Array 1 50043-45613 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGBX01000020.1 Acinetobacter baumannii strain ARLG-1934 PR307_NODE_8.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================== ================== 50042 28 100.0 32 ............................ AGCACAAAATTTATGGTATACAAAAGCAGCCA 49982 28 100.0 32 ............................ TCTGATGCGATTAATTCTTGAATGTTCTCGGC 49922 28 100.0 32 ............................ ATGTACATATGCTGTTTTAGCAATCATTGCTT 49862 28 100.0 32 ............................ TTATAGAAACTTTCCCATGCATCCTCATAATC 49802 28 100.0 32 ............................ TTAATGATACTACTCTCACCAATGCTGATTAC 49742 28 100.0 32 ............................ TAAAGGCGGTCATAGTGACCGCCCCATATCGT 49682 28 100.0 32 ............................ TCAACCTTTCTTTCTCTGGAGCAAATCGGTCA 49622 28 100.0 32 ............................ AGCAGAATGTCTTGAGGCAGCCCGCGAAAATC 49562 28 100.0 32 ............................ TCTATAACAGCAGGTGAATAGCCCTGCCCCTT 49502 28 100.0 32 ............................ AAGAAGAAAAAGGGGTTAAACCTGCCTACCCA 49442 28 100.0 32 ............................ TTCACATCTTTTCTTCTGCAACCATGGTAAAG 49382 28 100.0 32 ............................ TTCAAAAACGGCGTTTCTGCAATGATCGATGG 49322 28 100.0 32 ............................ AAGGATAATCAGCACAACATCCGGTTTTAGAT 49262 28 100.0 32 ............................ TATTGCGCCATCTGGGGCATGTTCTTTAATAA 49202 28 100.0 32 ............................ AGAAACTCGTAGCCTTACCAGAAACCTTATCT 49142 28 100.0 32 ............................ ATCCCAGTTGTAAGGAGGATGATCATGGATTT 49082 28 100.0 32 ............................ CAAAGCCCAGTTTGATTACGTCAAGGTCGAGC 49022 28 100.0 32 ............................ GGTAGTCATTTGTTCCAAGAAAAATGATTACA 48962 28 100.0 32 ............................ CCAGCCCGAACAAATGGCACAGCCGTTATTCC 48902 28 100.0 32 ............................ ATCAATCATTGCGGAAATCCCGTCTTTATAGG 48842 28 100.0 32 ............................ AAATACTGAGTTGATTCCTTCGCTTATGACAT 48782 28 100.0 33 ............................ TTAAAGCTGAAAAAGCATTATCAGATAATGCAC 48721 28 100.0 32 ............................ TTTATCCGGTTATCGCGATGCAGTTTATGAGC 48661 28 100.0 32 ............................ TGATCCCTCAATGTCAGTCTCACGATAGCTAA 48601 28 100.0 32 ............................ ACTAACGGCTGAACTGGTGGTCGACTAAGCAC 48541 28 100.0 32 ............................ ACTGTTGAACTGATTAGTGCATAACCGTCTGT 48481 28 100.0 32 ............................ TACGGGGGGAGTGTGGCGGGCGCAGTTTCGGC 48421 28 100.0 32 ............................ ACAAAGCTTGATGACATGGGAGCAACTGCAGC 48361 28 100.0 32 ............................ ACATGCGGTCCTCTGGTAAATCAATACCTGTG 48301 28 100.0 32 ............................ TTCATTGAGGTTATAAATATAACGAACTGTTT 48241 28 100.0 32 ............................ AATACCACTATTCGATGAAAACGCCTAGCCAA 48181 28 100.0 32 ............................ CAAGCCAACCTTTCTCTAAAGATGTTTGGTTC 48121 28 100.0 32 ............................ ATCTGGACCGCTACCATGTGCGAAACTTGAAA 48061 28 100.0 32 ............................ TATCGGGCGCTTGTTCTTTTGAGGTGTCTCAT 48001 28 100.0 32 ............................ ATGAGAGAGCGAATTTTTGCATTAGTCGATGT 47941 28 100.0 32 ............................ AATATGCGACAGATCTAAAAACGCTTGAGGAA 47881 28 92.9 32 ...AC....................... AGCAAAGTTTCAGGACAAAGTTATAGCGCAAT 47821 28 92.9 32 ...AC....................... TAGCTGTAACTAGGGGCACACATTCATAGGAG 47761 28 92.9 32 ...AC....................... ACGATCATCATTCAGAGAATTTCTTAAACCTG 47701 28 92.9 32 ...AC....................... AAAGCAGAAACAGCAGAACCCAGAATCTTTGT 47641 28 92.9 32 ...AC....................... TTTAGTTAGCCCAACAAGAAATTGATCAAGAA 47581 28 89.3 32 ....T.......AT.............. TTTCTTTAATAGGTCTCTTTCATTGCCAATGA 47521 28 89.3 32 ....T.......AT.............. TTGTATTGTTGCTGACTTAAACCAATTCTTAC 47461 28 89.3 33 ....T.......AT.............. CTTGAGAAATTCCATTCTCTTTGGGTACAGGTA 47400 28 89.3 32 ....T.......AT.............. ACAATATAGATATGCTCAGCGTTTTGAACCGA 47340 28 89.3 32 ....T.......AT.............. TTTGTAACCACCAGTTAAAGTATTGACTAAAT 47280 28 89.3 33 ....T.......AT.............. TTTGACAAAAAAAGTGTTTGGATGCTTTCGCCA 47219 28 89.3 32 ....T.......AT.............. ATTGAGAATCCAGTAGGCCGAATAGAAAAGCT 47159 28 89.3 32 ....T.......AT.............. TGTTTTGCTAATTTATCAATATCGATTTTCAC 47099 28 85.7 32 ...AC.......AT.............. ACAGGGGTCAAGTTCAGAAGATTTACGTTACA 47039 28 92.9 32 ...GC....................... GTCATAGTCCTTCTGAACACCAAATGTATAAG 46979 28 92.9 32 ...TC....................... GGTATTAGTGCGAATTGGCTTTTAGCCCACGC 46919 28 89.3 32 ....C.......GT.............. TTAAATGCTCAACTATTTCTGTAGCTAATGGA 46859 28 85.7 32 ...GC....T..A............... TTCAAATGATTTAATGAGCTTGTAGCCATTTT 46799 28 85.7 32 ...GC.......TT.............. ACGTCTTCTAATGATGGACTTTAATCCAATAT 46739 28 85.7 32 A..GA.......T............... ATCTCACTGAAGATATGACCATCACTTTCTTC 46679 28 89.3 32 ..CGC....................... AAGCCATTTACTTTGATAAAGCGACACATAGC 46619 28 89.3 32 ....T.......AT.............. AGCTTCAACACGTGTGCTATTAGGCGGCAAAG 46559 28 89.3 32 ....T.......AT.............. ATGAGCAAATTATCAATTGATCTATCTGCAAG 46499 28 96.4 32 ....T....................... TAGACGGTGTTACCTGTAGGCGGTGTCTACTG 46439 28 89.3 32 ...TC........T.............. ATCGTTTGAATAATATGGACAATCCAGCCAAT 46379 28 96.4 32 ............T............... GCAGCATCAAACGAGATATTGGCTAACATATT 46319 28 85.7 32 ...GT.....A..............C.. CAAATAGTTTTAGCTATCTGAGCATTTAATTT 46259 28 96.4 32 .............T.............. TTCATCACGTAGCCTTTTACACGCATCTTGCG 46199 28 85.7 51 ....T.......AT......C....... TGTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 46120 28 100.0 32 ............................ TATATATACTATTTTCTCCGTCATTTTCTTTT 46060 28 89.3 32 ...TC...................A... TGATAGTTCGGAGCATGTAAATCTCCAAAATG 46000 28 85.7 31 A..TA.......A............... CCAGTTTGCTGAAAATCACCAATACGGTCTT G [45975] 45940 28 89.3 32 ...TC......T................ GATTCTATGAGCGTGACCATGACTCTATTTAA 45880 28 89.3 32 ...GC........T.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 45820 28 92.9 32 ............AT.............. GATCATCTACAGTGATTGAATAAACGGTTTTT 45760 28 82.1 32 ...GC......TGT.............. CAACGACGACGCCGTGTGTTTGTTATCGGAAG 45700 28 85.7 32 ...GC....T..T............... CAAGTAGGATTTGCAGCCCCAATAGTCTTTAT 45640 28 82.1 0 .........T..A..A........AT.. | ========== ====== ====== ====== ============================ =================================================== ================== 74 28 94.7 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [40-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 55596-56402 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGBX01000020.1 Acinetobacter baumannii strain ARLG-1934 PR307_NODE_8.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55596 28 92.9 32 ...C........T............... ATAATCTTATAGGTGTCACGGCCATTAGGTTT A,A [55598,55602] 55658 28 85.7 32 ....C.....AT.C.............. TAGCCCTTCGGCTTGATGATTATTGAGTCTTT 55718 28 92.9 32 ...A...............G........ TATCGTGTATTTGATTCTAAAAAGAAAGTGAA 55778 28 89.3 32 ...A........CC.............. AAACTCACGAATAAACTGTTCTGGTTTCATTG 55838 28 96.4 32 ...A........................ CCCAAACTTCCCGACCATTCTCGATATAAGCA 55898 28 100.0 32 ............................ TGCGCCAGTCGGTGCCGTACCTAAATTTACTG 55958 28 100.0 30 ............................ TTTAAGCAAAAAAAGCCCCTTAAAAGGAGC 56016 28 100.0 32 ............................ CAGATCGTTGACGAGCTAGGCGCGACACCAGA 56076 28 100.0 32 ............................ TTCAATTGTGAAGTCTTTGCCCAGTAATGAAG 56136 28 96.4 32 ...A........................ ATTCGATAGACTGATTCTATAAGCTTATTTGC 56196 28 100.0 32 ............................ TTTCACCGAATGGCGATGGATTCAAGCCACAG 56256 28 92.9 31 ........C..T................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 56315 28 82.1 32 A..T........TC..T........... TTATCTTGAACCAGTGAAGCCGCGTTTTTACT A [56319] 56376 27 82.1 0 ...TC.......T.........C.-... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 93.6 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TCTTGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTGTTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGATTTTACTCCTCACAAATCATAATGATTGAAAGTAGACCTACGCTTTGCTGTATAGCAGTATGAGACAAAAGTTTAAAATGTTGTGCTATCATTTGGATAGTCCTTCTTTAAGTTATAGAGCTTTGGAAACGGACAAAAGCAGATATGAAGTTTTCGACGGCTAAGTATCTGCTTTTTTATGTTCGTTTAGTATTCAAAATATATAGTTTTAATATGTAAGTCAAATAAAATATATATATAACTATTAAGGGATATACTTTACTGATTTCAATTAAGAGTTATACTAAATGCTTAATCCATCAACTGAGATGGTTGAGAAATTAATAGTTATTATTAATTTTTAT # Right flank : ATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTAGGAGCAAGACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCGGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCATCCCAACATTTTCA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [14-14] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //