Array 1 4455-3266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBQ01000019.1 Streptomyces californicus strain NRRL ISP-5083 contig19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4454 29 100.0 32 ............................. GCGCCGGCGGTTTCGGTGGACCTCTCTGCCCT 4393 29 100.0 32 ............................. GACGCCAAACGCAGCGCCTCATGGACGGCGTT 4332 29 100.0 32 ............................. AGCCAGCCGACCACGGTCACCGGGATCGAGTG 4271 29 100.0 32 ............................. TCGTGAGACCGCCCCACGCGCGCGCGGAGGGT 4210 29 96.6 32 ............................T CAGTCAAAAACCTTCGCGAAAAGGACATTCAG 4149 29 100.0 32 ............................. CACACCGCCAAGGCCCGGGAGGCCCGCAACCA 4088 29 100.0 32 ............................. ATGTTCGGTTCCGGATGGGACACCCTCAAGGG 4027 29 100.0 32 ............................. TCCCGGCGCAGGGCTTCGACGACCAGGGCAGT 3966 29 100.0 33 ............................. GAGCTCGCGCGTATCCAGCATCAGCGCGCAAGC 3904 29 96.6 32 ............................G GGAGATTGGGCCCCGCCATGTCAGTCCCAGTT 3843 29 100.0 32 ............................. ACGTCTCGGGTCATGAAGTCGTACTGGCCCTT 3782 29 100.0 32 ............................. AGGCCCCGGTGCGCCGCGCGTTGCCGGGCCTT 3721 29 96.6 32 ...C......................... GACTACTGGTGCAAGGGCCTGTCCTTCGGCCC 3660 29 96.6 32 ...C......................... CGCACCCTGCGGCAGGGCCAGCGAACCGACCT 3599 29 96.6 32 ...T......................... GGGGCGGAGCCGTAGCCGTAGCCGGACGCGGC 3538 29 93.1 32 ...C..........G.............. GTGGCGGCCTCGCGCTCGTCGGCGGTGGCGCG 3477 29 89.7 32 ...C.............T...C....... CGCACTTCGAGCGCTGGAGATCCCAAGTCGTA 3416 29 89.7 32 ...C........T............C... GCCGCCTGCGCACTGGCCGAGGGCACGACGGT 3355 29 93.1 32 ...C.................A....... ATTACGTCCGGTGGACTCGGAAACCGGCCCCG 3294 29 93.1 0 ...C................A........ | ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.1 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ACATCGCCGCCGGTGAACAGGTACGGTGGCTGCCCCGCCGTCAGGCATCCGACATCCCTCTGCCCGGTAACGACTTCTGGCTGTTCGATGACCGTCTCGTCCGGTGGAACCACTTCGGCGGCGACGGCTCCTCGCAAGGGCCGGAGCACACTACCGACTCGACGGCCGTGAAGCTGTGCGGGAAAGCATTCGAAGCCGTGTGGGATCGCGGCATACCGCACGACCAGTACGACATCCGCTGACAACCGCCCCCGGACGCCCCCCCTTCTCAGCGCCAACGAGAGCGCCGCCGACGCCTGGAAGGCTCCGACCTAGGATCCGGTCGCGGCTGCACCTCTTCACAGAAGCCGCAAGAAGCCCTCCCCCGCAATGAGGGACGTGCAGAATAGCTTCTGTCGAGCATCAAGCAGGCCGATTCACCCCGAAGGTCCCGCATGACCGTTTCTCAAGAAGTTAGCAAAAACGGGCCTACGGCCACCTAAACCCGCAGGTCACGAACA # Right flank : CACGGGCTCACCCCGCCCGGCATCCTCGCGGCGGTGCTACCTGCGCGCGGGGGCGACCCCTCCACACCCCCGCCCGACTCCACCCAGCCGGGCGCCCCTCCCCCCCATCGCGATACGTACACCCACGCCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAACCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGCGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAACGGGACCTGCTCAAAGAACTGGGCCGCAGGCACCGTCAGCGCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6027-5693 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBQ01000019.1 Streptomyces californicus strain NRRL ISP-5083 contig19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6026 29 100.0 32 ............................. GTCCTCCACGACCTCTTCCCAGGTAGTGCCGA 5965 29 100.0 32 ............................. CCGCCGCTCGTACGGGCCATCGCTGCCGCGTT 5904 29 100.0 32 ............................. TTCGTCTCGAACTGCTGGCCCAGGTCCGAGGT 5843 29 96.6 32 .C........................... CTCGCGAAGACCCTCGCCCAGTCCTGGGGCAA 5782 29 96.6 32 ...........A................. GCTGCGTGGCTCGCCTACCGTCTGGGCTCCGA 5721 29 86.2 0 .............A..T........G..T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCGAGCGCGGGCATGCGTGATGGCTCCTGTGGCGGACACGGGGACGGCCGACGACCGGGGAGGGGAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGGGCCCCCGGCTGCCGGGTGGCCAAAGTTGACGCGTCGAAGTCTCGCCGCGCTCCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGACCCTGGCGACCCGGGGGCGACGGGCTGCCGCCAACAGTCCGGTGTGCGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCGGGGGTGCTGAACTCCGCCCACCTGGCGACCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAAAACGACCCCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : ACCCATCCCGATGCGATGCCGTGGTGAGTCAAATGGCCTCGGGCGCGGGTGATCCGTCCTTCAGTCAGGCCCGCCCTACACCCACGCCCCCCATGTGCAGATCTATGCACACAAGCACTCTTACGGGAACAAGCGCTGGAACGCCCTCTTGAACAGCGCTACTTCGTGCCAGATCACGATGCAGACAACTACAAACCCCCGCAGCCGGAGGAAGCCCATGTCGTTACAGTTCATTGGGATCGACCCGCAGACGGGCGATGACGAGAGCCCGACCGCGTGGATCGACCGGGAGAACGGGGAGCTCGTTTTCCAGGGGTGGAAGCCCGGCCCCGAACTCGAAGCCGAATGTGCCGCCCTCGAACTGTCTGGGCACGCCGTAGGAATCCCCGAGACCGAAGCCGAGGTCCGCATCCCCGCCAGGATGGTGGACATGATCAGGGAGGCATGCGATGCCCTCGAACGCGCCGACGGCGTTCGCTGACCTGCTGGCCAAGTGCGAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1305-2434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBQ01000029.1 Streptomyces californicus strain NRRL ISP-5083 contig29.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1305 30 96.7 31 .G............................ GGTCCGCCAGGAACCCGTCCGTGGACACGTA 1366 30 96.7 31 .............................C GAGGAGATCCCGATGGGAAAGACCGTCTGCT 1427 30 96.7 31 .............................G CTCGCAGGTCGTCATCCTGGTACCAGTCGCC 1488 30 100.0 31 .............................. TGAGCCGGAAGTCCGACTCGGAGTAGGCGAG 1549 30 96.7 31 .............................C GAGCCAAGGTAGTGCAGAGCTTTTACTCGGA 1610 30 100.0 31 .............................. CGCACGGCGGCTACTACTTCGGCCGCCCCAA 1671 30 93.3 31 ............................AC GGCGGGACCGATCGTTCCCCCCAGCGCGTCG 1732 30 100.0 31 .............................. GCCTGTCCAGGCGGTCCGCCAAAGCCACGGA 1793 30 100.0 31 .............................. TGTCTACACCGGAGAGGTGTGTCTGTTTTAC 1854 30 96.7 31 .............................G CCGCATCCAGGCACCCCCGGGCACCGTCTTC 1915 30 96.7 31 .............................C CAGCGGACGTGATCCGCGACGGAGTTGGTGG 1976 30 96.7 31 .............................T GCACGGCGCAACAACACTCGCCGAACACCTG 2037 30 96.7 31 .............................G GTGACCGGATGACCGACGACATGATTGACCG 2098 30 93.3 31 ............................AC CGGGGCAAAGCGAAAGGCAGGCGATCCGGTG 2159 30 93.3 31 ...........C.................C GCACCCCCAGCATCGTCTCCATGTGCGCGTC 2220 30 100.0 31 .............................. TCAGCGGCAGGGACTCGGGCAGGGTGTACGT 2281 30 93.3 32 ............................GT GTGGGCGCAGCCCCACTATCTGTGCGTAATGA 2343 30 93.3 31 .........................C...G GCGGCAGTGATCGGCGTACCTGTACGCCGCT 2404 30 73.3 0 ...........CGGT......C....TT.G | T [2414] ========== ====== ====== ====== ============================== ================================ ================== 19 30 95.4 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CCGACAAAATCCCACCCCACATCCCCGGAGAGGCCGAAACCCGATCACCGAGCACCGCCAAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCGGAAGCCCTCCCTGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGGCAGAACCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCTGTGGTACGCAGAATGGCACCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGGG # Right flank : GCGGGTGTTCGCGGTGCCGCTTCGGTCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGGCACCGGGCCGCCCCGCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCTCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81952-81797 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBQ01000034.1 Streptomyces californicus strain NRRL ISP-5083 contig34.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 81951 33 100.0 28 ................................. GCGCACGGGCATAGCTCGCTCTCGGGGA 81890 33 84.8 28 ..............G..............TTTC CGGCTGGGCTCGCCCCGGGCCGCAAGGC 81829 33 87.9 0 .............................GACG | ========== ====== ====== ====== ================================= ============================ ================== 3 33 90.9 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGAA # Left flank : ACCAAAGCCGACGAACCTGCCAAGCCGCCCCTGCGCCAGCGCATCGCCACCCGCTGGGACAACCTCAACCCCACCACGAAGGCCATCATGGTCACCGGCCTTACCGTCGTGGCCGCAGGAGTCGTCCGTGCCGTCGCAGGTGGGCGTGCACCCGCAGACGAGCCCGCCCACCCGATCGAGACCGAAGAGAACACCAGGCAAGGGCGCTACGACCACCTTGGCCGCCACGTCCAGTTGAACAACCACGGCTACTACTACATGTGCCAGCACTACGCATGCTCCAAGAAGGTCAACTGGACCATCCCGGGTCACGACTGTTGCGGGCGGTGCACCCCCGGCCGGAACTGCCTCAAGGAAGCGCAACGCGACTACGCCGGCCCTGGCACTCATGCGCACGAGTTCTGGGAAACGTTCATGAACCCCGGTGTTTGCGCCACGTGCGGCGAACTGCCCGAGGTGCACCCGAAGCCCTAGCAGTCCAGCCTGCTCGCCCCCTGCCC # Right flank : CACCGATGAACCCGGAGCAGCGCTCCAAGTCCGGGCGCGACCGCCGAGGTGATGCTGGTCAGCCTGTCCCGTTCGCCTGAGAGGCGTTGCAAGGCTACTCCGGGAGTGCCATGTCGAGGCCAGGTCGGTTGCTGGGCGGCCATCTTGGCGCATAGCTCCTTGAGGGCTTGGCGGCCGTCGGCGAAGCGCTCCTCAGGTTCCCCAATCGTTCGCGGAGCTACCGTTCGGCGGCGGCCTGGATCATCGGGTTGGTGTGCTGCTGCCTGGTCCAGGTGGCGCGGTGGGCGGCGATGACTTCGCGGTAGCCCTCCGGCGGATCCGCACGCCGCATCGGCGCTGCGGGTGCGGTCAAAGTGGGGACGGTTCGGCGGCCGCCGTGGCGGGGGCGGCGACCTTTACAGGTGCGGGCGCCAGGACGTTCGCGGCGGGCACCTTCTCTTTGGCCGCCGCAATCAGCTTCGGCGCGCTCCAGCGCAGCTGCGTTGCGGCTCCCGGAAGGC # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 411723-411568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBQ01000005.1 Streptomyces californicus strain NRRL ISP-5083 contig5.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 411722 33 100.0 28 ................................. GGACGGCGCGGCCTCGGATCCCTCCGTT 411661 33 100.0 28 ................................. CCCGGGCGCACTCCTCGAGCGCGCTGAA 411600 33 90.9 0 .............................C.TC | ========== ====== ====== ====== ================================= ============================ ================== 3 33 97.0 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT # Left flank : TCGCTGCCGCTGGAGGACCGGGTGCTGCTGGTGGCCGCGTACTGACCCACCAACCTCACCCTGCGTCAACTCGCCGCGCTCTTCGGCGTCTCGAAGTCGGCGGCCGACCGGATCGTCGCCCACCTCGGGCCGGCTCTCGCCCTCCAGCCCCGGCGGCGGTTCCGCAAGGAGGCCGTGCTCATCGTGGACGGCACCGCGGGTAGGGAGGCAACGCCGGATCCAGCCCCCGGGCCACCACTCGAACCTGATACTGCAACGGAAGCGAAACCGCCACCCATCACACACAAGCACCCAGCACTGACATTGAATATCGCTACTGGCGTACCGACGGTCGTTTCTCGATCAGTAACGGTGGATCAGTAACGGTGCGCGGTGCTCGCCTTGGCGACCTGGCAAGCTGCAGCTGGACAGAGTGACGGCATGCGTCTGACTGAGCGCCTCACCCCCTCAAGAATGGCAAAGAAAATGCAAAGCCCTTCTTAAGGCGCAGTTCAGGAAGT # Right flank : TCAGACTGTGTTGTTCGGCCTTGACGGCGCCCTCCACAGCGCAGGGTCACACGCCCAGGCACCTCACCGTACGGACCCTAACCGAGGTCTGGCATTGAACCTTTGCCAAGCTGGCGGTGTTGACCGCGAGCTGGACACGCCTGCGCAATGGCGAAGCTCCTGACAGACGGATCTCGACCAAGATCACCTGTGCCCGCCCGGAGCTTCGCGTGCTCGTACACCCATCCTCGGTCGATGTGCCCCATCGCGGTGGTACGCCGCCGTCCCAGCCTTCCCCGCTGAGAAGTTCCAGCACCCCTTTCCCCGATCTCACCCTCAAGGCGCCCCCACCCGTTCGACCACTACCTCCACGCTCGTATCCGTGCTGGCATGACATGAAGGGCCGCCTTCGTCCTCCAACCTCACCCCGAGCCTCGCACCGCGGCAAGACCCTGATCCAGCTGCACCCGAGCGAGCCGACCAAGAACGAAGAAGAAGCCCACCGGCGAACCGGTGAGGCT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6892-6486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBQ01000048.1 Streptomyces californicus strain NRRL ISP-5083 contig48.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 6891 30 100.0 31 .............................. CAACTCTCTCCTCCTCCGCCCACTGCCCCGC 6830 30 96.7 31 .............................G CATGATGATCGGCTCGTGGGCCTCCGCGACG 6769 30 96.7 31 .............................A CTCTGAACCCGCGCTGCTCCGCGAACTCCCG 6708 30 100.0 41 .............................. GCAGGACGCGATCTGGCAGAAGGCCCTCGACGGCGACCTCG 6637 30 93.3 31 .........A...................C TGCGGGTGTTCCTCGACAGCCGGGACGCGGG 6576 30 93.3 31 ...C.........................G GGGTTGAGGTCGAGGGCCTGGAGGAACTGGA 6515 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ========================================= ================== 7 30 96.7 33 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : ACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACTCACGGCGGCGACCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGTATAACCCCCGCCCCAAGAACCCCCGTTAGGCAGAACAGACACACCGCATCCCCAGGACCAGCCCCACAGACAGAGAGCAGAACCGCAGCCCTCCCGCCGAAGCCAGGCCCAGATGAGACCGGCGGCGGGCAGAATGAGCATCAGCCGAACCACACGTGACCACTTTGCAACGGAAGGCGAGATATGCTGGTTTCCCAAGAAGTGAGTAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGGCACGAAGGTGGTCCCCGCTCACGCAGG # Right flank : CGAGCCACCCGACGCACCTGCCTCCGGCCCGGGAGCGTCCAGGTGCGGCCTCGCCCGAGGCCGCCACCCCCGACCCCGGAGCACCGCCCCTACGCTTCCGACGTCCCCGACACCGCCACCCGGAACCCCACCCCGATCGCCGCCAGGTCCTCCTCGTACGCGCCGTGGCGGCGGGCGCAGCGGGCCAGGTCGCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGGGGTCGAAGGCCCAGTCCTCGGTCTCCGGGACCTCGGCGGGCGCGCCCGGATACGGAGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAACGAGCCGACCGGCGTCGTCGTGCCGACGCCCAGGTCCACCAGGTTGGCCAGGCCCGTGCGGTACTCCTCGCCCCACGGGAACTCCCTGCCGTCGTCGCCGCGTGCGGCACGTTCCCATTCGTCCTCGGTGGGCAGGCG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4528-5044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBQ01000039.1 Streptomyces californicus strain NRRL ISP-5083 contig39.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 4528 30 96.7 31 .............................C CGCGGGCCTCCGCGTCCACGGCGAGAGTGAG 4589 30 96.7 31 ...A.......................... CCATCAGCGGCACCCACGCGGGGCGCTGAGT 4650 30 93.3 31 ...A.........................T CGCGGCGGTCATCGGGTTGCTGGGTCATGCG 4711 30 96.7 31 .............................A GCGGCTTCGCGCTCGAATTGGGGGCGGAGGT 4772 30 100.0 31 .............................. GCACCACACCGCTGGCCGCTCTGGCCGCCGG 4833 30 100.0 90 .............................. CGTACGCCTGGCTCCAGCTGGAGGGCTACGTGTGGCCCCCGCGCGCGGGGGTGGCCCTCAGGCGAACCGGAATTCGGTCTGCCCCGGCTT 4953 30 90.0 32 ...........A.............C...T CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 5015 30 80.0 0 ......................CCAG.GT. | ========== ====== ====== ====== ============================== ========================================================================================== ================== 8 30 94.2 40 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCAGCGCCTCCAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGGCCTCTGAAAGTCAACCGACGACGGTCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGAAGACCGCCATACCGGCCCCGAAGGAATAGCCGCACCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCAAGATATGTCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGACACCTAACCCGCAGGTCACGAACA # Right flank : GAATGGTCGCGCGGCCCGCACCGTAGCCCGGACAAGAAACAGCCCTACAGGTCAGGACGTTAGGTCGTCTCCCTCAACGTCGCTTCCCCCTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTAATGTGGAAGCTGTGGCTGCCGGGGTGGCCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACGCGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCACGGGCGGCTCCGTCTCCGCAGTCCACAGACGGGCGGCGTGCTCGGTGGTCTCGCCGTGCTCGCCCAACTCGCACAGCACGTACGGCTTTTCTTCGAGGAGGTCTTCGGCGTCGTCCGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGGGCGGGAGGTTGGTGATGGCGGTGCATTGCA # Questionable array : NO Score: 4.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.69, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8538-9627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBQ01000039.1 Streptomyces californicus strain NRRL ISP-5083 contig39.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================== ================== 8538 30 96.7 31 ..............T............... CGTCTGCTTCGACCCGTCCGGGTGGATCGGT 8599 30 93.3 31 ..............T..............A AGGCCGGCGGCGCAGTCGGCGGAACGGAGTA 8660 30 93.3 31 ..............T..............C CGACGCCGCCAGCACCCTCCTGGAGCGCACC 8721 30 96.7 31 .............................A TGCTGTTGAGCTGGTCGCGGATCTCCTGGTT 8782 30 96.7 31 .............................C GGCCGCCCGTCGTGGCGCCGCTGGTGCGGCG 8843 30 100.0 31 .............................. CGTCCGAGCCCAGCAGGGCGAGGAGGTCGTG 8904 30 100.0 31 .............................. TCCGCGTCAAGGCGTCAACTTGGTTCGCGGT 8965 30 93.3 31 ............................TC TGTCCCCCTTCCCTGTCCTCAGGCCCCGTAC 9026 30 96.7 31 .............................G CGGCGGCGTTCGTGAAGTCGAGCCACCCGAG 9087 30 100.0 32 .............................. CTCCGTCTCCACCAGCCTGCTGGAGAAGTTTG 9149 30 96.7 31 ............................A. CTCTGGAGTCCGGCATCTCAACCGTCATGAT 9210 30 100.0 31 .............................. GGCCCCAAAGGTCTGGTGCACGCAGAAACTT 9271 30 96.7 53 .............................C GCGCACGCGGGGGTGGTCCCCCCCCATCACAGCCGGTCGCCGGGGCTCAACCT 9354 30 96.7 31 .............................G GAGTCGGCACTGTCCGCAGTGCTCACCCTCG 9415 30 90.0 31 .......T.................G...G TGCCCGTGGGCCACTGCTCATCGAGCAGCGC 9476 30 93.3 31 .........A...................A GGCGCTCCTGCGTCCACCCGGTGACCTTCGG 9537 30 96.7 31 .............................G TGTACGTGGCGTCGCCGGCGCGGTCGAGGCT 9598 30 76.7 0 .G....................CCCAG.G. | ========== ====== ====== ====== ============================== ===================================================== ================== 18 30 95.2 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGATATATGCCGGTTTCTCAACAAGTTAGTAAAAACCACCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : TGAATGGTCGCGCAGCTCGCACCGTAGCCCGGACGAGGAACAGCCCACCGGGTCAGGACGTTTGGCCGTCGCCCTCGACGTCGTCTTCCCCTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGCGATGTGAAAGCTGTGACTGCCGGGGTGGTCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGCGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACGCGATGGCCACCCGCACTCGTCGCCCACAGGAACCACAGACTCACGGGCGGTTCGGTCTCCGCGGTCCACAGCCGCGCCGCGTGCTCGGCGGTCTCGTCATGCTCGCCCAACTCGCATAAGACATAGGGCTTGTCGTCGAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGTGCGGGAGGTTGGTGATGGCGGTGCATTGC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //