Array 1 424784-425788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMS010000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 1731 NODE_2_length_696166_cov_29.1556, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 424784 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 424845 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 424906 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 424967 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 425028 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 425089 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 425150 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 425212 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 425273 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 425334 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 425395 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 425456 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 425517 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 425578 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 425639 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 425700 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 425761 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 442353-443846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMS010000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 1731 NODE_2_length_696166_cov_29.1556, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 442353 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 442414 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 442475 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 442536 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 442597 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 442658 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 442719 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 442780 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 442841 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 442902 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 442963 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 443024 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 443085 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 443146 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 443207 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 443268 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 443329 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 443390 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 443451 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 443512 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 443573 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 443634 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 443695 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 443756 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 443817 29 100.0 0 ............................. | A [443844] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //