 T............................ CCCAAAGCGGTGAAATTATCCGCATCTACTATTCCC 91545 29 100.0 36 ............................. TTCTTTTACTTTCTTCTATGAGTTTCATTTTTTTTC 91480 29 100.0 36 ............................. CGGGGTCAGTAGTATATTCATCTATCTTGTAGAGTA 91415 29 100.0 36 ............................. CCATAACCGTCTGCCTTCACTTGGTGGTTGGACTTA 91350 29 100.0 36 ............................. TTAGATAGAGACTTTAAGAGCTTCTTTGCGGACTCA 91285 29 82.8 0 ........................CTGTT | ========== ====== ====== ====== ============================= ==================================== ================== 23 29 98.8 36 ATTCTAATCGCACCATAAGGAATTGAAAC # Left flank : ATATTTCATCTTTTAATTTAATGCTTATGCACATCATATTAGTTTATGACATTAGTGGCAATAAATCTGTAAAAATGCTTAAGCTATGCCGCAGGTATCTGAATTGGGTTCAGAACAGTGTATTTGAAGGAGAGATTACAGAAGCCAAACTGAATCAGTTAATTGCACAGATCCATAGAATCATTAATAAAGAGTTAGACTGTGTCATTATTTATAGTTCCCGCCATTCCAGCTGGGCGGAACGGAAAGTACTGGGCATAGAACAGAATCCCATTAAGAATATTTTGTGATTGTCGTCTATCTATTGTAAATTTGTAGGATAAAGATGTTCTTTGACATTCCGAAAAACATAACACACGCACAGCCAATGAGATAAAACATCGTCTATCTCCTTAGTTTTTAAAGTAAAATAAGACCGACGATTTTTTTAAAAAAAAATAGACTCCAAAAATCACGAAAACATTAGGGTTTTCAGTCTTTTTTACCTACTTTTGTAACCT # Right flank : CTTTCGGAGTGGGTTCGGGAGGAAAAATAGAACAATTAAAAAACGGTGATTAAAATCAAATCTCGAACTACCCCAAAAAAAATCAAATGCTAAATGATGGAGGGCGAATAGTGGATGGCAATTAGCGAATAACGAGGAGTAAAACGATTCAAAACACGAAAACATTAAACTCCTATTATTCCCCAATTAATGCATGAAGTTATTAGTGGACTAGATTCATTCCATGAAAAAAAAGCCATCGTACTAAAATGTTTAGTACGATGGCTTTTTTTACGGGATATACAGGTTATTTCTTAGGTTTCCATTGGCTAAAGAAGTGTGCTACTTTATCTACATCGTAGCTTTTATCAGCCTCTAAGCTACCACTTTCCTGAATATGGAGTAGCTTCCCTGCAGCATCTATAACGATGAACACTGGATAACCATGTTTTTTTCCTGGGTCTCCATATTTGGCAAATACCGCTTCGTTTTTATTTTCTTTGGAATAATTCAGATGATAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAATCGCACCATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //