Array 1 356123-356895 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045695.1 [Clostridium] scindens strain BL389WT3D chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 356123 33 100.0 34 ................................. ACCGCCACCTTGGCCTGATCCCATGGATCCTGCT 356190 33 100.0 34 ................................. ATAAAACTATTCTCATCGCTTCCGCTGATCGCCT 356257 33 100.0 36 ................................. TTTATATTCCTCCAACTGCTCTCCGAATGCGTCAAG 356326 33 100.0 34 ................................. ATAAGCGTAGACAGCGCAAACACCAGAAAATCCA 356393 33 100.0 35 ................................. TCCACATCTTCCTCATATTCCCCGGCCCATTCATT 356461 33 100.0 34 ................................. GAAATGATTAAGTTGGATGACGGCACATATGTGC 356528 33 100.0 35 ................................. TTTCCTTCCATTGTCGATATGCAGGACGCCGTTTC 356596 33 100.0 35 ................................. ACCTTTCCAAGCGCGGACTCGAATACGTTGATCTG 356664 33 100.0 33 ................................. GTATCCTTGAACGCCCTTGCCGCTGATTGTATC 356730 33 100.0 33 ................................. AGTGATGTGATGTCTCCCGTCATCAGGGAATTT 356796 33 100.0 34 ................................. GTATTTCTGAATGTGGAGAGGATCACGACCCTTC 356863 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 100.0 34 GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Left flank : CCGCCATTCTTATGGAAGTAGGTGATAGAATGCTGGTGTTAATAACTTATGATGTGAATACAGAGACAGAGGCAGGAAAGAGACGTCTAAGAAAAGTAGCAAAGCAATGCGTTAATTATGGACAGCGGGTTCAAAATTCCGTGTTCGAGTGCAATCTGGACGCCGCAAAACTTCGCCAGGTAAAGGCTATCTTGGAAGACATAATTGATAAAGAGGTTGATAGTTTAAGATTATATAATCTAGGTAATAAGTATAAAGACAAGATTGAACATATAGGAGCAAAGAAAAGTTTTGATGTGACTGCCCCTCTTATATTCTAGAGTGGTTTAGTGCGAATGTGAAGTGCACATGAAAATGCAGGGAGATTCGCACCTGGATATTGATGATATGAGGGCTAGGGAAGTTATAATTTGTTGTGTAGGTGTTGGAAAAAGTTCTTTTGTTTGGCGTTTTGCATAAGAGATTGGCTGTATATTAGGGGTTTTATGTGCAAAATTGCT # Right flank : TATCCATTCTACTACAATATAAATTGGTTAATATACTTAACAACCAGTTAGGTTGTTAGCCATCTTATTGCTTAAGCTGTATAATGATGGGGCAATCGGTATATCGGCTTCCTTTCTTGGACTTACACGTCCGTTTTTAAGACTGATAACCAGCTCCTCATTCGCAGCGTTCGTTTTATGCAGGTTGAACCACTTTCAGTGCGTTCGTGTCACACCACAGTAGATTGAATAGGCAATGAGTAAAGTTGGTATTTATCTTTTGCACTATAAATCTTAAGGAGTGACAAATTTATGAACATGAACGCAGTTGGTATTGATGTTTCTAAAGGTAAAAGTATGGTTGCCATCCTTCGTCCTTTTGGTGAAATTGTTTCCACACCATTTGAAGTCAAGCATACAGTCAGCGGTATTCGCTCTCTTATCGAGCATATCAAAGCCATTGATGGTGAGTCACGCATTGTAATGGAACATACGGGGCGTTATTACGAACCCCTTGTCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 358549-359933 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045695.1 [Clostridium] scindens strain BL389WT3D chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 358549 33 100.0 34 ................................. ATCATGTATTATGTCAACAATTCAATTAATCATT 358616 33 100.0 35 ................................. CTCAACTAAAGTGTGGGATGGCACCTATGCGAACG 358684 33 100.0 35 ................................. TATCACGTATTATGTCAATAATTCAATTAATCATT 358752 33 100.0 34 ................................. GTTGATGTCTCTATATCTCCTATGACTCCCCCGT 358819 33 100.0 33 ................................. ATATTCCGCATTGCTGATCTTGAGCGGTTCAAA 358885 33 100.0 35 ................................. ACCAGCTGTTCGATGCCCTTTCCGCTCCGGTATGC 358953 33 100.0 36 ................................. GCTCTGCACCGGCTCTCCCCTAGCGGTCCGGAAGCC 359022 33 100.0 33 ................................. CCTTCTGCCCGCCTCCCAGTCCTCAAGCGTTCG 359088 33 100.0 34 ................................. CTTGTCCTCTTTCACGCATCTTTCAAGAAGATAC 359155 33 100.0 34 ................................. TCTCATAACCTTCTACCTCCTAACATCCATAATT 359222 33 97.0 35 ............................T.... ATATTTTCTAAAATATCCTTCTGCGCTTCTTCTGT 359290 33 100.0 33 ................................. ATTCATTATGTTCGCTCCCTGCCTGCGTTTTCT 359356 33 100.0 34 ................................. GTTTTCAAATAGTTTCTGTGCCATTTCGGCCGTT 359423 33 100.0 35 ................................. TCTGATAAATACACCACCTGGATGAATCACTTGCT 359491 33 100.0 35 ................................. TCTGATAAATACACCACCTGGATGAATCACTTGCT 359559 33 100.0 35 ................................. ATGCAAGTAGCAAGTATTAAGGAAAGGAGGTATAT 359627 33 100.0 36 ................................. ATTTCTGCATCTTCGGGGCAAGTCTCGCCCCAGTCC 359696 33 100.0 36 ................................. ATGTTTTTCCCGTTATCACGGCAACATCCGAAGTAG 359765 33 100.0 34 ................................. CAAGGAGGAAATTATTTATGGCACAGACACAGAA 359832 33 100.0 36 ................................. GACGGAGCAGGGGGATTCTCCCAGCGCCCAGACCAG 359901 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 21 33 99.9 35 GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Left flank : ACTTGGTCCCCAGCTTATGGCTGAGATTGGTGATGTTTCCCGCTTCACTCACAAAGGGGCTATCACCGCCTTCGCTGGTGTTGACCCCGGCGTAAATGAATCCGGTTCTTACGAACAGAAAAGTGTTCCTGCTTCCAAAAGAGGTTCTGGCACTCTTCGTAAAACCTTATTTCAGGTAATGGATGCTCTTATCAAAACCAAACCGCAGGATGACCCCGTTTATCTGTTTATGGATAAGAAACGATCACAAGGCAAACCTTACTATGTCTACATGACTGCCGGTGCGAATAAGTTTCTTCGCATCTACTATGGACGGGTAAAAGAATATCTTTCATCGCTTCCGAAATAACCATCTCATACTTACCTTTATTTTAGACCAGCGAATATCGGTGGTCTTATTTCAATGTTCAAAATCCTACATAAAACTTTTTGCCTGAAATAATCAATTTACTATTGACTTTTTATTTGCAGGCTTAAAACAAACCGTGATTCTCCCATTA # Right flank : TAAAGAGTAGAGAGGGGCGTTTTGGTATGAAAATAGAAATAGGCAAAGAATTTCCACAGTATTTTAAGCCCTCATATCCAGAGGAATTTAAATTATTTTCACACTTTGAAACGACAGCAGGAATACCAACTGTTTTGTTTGCAATCACGACTTGGAAAGAGAATGGTAAGCCGAATGTGTGCTTTCATTCGTGGAGCTGCTTTCACGGAGATAAAACCGCTTTCTTTGCCGTGATGGGGAACTTATATCAGCATACCCACACCTATGCCAATATCCAAAGAGAAAAATGCTTTTGTATTAACTTCCTTCCGATAAGTTTCTACGACAAGCTGGTAAACACCATTCGCCAAAATGAAATGGACGATGACGAATTTGCGGCAGGAGGGTTTACAGCTTCTTATGCCAAAACAATTCACGCCCCTGTAATCAATGAGGCGTTTCTTAGTATGGAATGTACCCTGAAAGAAGTACAGGATTTAAGCGGTGCGGGAATTACAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 2820365-2818108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045695.1 [Clostridium] scindens strain BL389WT3D chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2820364 33 100.0 34 ................................. ATCGTTTGGGCCACCGGTTTCGCTGCTGCTGTTC 2820297 33 100.0 35 ................................. ATTGTGGCACTGTGTGCATAGGCTTGTCAGGTTGT 2820229 33 100.0 35 ................................. AGAAGTTCCATCACCCATCCAACCGCAAACGTTAT 2820161 33 100.0 34 ................................. ATCGCCTCCTAGTTCCTCTGTGTAGTTTTTTGTA 2820094 33 100.0 34 ................................. GCTAGGGCAGGTGTGTTTGCCGTTTTCGGTGTTG 2820027 33 100.0 34 ................................. GCCCTGCACAACTGCACATACCGGGCAGACGGAC 2819960 33 100.0 35 ................................. ACCGGATCCCTTTTATATTCCTCATACTCTATTTC 2819892 33 100.0 35 ................................. CTCCTTGCACCACGCACACTCATAGTGATGCTCCC 2819824 33 100.0 35 ................................. CTCCAATATCATATACCCCATCTCCACCACTGATC 2819756 33 100.0 34 ................................. GTTTATTGCATCTATATACTCCTGCTCTGTTCCT 2819689 33 100.0 36 ................................. GAAGCCAGACTATCCAACTACATCTCGCCTGGAATC 2819620 33 100.0 31 ................................. AGAGGTTATTGCCGATATGGATGCAGGTCAA 2819556 33 100.0 35 ................................. GCCAATTACAACAGTAACATTCAATGCTTTAAAAA 2819488 33 100.0 35 ................................. CTTCCCTCCTACTGTATTAGTTTTCTCTCCAAGTC 2819420 33 100.0 34 ................................. GCCTCTTTCTTGGTCTCTTCTGAGAATTTCTTTT 2819353 33 100.0 33 ................................. TCCTCCGTGCTTGTATCCACTTTCGCCGGAAGG 2819287 33 100.0 34 ................................. AACGGTCTTGATAATGTTCCTTATGATGGATACA 2819220 33 100.0 34 ................................. TCCCGGCCGGGGTCTCCGCCTCCTTCCTGCTATT 2819153 33 100.0 34 ................................. ATATACGCCTTGCTGGTACCGAGCATGTCAGCCA 2819086 33 100.0 34 ................................. ATTTTGTGCCCGAAGGCCTAAAACTACAGGGAGA 2819019 33 100.0 35 ................................. ATTTGTGAGTCCATTTGCGTATCTGTACGCATACC 2818951 33 100.0 36 ................................. TTCTCTGATCCCGTTCCTGCTGCTCGCCCTCCAATC 2818882 33 100.0 35 ................................. ATCAATCGTTTCAACGAAACAACATTATCTACATA 2818814 33 100.0 35 ................................. GCCTCCGATGCATTCGCTGCCATGCGATCCCTCCC 2818746 33 100.0 35 ................................. TATTCGCTGGAAAAATATGGCGAGAAGTCTCCATC 2818678 33 100.0 34 ................................. CATGCTCCATCTGGCAACCCTGGCTCCTTATCAT 2818611 33 100.0 34 ................................. TCGTCTACCTCCTCTATGGGTGCGGATTAAGGCG 2818544 33 100.0 33 ................................. ACCCGTATTGCTTACATACAGTCCCATTGATGA 2818478 33 100.0 33 ................................. ATCAACGACTCTTTCAATGGCTCCTCCCGTTGG 2818412 33 100.0 34 ................................. GCAGGAAAGCACTGAGGGAAATGAGGAACTGCAA 2818345 33 100.0 35 ................................. TCTTCATTGCATTCTTCCAGCCATTCCGAAAACTT 2818277 33 100.0 36 ................................. AAAATGGATTAAGACGTCAAACGGCTTGCCTGTATC 2818208 33 100.0 35 ................................. TCCTAACATAATCTGCTGTGCCCATAACATTGCCA 2818140 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 34 33 100.0 34 GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Left flank : TATACTGTATATTTCAGATATTGCCTCCGAATTAGAAGCGAAAAAATACTCCCCCGAAGGGGCACAGCACAGGCAGCAATCGCAGAAAAGAATGCATAATTAAATCACAAGTTATTTTGACGCAGGGGCAGTATGCCTCTGCGTCTTTTGAATATTGTTAGAAAGATTTTCTTACTATAGCCAACAAGAATTAAGGGTGGTGGAATAGTATGTCTAAAGGAGTTCGAGACGGCAGTCCTTCTTATCATTAAAACTTTATGAAAAAGCTAATTGAGAAATTAGAAATATAAAAAAAAATAAATTTCCTTGAAAATTAGATATCGATTCAGTAGTGCGAATGTGAAGCGTACATAAAAATCCCAGGATATTCGCACCAAAAAGTTGCACAAAAATAGTGTATTGTATTACAATATAGATTAGATGAGAGAATGTATCTAAAGGTAACTGTAATATAGCACAAAAATTTTGCAGTTATATATTAAAAATTGGATAAGTTTGCT # Right flank : ATAACATTCACTAAAATTGAATAGTTTACAATTCACACTGGGGACAGGACTACGAAACATATTTTAAGAAAGTTTATATAAAATTACCGAGTCCGGGTACTGAATGATACACGCATGTATACAGGCAATGAAAAAAATAACAAAAATTATTACACATATTGTTATAGAATTTGTAGATGAATAGTAAAAAAGTGAGTGGTAGGAAAATCTGCCACTCATTTTTTAAAAAAATTGAAGGTTCAACTCAGTATGTGATTGTTAATTGATATAGATAATACCTATAAATTCATATAATATATCGAAAGCATTGATTTCACAGCAATTCAATGGCATGGTATCATATACGCATGTGGAAAAGTCATACGAACATTATGAGAGGTTGTTATGAAGAGAGAACGAAAACTTGTATTATTATCGCATTGCATCTTAAACGTAAATGCTAAGGTGGAAGGAATTGCTACTTCAAAATCTGGTATTACAGAACTTGTTACGAGTCTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //