Array 1 609417-606474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYU010000001.1 Listeria monocytogenes strain UTK_C1-0023-E1 NODE_1_length_726915_cov_66.059404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 609416 29 100.0 34 ............................. GTCGAAGGTGACACATGGTTTAAAATAGACGAAA 609353 29 100.0 34 ............................. TTTTTTGGTGGTTTGATATACGTTTCTTCTCCTT 609290 29 100.0 36 ............................. GTATCTATGCCACATAATAGCCCCACAATGTTGTCC 609225 29 100.0 36 ............................. AATTAAAGAGCAAACCTTTGACCCGGGGGGTGTCAC 609160 29 100.0 34 ............................. AATGAAGTGGAAGATCGTGTGATGTTACTGCAAA 609097 29 100.0 35 ............................. TTTTTTCTGCATTACATCCTGTCCAAAATGCCAGC 609033 29 100.0 34 ............................. TCATTAGAAGTAGCAAAAGAAATTAGTGATTATT 608970 29 100.0 37 ............................. ACCAATTATGTAGTTTGGGCTAAATCCGGATATTACG 608904 29 100.0 35 ............................. AAATTCCCAGCCTGCTTCCATGTAGACGAATCTAC 608840 29 100.0 37 ............................. CTTGACTTAGTTCTTTTGCTTCCAGTGCTGGTAAAAA 608774 29 100.0 38 ............................. AGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAA 608707 29 100.0 35 ............................. AAAATTAGCGTTCCAAAAATAAGACCTGTCGCAAC 608643 29 100.0 35 ............................. CCCGTATGGTAGAACTAAGAATACATGGGATGAAT 608579 29 100.0 34 ............................. ATACTAAAACTTCGCTCATTTTCCGCAACTCCTT 608516 29 100.0 35 ............................. GACTTCTAAGTTCATTCATTTTTAACTTCCTCCTC 608452 29 100.0 36 ............................. TCATAATAAGAATCAATTATTTTTCGCAAAGGTACT 608387 29 100.0 35 ............................. TTAAGAAATATGATTGATTCTCTGGATATCACTTT 608323 29 100.0 37 ............................. CCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGAC 608257 29 100.0 35 ............................. ACATTTTGCACGCACCAAGCTTGACGGTCTGAAAC 608193 29 100.0 35 ............................. TTTATCTTTATCTATTTCTCCAGTAATAGAGCACG 608129 29 100.0 34 ............................. ACATTTTTATCTGAGAAAGGGTTTAGGGAAAATT 608066 29 100.0 35 ............................. AAAAAAACAACTGCGCAAGAAGGGTATGAGCAATT 608002 29 100.0 36 ............................. GTTGGACACCGTCAGCAGAGCTTATAAATCCACTGT 607937 29 100.0 36 ............................. TTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTC 607872 29 100.0 38 ............................. TCAACTAACGAGGCAACAGGTGTTTTATAGCTGTAAAA 607805 29 100.0 36 ............................. TGGTAAATTTTATAGGAATGTCAACACCTTGAATTT 607740 29 100.0 37 ............................. AAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAA 607674 29 96.6 35 ..........T.................. AAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGA 607610 29 100.0 36 ............................. GCTGTACTAGCACTAGAATCAGCGGGATAACTGACA 607545 29 100.0 36 ............................. AACCACTCCATTCCAAAATTTATAAACCGCCGGAGA 607480 29 100.0 37 ............................. ACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCT 607414 29 100.0 36 ............................. GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT 607349 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 607283 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 607219 29 100.0 36 ............................. TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT 607154 29 100.0 36 ............................. TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG 607089 29 100.0 37 ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 607023 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT 606958 29 100.0 35 ............................. TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT 606894 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 606830 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 606765 29 100.0 36 ............................. AGAGAAATCTCAAGAGCCAGCCAAGCAAGAGACATC 606700 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 606635 29 100.0 37 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 606569 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 606503 29 93.1 0 .......................C....C | A [606478] ========== ====== ====== ====== ============================= ====================================== ================== 46 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCCACAACACCTAAACCAACAAAACCACAACCAATGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCCCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6807-5714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYU010000002.1 Listeria monocytogenes strain UTK_C1-0023-E1 NODE_2_length_486447_cov_81.087236, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6806 36 100.0 30 .................................... TCGATTAAACATTCTAGTGACAGAAGCGGG 6740 36 100.0 30 .................................... TCATTGACTTGTGTGTCTGTTAATCCTTCT 6674 36 100.0 30 .................................... GCAAATGATAAATAAAATTTCCAAAGCTTC 6608 36 100.0 30 .................................... GTTCAAACATTCTTTTAAAAGTATCTGCTA 6542 36 100.0 30 .................................... ATATGAAGTTATTAGCTGGGATTTATACAA 6476 36 97.2 30 ..........................A......... AACTTATAGTGACGTTGAGCTGGCAAAAGC 6410 36 100.0 30 .................................... TCTTTGGGATTTTTCTACAAATGTGTGTCC 6344 36 100.0 30 .................................... AAATTAAAGCGCAATTAGCGGCTAGGAATG 6278 36 100.0 30 .................................... GAAAACTTTGTGGATCGTGCAGAAAAAATA 6212 36 100.0 30 .................................... CAAGAAGAGGGAAAGCTTAAGTATCCATTT 6146 36 100.0 30 .................................... AAAAAAGTGTTTATTTACATCAAATTGTTC 6080 36 100.0 30 .................................... AGGGCAAAACACTTATGGACAAATAACATT 6014 36 100.0 30 .................................... ATATTGATGTAAAAGAAGTCCCGTCCACTT 5948 36 97.2 30 ......................G............. TAATAGCTGAACTCCGACCTGGATTAATGT 5882 36 100.0 30 .................................... AATGGACGGTGCTGTTGTTGTCACTGAAAA 5816 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 5752 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5717,5720,5725] ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAATGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGCGGTATATCTCTTTATATCAAGTCAAAGTTCTATTTATTGAACCTAGAAAGATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //