Array 1 4-760 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKZ01000228.1 Actinomadura geliboluensis strain A8036 NODE_231_length_14860_cov_7.10765, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 .........A................... GTGGAGGTTCACGAGCGGAACAACCCCGAGGC 65 29 100.0 32 ............................. ACGTGTTGATCACATCGATCGTCGCGGTCGCC 126 29 100.0 32 ............................. GCCAACGCGGCGGGCGAGAGGATCGCCCGCCG 187 29 100.0 32 ............................. TGGGACGTGAGCGGCGAGGACCGGTACGTGCC 248 29 100.0 32 ............................. ATCGGCGCGGGCATCCCGGTCCCGCAGGACAC 309 29 96.6 32 ............................A CGAGAGGCCCCCGGGACGAATAGGAAACGTCC 370 29 100.0 32 ............................. GCGACATCCGGCTCGTCTTGCAGGAGCAGCAG 431 29 100.0 32 ............................. ACCGCCTCGGCCGCCCCGTTCCGCTCCAAGAC 492 29 100.0 32 ............................. CGGAACGCGTGGGCGAGTCGGATCTGCTCACT 553 29 100.0 32 ............................. AGACCGGATGGTTTGAGTGACCGACCCCATGA 614 29 93.1 32 ......T.T.................... GAGAGTTCCCCAGTCTGGGTCGGGCGGTTCTC 675 29 89.7 27 ...G...T....................A CACCGACGCCCCGGCGGCAGCGCTCCG T,CC [695,699] 734 27 82.8 0 .C.......-....C..-.C......... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.8 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GGGG # Right flank : GTCCCAACTCCGATCATCAACGTCTTGGAGGGCGTTCTCCCCGCACGCAGGGGTCCGTCGCCACCGCACCATCCGGCTCGGGGCGGATTCCCTCGGTGCGGCATGTGGTGTACGGGTCAAATCCTGCCTCGCTCTTGTGCACCGAGCGAGGGACCTCCTTTGCGAGGTTCGGTTGCTGGGTCTGGTTCGGCGGGGTTGAGTGCTATGAGGGTGAGTCCGTCAAAGTCGACGGGGGTACGGCGGCGTCGGCCAGCGGTGTGGAGGGTGAAGCCTTGTTCGTTGTCGTCGGGGTGGAGGAGGACAGCGGCGCCCTCGTCGATGGAAGCGGCGACGGCAGACCAGAGTTCGGTGCGGACGCGGGCGGAGAGGGTGCCGACGTAGAGGCCGGGCAGAGGGTTCGGTCATCCAGCGGGTGAGCGCGCCGCGTAGGTGGTCGGGAATGGCGGTGGTGGCGATGACGGTCATGTTCGCCATGTCAGTCGTGTCCGTAGTTGGTGCCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10527-11605 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKZ01000228.1 Actinomadura geliboluensis strain A8036 NODE_231_length_14860_cov_7.10765, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 10527 29 100.0 32 ............................. GTCCGGTCGTTGACCTTGTCCTGCGCTTCCGC 10588 29 100.0 32 ............................. TACACCGGGTCCTGCAGCCGGATCCCGACATG 10649 29 100.0 32 ............................. CCGATCCCGCTCGACAGGTTCACCCTGGACCG 10710 29 100.0 32 ............................. GTCGGTAGCCGATGACCACGATCCTCGCTACC 10771 29 96.6 32 ............................A TCCGGGTTCGAATCCCGGTCGCGCACGGGTGG 10832 29 100.0 32 ............................. AGGCAGGCGTACGGCCGCGCGATCGAGATGGC 10893 29 96.6 32 .......T..................... CTGATGATCAGCGCGCCGATGACGATGACCGC 10954 29 100.0 37 ............................. GACGCGGCGCAGGGCATGGACCTGCTCACCGCGACCC 11020 29 96.6 32 ......T...................... AACTCATCGCCGCCTACGGCATCGCCCAGGCC 11081 29 100.0 32 ............................. ACGAGCGCGCCCGGGACGGGGCGGAGTGACTG 11142 28 89.7 32 ...T.............-C.......... CCGCGGGTGGCGGGACATCGGATACGCGTTCG 11202 29 93.1 32 ......................A...T.. GCCGAGCGCATGGAGGAACTGCTCGCCGCCGG 11263 28 89.7 29 .................-...A...C... TCGAAAAGTGTTGTGATGAGGTTGCACAA 11320 29 100.0 37 ............................. TCGCGACGCTGAACCGGGCACCCCACCCCTGACGACG 11386 27 93.1 32 .................--.......... ACCACTGCGCCGCCTTTGCTGACGCCGTCCTG 11445 29 93.1 32 .......................A...A. ATGCGAGGTGGCATAGAGGGGTGGAGGCAGAG 11506 29 82.8 41 ...................T...CCG.T. GGCCGATCCGTAGGGTCCGGACAGCCCAGCCCCGCCGCCAC 11576 28 69.0 0 ..............-....ATT.CCG.GC | AA [11593] ========== ====== ====== ====== ============================= ========================================= ================== 18 29 94.5 33 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : TCCGCCGTACTCCGGTGCCTGGACCAGCAACTGCGCGTAGAGGTCGTCTACTACGGCTTGAAACGACGGAGAGATCTTCCCGACGTCATGCAGGCCGGCCCAGAAGGTGACCAGCCTTCGCATGGCCGCGTTGGCTGACGCCGACTCGGGACCGGCGCCGTGCCTCAGCACAGCGATGCCCTCAACCCATGCATCCCATAACGCGCCCGCGATCGCAGCTGTGTCCATCAGATGACAGATCACTGGATACGGAGCGGGCAAGCCATGCTGCTTCCCCCACAGACGAGGATCGACAGCCGAAGCCGCCCCGGACGCCCGGTCATCTCGTCGCATAGAACCTTCTCCCAGCCCGCCCCGTCACCGATCCCCACCACTGGAGCACAGACCACCGACAAAACCAGCGCGTCCACGTAGGCTCAACCCTGTGAGCCGTCGCCGCCAACTCCCCACCCATTCATCACAAAACGATGACGCCTCCACATAGCCACAGGTCGCGAAGT # Right flank : CGCGAGCAGGGTCCGGTTGGCCGAGCACGCTGGCCGCTATATCTTCCGGTCCTCCCCTTCCGGCAGAGAGCAATCCGTGCCTCCATCGATGCTTGACCGTGTTCAGGAAGGCACCCTTGCCGTCAATTACTCCACCACCCCCTGTTGGACCGCGGCTACTCCCAACTGGAACCGTGTTTGGACTCTCAGGGTCTCTCGCAGAGATCTGATATGTCGACGAACCGTGGTGAGACTCACGTCCACTCGTTCCGCAATAGCCTCATCCGGCAGGCCCTGAACGAGTAGGCGGAGGATTTTAACCTGAATTTCCGGGAGACCTTTGCTGTTTCGCCCGGTCCCACCGAATGGGATCGCTCGCTCCCAGAGTAGTTCAAAGTATTCTCCAAGCGCGTCTACAATCACCGAGGACTGAACCAACAGCGCACCGGCTGACTCGGCTGCCGTGAGTGGAAGGAGCGCGATCGCTTCGTCAGCGAGGCCCATGCTCATCCGAATGCGGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7621-11245 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKZ01000235.1 Actinomadura geliboluensis strain A8036 NODE_239_length_14589_cov_5.06977, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 7621 29 100.0 32 ............................. GCCTCCATCGCCTCGAACACCTCATGGGCGAT 7682 29 100.0 32 ............................. GCGATCCCGTCATTCACGTCGGTCCCGGGCTG 7743 29 100.0 32 ............................. CAGCGCTGGTTGGACACCCCGCCCGCGCAGGC 7804 29 100.0 32 ............................. GTCAACGTGGCGGCCTTCTCCAGGTGCTCCTG 7865 29 100.0 32 ............................. TCCTCCGTCGCCCGGGCGATCTCGGCGACCTC 7926 29 96.6 32 ............................G CGCTGGTCACGCTCCGGGCGAACGGGGAAGTT 7987 29 100.0 32 ............................. GGCTACCTCTTCTACTACGAGGAGCCCGCGCC 8048 29 96.6 32 ............................G TCTGGCGAGTAGAGCCCCGTAGACGCCGGGGC 8109 29 96.6 32 ............................T CGCCGCATCACCGAGCTGCCCACCGGGACGCC 8170 29 96.6 32 ............................G AGCCTGGTGTGGCTCGCGATCGGCGCGCTGGT 8231 29 100.0 32 ............................. TGCTGGCGTCTCCATGGCGTGGCTGGCCGCCT 8292 29 96.6 32 ............................G GTCCGGGTTGTCGTCCTCCGGAACCAGCCGCA 8353 29 100.0 32 ............................. GCGACCCACGCGCAGATCGGCGCGGCCACGGC 8414 29 100.0 32 ............................. TCGCCGGCCTTGATCCGGCCGAGGAGGCTCGA 8475 29 96.6 32 ............................G CCACGTCTACGCCGATGGCGGTCAACTCCCGT 8536 29 100.0 32 ............................. CCAACGGCTGTGAAGGAGCCGAAGGACATGAC 8597 29 96.6 32 ............................A CGTACCCCCTAAGTCCCTCTAGTCCCTCTGTA 8658 29 96.6 32 ............................G ACGGGGCGGTCCTCCTCGGGCAGTCCGCGCTC 8719 29 100.0 32 ............................. CCAATGGCGACGAAAACCGGGCACCTGTACGT 8780 29 96.6 32 ............................T TTCGCCGTTCCGTATTCGGTTTACAAGCTGAC 8841 29 96.6 32 ............................G CGGTGATGAGGTGTTGTCCGGGGAGTAGTCCC 8902 29 100.0 32 ............................. TGCTTGCGGCGCGGCAGCGCCCTGAACACGGT 8963 29 100.0 32 ............................. GTCACCACGAGGTAGCGGGTCCTGGCCGGAAG 9024 29 96.6 32 ............................G GGTGATCTCGGTCGGCTCTGGCGTCACGCGGG 9085 29 100.0 32 ............................. CGCTGAAGTGCCGTGTATCGGGCGATGTCGTC 9146 29 93.1 32 .....................G......T CCTGGCGCGACCGCGAGGGCCTGTGCGGCTGC 9207 29 96.6 32 ............................T GCTTCCGCGCGGTCTCCTGTGAGGTGTGCCCG 9268 29 96.6 32 ............................G TACGGCGCCCGGTCGCCGTCCTCGTCGGTGGA 9329 29 96.6 32 ............................G TTCGTCTTCACAACGGTGTGGACGATCATCTC 9390 29 100.0 32 ............................. AAAGCCACCAGGAGGACCTAGACAAGGGTTCC 9451 29 96.6 32 ............................G GCGTCCCGACCGGACTTGACGGCCCGGTAGTG 9512 29 96.6 32 ............................G CGCGAGGTCCAGGAGGTCGGGCGGCAGAAGAC 9573 29 100.0 32 ............................. CTGCGGTCCGAGGTGTCGCAGGGTGTGATCTC 9634 29 96.6 32 ............................G ATGCTGAGCTGACCAGCGCACAGCCCGCACCG 9695 29 100.0 32 ............................. CGTTGGATGAGGGCGACGTGGTCTGTGTCGCG 9756 29 96.6 32 ............................G CAGGCGCCGGGCGCGGAGCTGGTGCCGGTGGC 9817 29 100.0 32 ............................. GCCCGCTCGGTCATCGGGGTCGCCCTGACCAC 9878 29 100.0 32 ............................. GAGATCGACTACGACTACGTCGTCCATGTCGT 9939 29 100.0 32 ............................. GCCCGCTCGGTCATCGGGGTCGCCCTGACCAC 10000 29 100.0 32 ............................. CTCGGCCGACTCCGCTGACCTCCCCAGGCAAC 10061 29 100.0 32 ............................. CACGGCGAACCACAGGATGTCCCAGCGCGGGA 10122 29 100.0 32 ............................. CTCGCCACCACGTATGCCGGGTGTGTGGCGAC 10183 29 100.0 32 ............................. GCGCCGATGATGGCGCGCCAGGCCAGGTGGAC 10244 29 100.0 32 ............................. CGCACCGCCGCCCTGTTCCGGAAGCGGGACGC 10305 29 96.6 32 ............................G CGGCCGGTGGGCGACGACCTGTGGACGTGGTC 10366 29 100.0 32 ............................. CTCGCCACCACGTATGCCGGGTGTGTGGCGAC 10427 29 100.0 32 ............................. CGGGACGCAGACTTGTCGTTGTCGCAGTAGAC 10488 29 96.6 38 ............................G GCGAACACCACGGGGCGGCGGCCGACGGCGGCGGTGCC 10555 29 96.6 32 ........A.................... CTGACCGGAACGCCGTACACCACCGCGCCGGA 10616 29 96.6 32 ............................G CCGCGCCGCGTGCGTAGAGCTGGCGCTGACGG 10677 29 96.6 31 ............................G CGCTCCTCCTGCGTCCGCTTAGGCACCACGG 10737 29 96.6 32 ............................G AGCCGTCTCGTGTATGACGCTAAGGCGATCCG 10798 29 96.6 32 ............................G CCGTATGAGGCGTGCCTTTTCGGACGGGCCCT 10859 28 93.1 32 .................-..........G TAGAACTGACGTTCCGGCCTTAGCCGAAAGAC 10919 29 93.1 32 ..............T.............T GCCTCCGCAGGGGGTCACCATTCCTGGACTGG 10980 29 100.0 87 ............................. CCGAGGGCGGCGTTGGGGTCCCATGCGTTCAGGTCGGCCCCGCAGGGACGGTTCCCCGATCACCGGCTGGAAGAGTTCGGAGGCTTT 11096 28 93.1 32 .......T.........-........... CGATCAGTTCACCCGAACGGAGACAGCCACTC 11156 29 86.2 32 ..................A....CT...G GCCGAAATGGGAGTGAAGCTGACCTACGAGAT 11217 29 89.7 0 .............T.....A........G | ========== ====== ====== ====== ============================= ======================================================================================= ================== 59 29 97.7 33 GTCGGCCCCGCACGCGCGGGGATGGTTCC # Left flank : CGACGCCGCCAAACGCACATACCAGCTCCTCACCAACCGCCTCGCCGACCTCGACACCGAACCGGACGACCAAACCCACCAACTACTGGCGAACATCCACCAACCTCACTAATCTCGCTGCCAGCGTGAGATGCCTCGTGCGTCGTGACTTCTAATGTGTCCCGGGTTCCGTGGTGTCGTTGATGTAACCCGAATTTGGTGGTGTCGGAATACCGGAACCTCATGCCAGCAGTGGGACCGAGTGGATCCTCTCGTACTCGACCGGACTGAGCATCCCGAGCGCGCTGTGGCGGCGTCGGCGGTTGTGGAAGATCCCCAGTTCTTCGAAGATCGCCTTGGCCAACACAATCCGGTTGCGCCAGCGTGCCGGTTGAGGAAACTCAACCTGCATCTCGGGCACCTCACCGCTCTAAGCTGCGACACCCCGATCGAGGGACGTGACCGCGATCCAACTAAATGAAAACCCGCTCTCTCGTTGATAACGTCGCAGGTCAGCAAGG # Right flank : GGCAGCTCGCAGGCGGGCGCGTCCGCGTCCTCCGTCTCGAAGACCGGAACAGCCCGCCAATACGAGATATCGTCCACGTTCGTCCCAGCGAACATGCCCACTGCCGCCGCAGGGAGCAGCAAGGACGCAGGGTGGTCGTAACCGCAGGACAGGCACGCGAAGGTCGTCCCGCGGCCACGATCGCACGACTCGAACGTGATCCTGGAAGCGACGTCGAGAGCGTCAGGCCTGCCGCGGTTCCGCCCGGAGCATGACTGAGGTTCGTGTTCCTCATGCCACGTGTGCGTCGGGAACAAGGCAGAGGTGGAAGCGGACTCGTGTCCGGCCGGCTATGAGGGTGTCCCACTCCCAGTCGCCGTCCGAGAGCGCATCGAGGAGGAACAGTCCTCGGCCGTGCTCTGCTCCGTCGCGTGGGAGGCTCTGGACGGCGGGGAGCTTTCCATTTTTTCCGCCGTCCAGGGCTTCGATCGTCACGCGGTCATCGATCACAGTGCACGCCA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.68, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 160-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKZ01000110.1 Actinomadura geliboluensis strain A8036 NODE_110_length_22460_cov_6.62253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 159 30 100.0 31 .............................. AGATCGCGTTCTTCGAGCGGGAGGCCGAGCG 98 30 96.7 31 .............................A TGACGGCTGCGCCGGTGCACCCGGCGGCGGC 37 30 90.0 0 .......TT....................C | ========== ====== ====== ====== ============================== =============================== ================== 3 30 95.6 32 GTTCTCCCCGCGCGGGCGGGGGTGGTCCGG # Left flank : AGGCTCCGGCTCCCTGGTATGCCTTGTCGGCCGGAGCGAGGATTCCCACCCTCTCCAGTTCCTGCAGGACGCCCAGACGCGGGCGGCGGTCAGGTCATGCGTCTTGCCGGGCATCGCCCCCGGAAGTCCAAAGGATCTTCCCGCTCGGGCTGACGATCGCCTGCACGTTCATTCCGTGCACCCCGATGCTTGCCGGAGAAGTGGGGCGGTCGACCTTCACCCAGTCGATGTGGATCAGCGTCCCGCCCAGGACCAGGTGAGACAGCCTGGGTCGTGGCGATCAACCCGTCTACCAGGGCTTCTCTGTGTCCGAAGGCACTCCATCAACTCGCGATCATGCTGTGATCAACCAGCCCGTCTGAGGATAAAACGGGGTCACTGTCAACGAGCCGCTCGTTAACGAAGCCAACGTAGGCTTGGCCTCATGGCATTTCACCAGCGACCAACTGGACAGAGATCTCAAATCAATAACGCCCCCGCATAGGCCCAGGTAGCGAAGT # Right flank : CGCACTCT # Questionable array : NO Score: 3.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGGGCGGGGGTGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGGGCGGGGGTGGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5185-4426 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKZ01000110.1 Actinomadura geliboluensis strain A8036 NODE_110_length_22460_cov_6.62253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 5184 29 96.6 32 .......................C..... CGTGGGAATGGGGCCTGATCCTGCGTGACCCG 5123 29 100.0 32 ............................. TCATCGAGCGTGCGCGTGCCGAGCGGATGGGT 5062 29 100.0 32 ............................. TGGGCGACGGGGCCGGGGAAGCCGCGCCAGAC 5001 29 96.6 34 ............................A AGACCGGCGGGGTCGAACCGTTCGCGCGCCGTTC 4938 29 100.0 32 ............................. GCCCCGGCGCGATCCTGCACGCCGGCGTGGAC 4877 29 100.0 32 ............................. ACACGGCCTGCGACACAGGACTGGATCCGGCG 4816 29 100.0 32 ............................. ACACGGCCTGCGACACAGGACTGGATCCGGCG 4755 29 100.0 32 ............................. TGTTTGGGCGATTCGGGCAGCGTCCCGGCGTC 4694 29 100.0 32 ............................. CCCTGGTATGCCTCGGGGCCGCCGGTGCGGTC 4633 29 100.0 32 ............................. GTGGCCAGCCCGTTGCGGTCGCGGGTGGTCAC 4572 29 100.0 32 ............................. GCGACCGTGCTGACCGTCGGGCCGGACGCGAC 4511 29 96.6 29 .....................A....... TTGCGCGGTCCGGACTGATGACCGCGCCA 4453 28 75.9 0 ........-..C...........CCG.AC | ========== ====== ====== ====== ============================= ================================== ================== 13 29 97.4 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : ATCAGGCTCGCCGACCGGTTGCCCGCCAATCACCCCACCAGCTTGCTCATCATGGCCATGGCGGACGAAAGCTCCCGCTCCGCATAGGCACAACCATCACCCATATACAGCCACCCGCACACAGGGCGGACGGTGGCAGGCCCATCCCCGGCTGCCAAGACCTGTCTCTCGATCCCACCTTCTGCGCCCCAGCATGCTGCCGTTTCGCGGACGGCACAGCGGGGGAAAGGCGGCCGCAGAGCTTTCACGGACGTCATCACCGGGCAGCTCGCCGCCACCTGATCCACGGGCACCCCGGGCCTGAGGTGATCAGCAAGAGCTTGTACGTGGCGCGAATCCTACGGTCACCTACGGTGGACCGCGCCGAACCGACTGGCACTGTCGGCGAGCCGCTCACTGACGAAGCCACCGTAGTCTTGGCCCCGTGACAGTTCACCGGCTATCAACTGGACGAATATCTCAAACTGATAACGTCCTGACATAGACCCAGGTCACGAAGT # Right flank : ATCAAGAACGCGCGACATTTCGTTGACGAGAACCCCGCTCCCCTCCGTATTGGAGAAAGTCGTTCGTGCGCAACTCGCCTTCGAAGGGAGAGGGCCACGAGGACAAGCCGAGACGAAGTCCCCGCTGACAAGCCGGAGGAGCCCCAGGCCCATGGGGATGGAGCTTAAGTTAGCCTGAGGGCGTTGGATGCCTGTCGGCAGAGCGTCAGCCGAAGGAGAGTTCGGTGTCCCGGTTTAAGAAGTCTAGGCAAGGCCGGGATGCCGAAGAATCGCTCCGCTCGGGCGCAGACGGGATCGGTCGGCCAGCCAGGTACTTGTTAATCTATCGGCGGCGATCAAGGGCGTTTGAGTTCGACCGATGGGGCCGCATGCCCCGGCCACAGCTGCACCCTGTGTTCTTCCTCGGCGTTGCCAGAGTTGCGCACGCTCAGCCGTACCCGGTACACCACGTTCGGCCATACCTGGGTGGACAGCTCTGGCAGCACGGTTCCTTCCTGGTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 637-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKZ01000364.1 Actinomadura geliboluensis strain A8036 NODE_401_length_9255_cov_6.50909, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 636 29 100.0 32 ............................. GCGAGGCTCGTTGGCCTCATCCTTGATATCCC 575 29 100.0 32 ............................. CCCCAGGCGCTGATGTGGGAGCGGTACGGGCA 514 29 100.0 32 ............................. CCGCTGTAGGCTTCGGGGCCGCCGTCGCGGTC 453 29 96.6 31 ............................A CTGGAGGAACTGGGCGAGGTCGCGGTCACCG 393 29 100.0 32 ............................. CATGAACGACTGGGTCGGCATCTCCTGCAGGA 332 29 100.0 32 ............................. AAAATGCCCTGGGTTTCGGTGGCGGACCCGGC 271 29 100.0 32 ............................. TCGGAGTCGATCGATTTCGCGACCACGTTCCC 210 29 100.0 32 ............................. TACTGGTCGCAGATCTCCGGCGCGGTGATGGC 149 29 100.0 32 ............................. TGGAAGCTCGACGTCAACACCGGCACCGTCAG 88 29 100.0 32 ............................. TTCGATGACGGCGGGCAGCTGCCGCAGGGCGC 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : TGTCCTCGTCGGTTGAGGTCTCTTGATCGTCCATGTGGATTGCGCTCCAGCATCGAAGAAGATTCGGTCATGCAGCAGCCCTCTCAGTAGGCGATAAGTAAGGAAGACTGAGATCACTTCAAGTGATGTCCAGCTGTTTGCGCTCCATGGTGCCCTGAGTTAGTCCAGGTGACCAGCAGGCCCATCGGCGTGTTGCCTCCCAGTCGACACGAATTGGAAGCCGGTTCGATCGAGACTTAAGCGGCTGCGAGTGGCTTAAGCTGCGCGGAAGTCTTGCTAGGGACGATGACCAGGTCGATGGACTCGGAACCTCAGCCGCCTCCATCACATGCCCGGCGAACCATCCGCCACCCGGACACTCCGGCACGCCAGCAGCGAACAACCGACCAGCCAAGGCATCGCCCCGGTCGTACCGTAGGCTCGCCTCATGGCCAGCGCTTGGCAACTCAGATCCACATCTCAGAACGATAACGGCACCGCATAGCTGCAGGTCGCGAAGT # Right flank : C # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1420-479 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKZ01000526.1 Actinomadura geliboluensis strain A8036 NODE_701_length_5715_cov_7.2636, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 1419 29 100.0 32 ............................. CTCGCCCGCACCTCGGCACTGGCGGTCAGGTC 1358 29 100.0 32 ............................. TTCGTCACCGGCGCCAACGCCGCAGCTCGTTC 1297 29 100.0 32 ............................. TCCGATCGCGATGACGATCAGTCCGATGGGGG 1236 29 100.0 32 ............................. AACGGGCCCGCGGGCTTCGTCAAGGGCCTGCG 1175 29 100.0 32 ............................. CTGGTGCTGCAGGGGTCACCGATCGTGGAGGC 1114 29 96.6 32 .......................A..... GCAACCGATGCGTGCCTGGCGTTCGCGCACAA G [1092] 1052 29 100.0 32 ............................. ACCGCCCCGGAGTGGGGCAACTCGGGCGCGGC 991 29 93.1 32 T.......T.................... CGATCGGCGACCCCGGCACCGTCGGCGTGGGC 930 29 100.0 32 ............................. ATGGCCAAGGCCATCGGCTCGGTGTCGGGGGC 869 29 96.6 32 ...............A............. GGCGTCCGCTGGGATGACCTCCAGGCCGCCAA G [847] 807 29 100.0 32 ............................. CGCTCAATCTTGTCACGGGCTCTCAGTCCGTC 746 28 93.1 32 .................C......-.... GTCAAGCAGGACGAATACGTCGCTCTGCACTG 686 29 89.7 32 ..............G...........TT. GTGCCGTCGATGCGGGACAGGGTCTTGGCGGC 625 29 89.7 89 .......T....T........A....... TGCGCCAGCTCGCCGGCCTTCAGCCGCCGGTCGTTCTCCCGCGCAAGCGGGGGGCCAGTCACCAACGTCAGCGGCCAGTTCGGGTGGCG 507 28 86.2 0 ....A...G.....G..........-... | C [486] ========== ====== ====== ====== ============================= ========================================================================================= ================== 15 29 96.3 36 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GATCCACACCTTCCGCAACAGCGACCCGATCGCTGGCTACGCACTCTTCCGGGCCCGCCTCGGCCTCACCGTCACCACCCTCGCGAGCAACGGCATCCCTTCCCAAGCACCCGCGTTGCTGCAACAGGTCGCGGCTGAAGCAGCCAGTTCAGGCGACGGATACGCCGCACGAGCCGTCCTGCACGCCCGCATCCCCGGCCTCGTCCTGCCCGCACGTCGGCGTCGCACCCTTGCCAACCTGGTCACCTCGAGCGGCCTGGGCTCTGGGCCTCTACCCCAGCCACTCCAGACGGCCTTCGCCAACGCCACCACTACGGCGGTAAAGGTGCTGTCGGCATCACTCAGCACAGACATCTGTCGATGACGCAAGACGACTATCTGAAGCCGGTCGTTCGGCCCCGTTTCCTGTAGTCCCTTAGGCTTCACCTGTGGCGGTTGACCAGCACCAGGGCATTGATCTCAAATCGATAACGCCTTGACATGCGTGCAGGTCGCGAAGT # Right flank : GAACGACGTGGACTCTCACTGCCCATACGTGTAGTTCTCTCCATGCAAGCTCGATGCTGCTCGCCGCCAGACCGACAGTCGCCTTATCCCTGCCGATGTCGGGCTGCACGTCAAGCAGTCCACCATCAACGCCATCAAGGGCCGGCGACGTCAGCGACACATCTAATGCATCTGGCCTAGACCAGCCAAAACTGTCCCCCTTTGACGATGCCTACGTCCAGAAGATGGAGGCGACCAAGCATCCGGCCATCGTCATCGAAGCGGCGCACTGGCTGGCTCAGCAGGGGGAGATACCGCAAGGCCACGACACACAACGTCGTGCGCCAGCAGAGCTTCGCGGGCAGTCTGGTGGTGGAGCGCCCCGGGTTGGGTGGAGGCCCTGAAACCTGGAAGGGTGAGGGGCTATGGCACCCCCGAGAAAGTACTCCGTTGAGCTGCGTGAACGCGCGGTCCGTATGGTCTTTGAGCTGCGCGAGCAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.31, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //