Array 1 4687-1235 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFSV01000040.1 Vibrio cholerae O1 str. Amazonia Contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4686 28 100.0 32 ............................ TTAACCAGCAATTAAAGCAGGTTCCACGCAAT 4626 28 100.0 32 ............................ TGACTATAAACTTTGGACGGGTCGCCACTCTC 4566 28 100.0 32 ............................ TTATCCAAGGGATAAAAAAATGCAAAACTTTA 4506 28 100.0 33 ............................ ATTACTTTCAAAAATAGGGTATGCGAAAAATGC 4445 28 100.0 32 ............................ TCCCACTCTGAAACCATTTTATTGAAGTGCTC 4385 28 100.0 32 ............................ TAAAAATAGAGCAGCAAAAATAAACCAAACAA 4325 28 100.0 32 ............................ TTTCACAAAAAGCAAAGCAATATGGAAATCAA 4265 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 4205 28 100.0 32 ............................ TATTAACTTTATGAGTCAATGGGGATAATCTG 4145 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 4085 28 96.4 32 ...................A........ AAATGCGATAACCCAGAAAGTTAATGCCTTGA 4025 28 100.0 32 ............................ TACATGGCATTCATGAGGGACGGCAAGCTGAT 3965 28 100.0 32 ............................ TGTCTGCAAATTATCTTTTGCAAGCTGCAGGC 3905 28 100.0 32 ............................ TATTAAATATCGAGCGCATCAATGATGATATG 3845 28 100.0 32 ............................ TCTTTTTGAGAATTTTTCTTATTTAACTCTTC 3785 28 100.0 32 ............................ TTGAATCGAATGTTCATTTATTGCACAAATCG 3725 28 100.0 32 ............................ TGTTACATCGAGCACTGGTAAACTTTTGGCAA 3665 28 100.0 32 ............................ TTATCCAAGCATACGGTAGACTGCCTGAGTAA 3605 28 100.0 32 ............................ TAAAAACGCGGTCGCCATGGAATCCCCAAGCA 3545 28 100.0 32 ............................ GTTGTACTCAGTTTCATCGTCCGTAAACATGT 3485 28 100.0 32 ............................ AAGCACATAGCCAGACATCATCGAACCACTGG 3425 28 100.0 32 ............................ TTTTTCATAGGCTCTTGTTGAGTTTCCACTCA 3365 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 3305 28 100.0 32 ............................ TTTTCTAACGAGTCCATGCGATAAGCAAAAAA 3245 28 100.0 32 ............................ TCAAGGGGAATAACAACATGTTGATGGTCATT 3185 28 100.0 32 ............................ TAGCATTAAGTGAATTGTTGGAGTGCCCACGC 3125 28 96.4 32 ...........T................ TTATGTATGCCCTGCAGGGCTGAAAACTGACG 3065 28 96.4 33 ...........T................ AGATAAGCGTTGTTTAAGCGGCTGCGGAACACG 3004 28 96.4 32 ...........T................ ACGCTATTTGGCGAATTCGTCCACGTAAAAAC 2944 28 96.4 32 ...........T................ TTCGCTTAGTTGAGTTTGAGCAAGATAAACAA 2884 28 96.4 32 ...........T................ ATTTCCTTGATGTGCTTGATTTGATCAGCTTT 2824 28 96.4 32 ...........T................ GTTAAGCGTGGGTTATACATTGTTAATGGTCG 2764 28 96.4 32 ...........T................ ATAATACAACAAAACTCGAGTAACTCTAGCAA 2704 28 96.4 32 ...........T................ ACCAGTGGTGAGCTGAAGCATTGAAGTACCTT 2644 28 96.4 32 ...........T................ GCTTCGATCAAGTCAAAATCGAACTGGTTTGT 2584 28 96.4 32 ...........T................ AGCTCATCTAACTCTTGCCAAACTTCTGGCTT 2524 28 96.4 32 ...........T................ ATTTGAGCGCCGAGTTTAAACGATAGTTCATA 2464 28 100.0 32 ............................ GTTGAAATACCATGCTTTTTTTGATCTCGAAT 2404 28 100.0 32 ............................ TTGCTGGCTGGTTATGTGATGCCAAACATGTT 2344 28 100.0 32 ............................ TTCAAATAGAGGGCTCGGGCGGCTTGTCGGAT 2284 28 100.0 32 ............................ TTAGTTTGGGATTGTCGTGTGGTGTGTCCGGT 2224 28 92.9 33 ........................AG.. AAAACGAAAGCCGTAGCCATACAGTTAAAGTAA 2163 28 100.0 32 ............................ ATTCGAACTGCGGCATTCAGCATGGTTTTACC 2103 28 100.0 32 ............................ AGTAACAAAAAACTCGCCAAACGCATGGCGGA 2043 28 100.0 32 ............................ TCTACGTTTACTTCAAAGCAGTATCTTGCTTT 1983 28 100.0 32 ............................ TGTAAATAATATTTCTGCCAAAGTGTAGAGCG 1923 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 1863 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 1803 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 1743 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 1683 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 1623 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 1562 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 1502 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 1442 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 1382 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 1322 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 1262 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 58 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : GGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGAACTTTTCAAGGTAATCACGATCTGATCATGAAGTTAAAAATATGAGAAACTCGTACATGATTATCATTGAGCAGCTAAAAAAAAGTGAAAGATACCCGTTCGCATATCAACCAAGTGTATCCTGTTATGGAAGTGGCTTTCTTGGTCATAACCGCCATGATTTGTGGTCAAAATAAGTGGACTGATATTAAGGATTTCGGCGAAGGAAATATCGAGTGGTTGCGTGAGTATCTCCCCTACGACAATGGTCTCCCCACTCGGCATAATATTGCCGCGATAATGAGAACTGTTGTACCAGAGACGCTCTTGGAAGCGATGGTAGGCTGGGTCAATTTGCACAGAGAAAAGCATGCTCAGCCCATAATCAGCGTTGATGGGAAGGTTCTAAAAGGAGCGAAAGCAAGCAAACAAGAACACCCTCTCTATATGGTTTCGGCATTTGACGTAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //