Array 1 108116-106093 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAL01000008.1 Salmonella enterica subsp. enterica serovar Oritamerin strain BCW_2753 NODE_8_length_170392_cov_3.49677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108115 29 100.0 32 ............................. CAGAAACTTAGACAAACTCAGGCTCCTGATTA 108054 29 100.0 32 ............................. ACCACTGTCCACAGTCTGTCGGCGAACTACCG 107993 29 100.0 32 ............................. GCACTGGCGCAGAATTACGCCAAATCGCAGGG 107932 29 100.0 32 ............................. CGCCCGCTGGTGGCAGCGTACCGCCGCCGGGA 107871 29 100.0 32 ............................. GCTTGGTAATTACTATGCCGAGCTTATCAAAC 107810 29 100.0 32 ............................. AATCCACATATGTGAAACTCCAAGGAGGTTTG 107749 29 100.0 32 ............................. GCCGTTACTGAGCGCAGCGGGTTAGAGGTAAA 107688 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 107626 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 107565 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 107504 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 107443 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 107382 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 107321 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 107260 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 107199 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 107138 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 107077 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 107016 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 106955 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 106894 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 106833 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 106772 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 106711 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 106650 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 106589 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 106528 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 106467 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 106406 29 100.0 11 ............................. CGGCCAGCCAT Deletion [106367] 106366 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 106305 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 106244 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 106183 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106122 29 93.1 0 A...........T................ | A [106095] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125403-124398 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAL01000008.1 Salmonella enterica subsp. enterica serovar Oritamerin strain BCW_2753 NODE_8_length_170392_cov_3.49677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125402 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 125341 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 125280 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 125219 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 125158 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 125097 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 125036 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 124975 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 124913 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 124852 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 124791 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 124730 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 124669 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 124608 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 124547 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 124486 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 124425 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //