Array 1 292365-296237 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134514.1 Pasteurella multocida subsp. septica strain NCTC11619 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 292365 28 100.0 32 ............................ TATAAAAAAATGGCTATCAAATATCACCCTGA 292425 28 100.0 33 ............................ CATCAAAGCAGCCCCAAGAATCACACCAAACAC 292486 28 100.0 32 ............................ TATTTTTGTGGTAACTGCACAAATGGCATGAT 292546 28 100.0 33 ............................ TGTATCTAAATCATGTTGTTCGTAGGTGTACAT 292607 28 100.0 33 ............................ CTTTATTTTATCGGCTTGTAGTTCATTACCGCC 292668 28 100.0 32 ............................ TCATAGCTTAGTGATTGCCACAAGTCGTTTTG 292728 28 100.0 32 ............................ TATCGCGCAAAAGATAGCCCTCCGGCGAGATC 292788 28 100.0 32 ............................ CATGCGCGTCTTATGAAAGCGTGCAAGGCACG 292848 28 100.0 32 ............................ TGAAATTACCAAACACCTAAACAGCAGAGTAA 292908 28 100.0 32 ............................ TAAAATCACCAAACAAAGCTTTGTTTATAATC 292968 28 100.0 32 ............................ ACAACATAAAATTGTGGGTATCATTAAACATT 293028 28 100.0 32 ............................ GCAAGGAACACAAACTCACAGACGTTTTATGA 293088 28 100.0 32 ............................ TTGCGGAACCTCTTTGCGTGACATTTTGTCAC 293148 28 100.0 32 ............................ TCCGGCGAGATCGGGGTGTACTCGATCTCTAC 293208 28 100.0 32 ............................ ATAATGATAAGTGTAGGAATGAGTATTTATTC 293268 28 100.0 31 ............................ ATATTATGTTAAATTGAAATTTCCGTATGTT 293327 28 100.0 32 ............................ TTTTTGACGATGTTTGGCACCCCATACGTTGC 293387 28 100.0 32 ............................ CCAACCCCTACCCTACCCTAAGTTAACCCATA 293447 28 100.0 32 ............................ CTATTATTTTTATCATTGTAAGTGTGGGGGTG 293507 28 100.0 32 ............................ TTATTCTAATAAACAAATCCTTATTCTTAACA 293567 28 100.0 32 ............................ TTATGGACAGATTACGCGCAGAAAACTAAAAG 293627 28 100.0 33 ............................ CTATTTTACGCGTTATTTATGCAAAATACTTGA 293688 28 100.0 32 ............................ ATACCCTACCCTAACTTAACCCATAAAAACCT 293748 28 100.0 32 ............................ TTGTTGATTTCTCAAATCGTTTAGCATCGTAA 293808 28 100.0 32 ............................ TGAAATTTAACAAAAAGAGGTGATTTTTATGA 293868 28 100.0 32 ............................ CGCAAATATTTAATTCGCGCGAGTTATTTAAT 293928 28 100.0 32 ............................ AAAATTTAAAATCAGAATTAATGGAAAATTTA 293988 28 100.0 32 ............................ TTGCACGGTTAAACAGCAGTTGCTTTGTTCTG 294048 28 100.0 32 ............................ TCCAAAAAAAGTCAATCACTAGCAAGACACGG 294108 28 100.0 32 ............................ TTTATTCGAATGCCGTATCTATTCATCTGTAA 294168 28 100.0 32 ............................ TTTTGGGTCCTCTTCGGAGTAATATTCAAAAG 294228 28 100.0 32 ............................ TTCGCGCGAGATCGGGGTGTACTCGATCTCTA 294288 28 100.0 32 ............................ ATTAATGCCAAAAGGAATTTTAGTTGATTTTC 294348 28 100.0 32 ............................ TTGCCACACCAATAACTCTGATATCTTGATTC 294408 28 100.0 32 ............................ TACCCACAATTTTTTATTTTGTGGGTATCATT 294468 28 100.0 32 ............................ ATATTCAAACAAACAAATTCTTATTTTAATTC 294528 28 100.0 32 ............................ TGATATGGATGACAATGTAAAGTTGCTCATCC 294588 28 100.0 32 ............................ TTATTTCACAACCAGTCAACAAACAACTGCAT 294648 28 100.0 32 ............................ TAACACACTTTTTATTGGTGATTGAACCTTAT 294708 28 100.0 32 ............................ TGATGGTTGGTTTACAGGCAAGTCAAATTCTA 294768 28 100.0 32 ............................ TTCATGGTATCGAGCTCCAGCTCATCATTTAA 294828 28 100.0 32 ............................ TCTCCATTCTCTGAAATAATCTTACAATGAAT 294888 28 100.0 32 ............................ AGCAAACATGTACGGATTCACAGACTGTCCGT 294948 28 100.0 32 ............................ ATCTTTAATCGCATCATCAAATGGTATTGTGT 295008 28 100.0 32 ............................ TTGCGCGACATTCTATCGCGCAAAAGATACCC 295068 28 100.0 32 ............................ TTTGTTTAAAAGAAAGCCGCACTACAACGCAC 295128 28 100.0 32 ............................ TATTATCAACCGTATTTTGAGGGTAAAAAACT 295188 28 100.0 32 ............................ AATTATTATCCACCATTTCAAAGTATGGTGAT 295248 28 100.0 32 ............................ TAACCAAATTCAGCCAGCAAATGTACCCTTGC 295308 28 100.0 32 ............................ ATTCCGCTTTTAGCACCCAGTGCGCCCGCTGA 295368 28 100.0 32 ............................ TATTATCAACCGTATTTTGAGGGTAAAAAACT 295428 28 100.0 33 ............................ TATTTTTTTAATTCAATTTTACCAAATTTTAAT 295489 28 100.0 32 ............................ ACCAAACGCATAAACAAAAAAAAGCTAATCAA 295549 28 100.0 32 ............................ TCTAATATTTAATTCGCGCGAGTTATTTAATT 295609 28 100.0 32 ............................ ATCTAAAAATTATCAATTACTTACTAGCGATG 295669 28 100.0 32 ............................ ACCGACGTAATAATTACCTTCTGTTGTAATAC 295729 28 100.0 32 ............................ TCAACTGGCGATACGGCATCAAACCCTCTTTT 295789 28 100.0 32 ............................ ACGATATTTTTTTAAATTTAATCCGACAATAT 295849 28 100.0 32 ............................ GCTACTATTACTATGTAACAAATAATAATCAT 295909 28 100.0 32 ............................ ATATGTTGCCCACAATTATTTTTGGGTCAATT 295969 28 100.0 32 ............................ ATAACGGAAAAGAGATGCTTGAAAGGGTTCGT 296029 28 100.0 32 ............................ ACTGCCACCCAAAACAGAATAAGGATGTTTAC 296089 28 100.0 33 ............................ TAATAGCAAAAAATCATCAGCAGTTGACAGCAA 296150 28 100.0 32 ............................ ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 296210 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 65 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACAGCAACAATTATTGCGATCTAGCTTATCAGACTATGCTTTAATTAGCGAAGTGAGTAAAACACCGTCGCCTACCGAGCATCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGTCGTACTGAAAAGCGTCTTAAAAGTCAGGGAAGATGGGATGAGTCCATCCGCGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCCAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAAAAGAATGCCGCAATCTTGTGTTGGTATCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCATTTTTAATCTCATTGTTAACCCTTTTTTCTTACTTGAAAAATTTTCAAATAAGATCAAAGGGTTATTAGTATTCCCTAAAAAAGGGTTTTCTTCTCAGATGTTCTTTAACAAATTGAAATATCCAAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTTGAATCGTTAATTATCAACTAGATAGTGTAAATCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCTGTTAAGCAACCTCAGTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGATAACGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGTGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGTGGAGGTGGTACACCATTGTTTAATGGCACTGAAGCCGAGATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 758546-759931 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134514.1 Pasteurella multocida subsp. septica strain NCTC11619 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 758546 37 100.0 34 ..................................... ACAGCAACCGCACCATTGCAACCAACAGTACTAA 758617 37 100.0 32 ..................................... TTTTAAATTTATCATTATTGATTTTATCTTGA 758686 37 100.0 34 ..................................... TTGTTTAACACTTCAAATTGCACTTGCCCATGTT 758757 37 100.0 35 ..................................... ATGCAAGGGAGTAACGGATGAGTAAAAAGAACCGT 758829 37 100.0 32 ..................................... GAAAACAAGTAAAACGTGCGATCGCTTTTACT 758898 37 100.0 33 ..................................... CGTCGTATTGCAACGCGTTGTCAGGCATTAGAA 758968 37 100.0 34 ..................................... TCTCCAAAAGAAGCTGATAGTAATTTTCTTTGGT 759039 37 100.0 34 ..................................... CGTTCAGCACGTCCGCTTTGATAAGAGTAAGAAT 759110 37 100.0 35 ..................................... GAGCGCTTTATCGCCAGTCTTGGTTGTATCAGCTA 759182 37 100.0 33 ..................................... ACTAAATTTTTGTGAAAATTAGCGAACACTACT 759252 37 100.0 36 ..................................... TTCATAAATTTATTAGTTTTGATTTTCATAAATCAC 759325 37 100.0 34 ..................................... TGACTTCTCTCTGTGTACCATCATCGAATGTCAC 759396 37 100.0 36 ..................................... GTCGCATTTTAAAAATCCTTGCGGGTTAGTGACTTC 759469 37 100.0 36 ..................................... TTTTGGCTAGCTGGATGGTTAGGTATGCTGCGATAA 759542 37 100.0 36 ..................................... AATCCGTTTCTTACCATACTCATATCGAACTGAGCG 759615 37 100.0 32 ..................................... TTTTCATAACTAAGTCCTCTTTCTTTAAATTT 759684 37 100.0 33 ..................................... TCAAAATTTGCGCCATTCTCTTCTAAAATATCT 759754 37 100.0 34 ..................................... CTTTAAAGGTCGTATTATCTGGCGCAACTTCTTT 759825 37 100.0 33 ..................................... AATACACGAATCGCGAGTTCTTTGAGTGAAGCG 759895 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 20 37 100.0 34 GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Left flank : CAACAAACATTTTCGCCAAACGCACGGGGGTTTCTTCTAAACTATCATCGCGTAAATCTAACCCAATCAGCTTCATCACTTCACGCATATGTTGTTCAATCCCCGCTCGACGCGTATCTCTGTCTTGTTCTGGGGTAATCATTGGGGTTTCAATCCCCTTACTTAATAATGCATTGCGGACTTTTTCTGCTTCTGGTGAAATCTTGTTCATGTAAAACTCCCGATAAATAATCCGCACATTCTAGCAAACTCTCGCCAAAGTACAAATGAGAATAATTGGTAGAGAGGATGAAAAGTTTTGAGTTAAAACACGTTTTATAAAAAATAGACATAGTATAAAAAATAAACTTGAGGTAAAATAACCAAATTCTTTGGCTGACAGACTAGGTTTAAGTTGATTGTTTTTTGTTCAAATCAAGGGGTAGCTTTCCACATCAATGAAGAAATTGGGAAGCCTACAGATAACATTCTGAATACAAAAGAAAAATCCACCTATTACA # Right flank : CGCCTCTGCATTACTTGTTAATGTTGAGCCTATCAAGCGTGGTGCCCTGTTCTAAAGGGATTGAGATTAATCAATTTAGATACAATTTTTTCTTCCTTTCTGTCGAAAGACATTACCCTGTTCCAAAAGAATTTATTTATGTAGCGTGGGCATACTTGCCCAGCACATAACCCCTACGCTTTCCCATTCGAAAGTACGATCATTTTTCAAAAAGTTTTACAGCTTTATCTCTGCTTATTTCTTATCAGTATAGGCTCAATAAAATGAGATCATCCTGCTTTTTTGGTATAAAATATTGCCCGTTAAACTCAACTAAGGATTCAATTATGTTGCCTCTTGAACAAGCACTGACTCAAATGCTCGCTATGTTGCCAACACCTGATTGTGCGCAAGCCGAACAACTCCCCCTTCAACACGCGGTGAATCGCATTTGTGCTGAGGATATCATTTCCCCGCTTAATGTGCCCTCCTTTGATAACTCGGCGATGGACGGCTATGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 3 844627-846762 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134514.1 Pasteurella multocida subsp. septica strain NCTC11619 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 844627 37 97.3 32 ...................C................. CTGGTATCACAGAAACCATCACAGAACCAAAA 844696 37 97.3 31 ...................C................. ATAATTGCATGATAGCTTTCTTTACGATAAT 844764 37 97.3 30 ...................C................. CTTTATTGCTGTCTTTTTGATCTAATAAGT 844831 37 97.3 34 ...................C................. GCCTCTTTTCTGCCCATTGCATTAAGTGCGTTGA 844902 37 97.3 34 ...................C................. CAAGATCTCATGCGCGGTTTGTCTTTCCCCTGTG 844973 37 97.3 31 ...................C................. ATTGAATAGTCCGCACTTATCAAGAACTAGA 845041 37 97.3 35 ...................C................. TCAAGTGATTGTAATACTGCTTTTAAGGCTGTCCC 845113 37 97.3 33 ...................C................. TGGTTGCTTGATAAAGGTGAGCGTGTTGTTGAT 845183 37 97.3 34 ...................C................. TTAAATAGTCCGCTCTTAATTAATACTAAAATCT 845254 37 97.3 35 ...................C................. TTCAAAGGCTTTTAATACGTCGCCTAGCCCATATG 845326 37 97.3 35 ...................C................. TGTAAAATTAACTTCTACATTAACTCTACTTTTAC 845398 37 97.3 33 ...................C................. CGAAAATAACTTCGGTTGCGAAATCAGAATAAA 845468 37 97.3 33 ...................C................. TACGATGTCGCAGTGATGTTCAGGGTTTTCAGT 845538 37 100.0 32 ..................................... AAAATGCCAGCTCGAATAAGGGTAAGAATTTG 845607 37 100.0 31 ..................................... TGGTAAGATGGCAGGGGTTGTCGAATACACA 845675 37 100.0 33 ..................................... CTGAAATTTAAATGCGTTGATTGCTTTTTCTTG 845745 37 100.0 34 ..................................... TAATTCTAAGCGCTTGTTTAATATACTTCTTCAT 845816 37 100.0 34 ..................................... CTAATAAAAAGTTGAACTGCCCTGTTAAATCTTT 845887 37 100.0 31 ..................................... TCACGATAATAAGGATCCAATAACCAATAGA 845955 37 100.0 34 ..................................... ATTGCATCTAAGACAAATGAAAACAGATAAAAAG 846026 37 100.0 34 ..................................... ATCTGGATCTCATGGATCTTATCATCGTGATATT 846097 37 100.0 33 ..................................... CCTGAAATCGTGATAATCTGACGCGGTGAAATC 846167 37 100.0 33 ..................................... AAGAAGAAGATGGTAAGTTTCCTTCACTCTATT 846237 37 100.0 30 ..................................... AACAATCTGCTTCTAATTCTTCATTTGTCA 846304 37 100.0 35 ..................................... CCCACAACAAGCAACTAGTATTAATGTTAGTATTG 846376 37 100.0 32 ..................................... TCTTCGGCTTCTTCTTGTTCAAAAATCGCAGT 846445 37 100.0 33 ..................................... GTCTTACAATTCGCAATTCATCAATAATACTAT 846515 37 100.0 32 ..................................... AAACAGCTTGAGCGATAGGGATCAGTTTATGA 846584 37 100.0 34 ..................................... TTCATAAATTTATTAGTTTTGATTTTCATAAATC 846655 37 100.0 34 ..................................... AGCATTTCGCTATACAGTTCTTCTGGTGGGTATC 846726 37 86.5 0 ...............................AAC.CA | ========== ====== ====== ====== ===================================== =================================== ================== 31 37 98.4 33 GTCTAAAGACACCGCCCTGTTCTAAAGGGATTGAGAC # Left flank : ACAATGAAAGTGAATACTTAGCAATTCGTCTTGGCTATAAAGAAGTTGCTGATAGTAACCCTTATAGCGGACGCTATTTCATTAAAAATGGAAAAAAATGGATCCATAATATTGATGATGAAGAATTAGAAGCCTCTTATCCAAAAAGTTTTGGATATGACGTTGTTTCGTACTACATCTATAACACATCAAAAAACTCGCTATTACATTCTAATGAATTTAAACCATTAATGAAAAAAGTCCATATAAATTAAATTGATACATAAACAAAAAAATTGTTTTGAAAGCAATCCTCAAGATCTAGAAAATAATATACCATCTTGCGTTATAGTAGATTTATTTTTCTCTTTTATATAAAATAGCAACGTCTTTTTTTGCAATGGAAATAAAACAATTGATTAATATTTGTTCAAATCAAGAGTTAACCTCTCTAACAATACATAAAGTTGGGAAGTGTCAGCTTAACATATTAATAAATAAAGGAAAAACACCTCTCTGCA # Right flank : AAACACACCATATCAATCTATCTACTAAGCAGTACAAATTTGTAAAAGAGAAATCTTTTCGATATCCCACCTAAAATAAACTTACTGATTATTTTTCCTTACTGAGTAAATGACTAACCGAAAACGTTATTTAATTGCTTACGATATTTCTAATCATCGTCGATTAAGTAAAGTACATAAAAAAGTAGAAGCATTTGCTATTGGAGGGCAAAAATCTTTTTATGAATGTTGGTTTACAGAAAGTGAATTGACACTTTTTAAAGTAGACATTCGTGAAATTATTGATATGACTGAAGATCGGGTATTTATTTTTCAAATAAGTCCTCAGGAAAAACCTATGTTATTTGGAAAAGCCAAACTTCAGTCAATATCACCTTTTTTGATTATTTAATGATAGGAAAACAATATGTCTAGCTTATATATTGATCGAAAAGGTGTGGAATTAAAACTGAGTGGAGAAACACTCATATTTTATGAGAATGAGGAAAGAATCGGTACGA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAGACACCGCCCTGTTCTAAAGGGATTGAGAC # Alternate repeat : GTCTAAAGACACCGCCCTGCTCTAAAGGGATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 1547038-1543527 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134514.1 Pasteurella multocida subsp. septica strain NCTC11619 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1547037 28 100.0 32 ............................ ATCATCTCATCCTTTCGCTGCGGGGCGGTTGA 1546977 28 100.0 32 ............................ TAGATATGTGTCAAGTCTTTTTCTTTGGGCTT 1546917 28 100.0 32 ............................ ACCAGAGTTGATGAGGCAGCTAGGAGAGGTTT 1546857 28 100.0 32 ............................ CCTTGATTAAATCATATTCAAGATCAAAAAAG 1546797 28 100.0 32 ............................ TAGACTTTCTAAAGAGAGTTACAACAAAATAA 1546737 28 100.0 32 ............................ TCATGGATGCCGAATATTCCACTCGCTGTGGG 1546677 28 100.0 33 ............................ CAACGAACATTGCAATCAGGCCCGATGGGTATG 1546616 28 100.0 32 ............................ AACAAAGTGTTCTGGGAAATTTACAAAGCCAT 1546556 28 100.0 33 ............................ TTGTAGTAGTAACGAATGTCCTCTCCTAACACA 1546495 28 100.0 32 ............................ TTGCGGGATGTACGTCGGTAATTTGCCATCCC 1546435 28 100.0 32 ............................ GTTTTCATCTAAGATTTTATTGCCGTTTTCGT 1546375 28 100.0 32 ............................ ATAAAATCTTTATCTTTAAAAGAGCTAAGATA 1546315 28 100.0 32 ............................ ATAGATATTTGCTTCATCAAAAGAAAGGCTAT 1546255 28 100.0 32 ............................ TGCTACTACACCTATGAATTTGTACATTTTCT 1546195 28 100.0 32 ............................ ACCAAGAGCAAGTGCAGCTCCCATACCGAATA 1546135 28 100.0 32 ............................ ACACGCGCACAGAAAGCCTAAATTACAAAATT 1546075 28 100.0 32 ............................ AAACGGCAAGCCGTTTCTATCCGCAATGGATC 1546015 28 100.0 32 ............................ ATGCGAAAAGGCGACGAGCTTATTAATTTCCT 1545955 28 100.0 32 ............................ TTTTTCCAACACATTTTTATTTCTCACTATTT 1545895 28 100.0 32 ............................ CACCCACAAACACCTGCCAGAGAGCGTTCTGG 1545835 28 100.0 32 ............................ GTTTCAGGATCAGTAAAATGACGATGTTCAGC 1545775 28 100.0 32 ............................ ATCAAGATCACCGATCTTTTCAATATCCATGC 1545715 28 100.0 32 ............................ ACATTGCATAATAAGTTTTCTTTTTTGCTTAA 1545655 28 100.0 32 ............................ TTAGCCAATAAACGGAATACGTCTAATTAAAA 1545595 28 100.0 32 ............................ TCCAAAAAAAAGTTGCTAACTAACAAGACACC 1545535 28 100.0 32 ............................ TAGATCTAGCTTAGATCTAACCCCGATTTTTT 1545475 28 100.0 32 ............................ TCGCGCGCTATGAGGTTTTTATGGGTTAACTT 1545415 28 100.0 32 ............................ GCGTGAGTGTGAAAGATTACAGGGATTTCCAG 1545355 28 100.0 32 ............................ AACATAAAAACGCGGATTTCCATTCACATCGT 1545295 28 100.0 32 ............................ AGAGAGCGTTCTGGCAGTTGCCATTGCGAACG 1545235 28 100.0 32 ............................ ATTCACATCGTTATTTAATTTAACGAAATATT 1545175 28 100.0 32 ............................ TTTTTTGACTAAGAACATACGGCTGTCATCAT 1545115 28 100.0 32 ............................ ACAATTATTTTTGACTCAATTCCATGCAAAAC 1545055 28 100.0 32 ............................ AGTTCACCATGCAAAAATTGCCAATTTACTAC 1544995 28 100.0 32 ............................ CCCAACAAACACCTGCCAGAGTGCGTTCTGGC 1544935 28 100.0 32 ............................ TTTTTTAATTTGAATAAATTTTCCGTTAATTC 1544875 28 100.0 32 ............................ TTTTAATTAACAAACATCTAATTTACAAGATT 1544815 28 100.0 32 ............................ TTAATTTAATTGTTTAAATATTTGTTCGCTTT 1544755 28 100.0 32 ............................ ACCTCGTCTTGTTCTAGCCATTTCTCGACTTC 1544695 28 100.0 32 ............................ ATGTAATCTGCTAGTTGTTGTCTCATTTTTTT 1544635 28 100.0 32 ............................ TTTTTAGTTTTTTAAATTTAAGGGTTTCCCCT 1544575 28 100.0 32 ............................ AACATATAAGCCAATCAAATTAACATCTGATG 1544515 28 100.0 32 ............................ ATCCATTGCTGTGTGTGTGCCGAGTTTCATAA 1544455 28 100.0 32 ............................ ACAAAGCCCAAGAAAAAAGGCTATTGTGACTA 1544395 28 100.0 32 ............................ TGGTTCTTTTGTTTTCGCCTCACGGTGCTAAT 1544335 28 100.0 32 ............................ CAAGCGTGGCAACATCCCCGTAATGTCACCAT 1544275 28 100.0 32 ............................ TGGTGTGCGACTTCTTGCCGCATTAACCAAAA 1544215 28 100.0 32 ............................ AGATTTCACCACCGATTAAATGCGCCGAATAT 1544155 28 100.0 32 ............................ GTGTAGTAAGTTACAAATTCCCCATTTATAAG 1544095 28 100.0 33 ............................ ACAATCATCACACCGTCCATCGCACTAATTGTA 1544034 28 100.0 32 ............................ TGTATAAGTTCGACGGAAAAATCCACCTAGCG 1543974 28 100.0 32 ............................ AAAAACGATTGATTAAGCGTTTAACTTTGCTT 1543914 28 100.0 32 ............................ ACTTTTTACCCTCAATGTTGGAGAACTCACAA 1543854 28 100.0 32 ............................ ATAATTGCCATATCAAACACCCCACTAATTAA 1543794 28 100.0 32 ............................ TCACTGGATTGGTCCGGGTAGTGATATTTGTG 1543734 28 100.0 32 ............................ TTTTTCTAATGCCTCAATGAGTTTTTCGGCTT 1543674 28 100.0 32 ............................ TAATGCGGAGGTAAAGTATGCCTCAAATTAAA 1543614 28 96.4 32 .......A.................... TGATCAATAAAGACTTGCAACAAATCAGGATT 1543554 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 59 28 99.9 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATTTAGCTTATCAGGTAAAAGCAACCGGCTCAGTTCATTGCCATGTAAGCAGTTTCAATTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCCGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCACTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTGTCGGCACGCTGTTTCTCTTGAGGATTTGACCAAGGTAAATGAATTTGGATACCCTGTACGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //