Array 1 2850-3061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVDU01000224.1 Klebsiella variicola strain 521_SSON 4269_15297_158031_1358+,...,1782_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2850 28 100.0 33 ............................ CTGCAGCGGGACATCATTTAGCGTGATGACATC 2911 28 100.0 33 ............................ TGTTAAGCATGGTTTTGTCAGAGTATATGGACT 2972 28 89.3 33 ...........G..T..........G.. TAAAAAAGAAAAACTCTCCGGTTCCCTGTTCGG 3033 28 82.1 0 ......A.....C.T......C.....T | C [3054] ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTTGGCCAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCAGCGCAGGATAATAGCCTCCAGCTCCCGCTGCTGACCAGCATGTACCTCGGCGACTGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCATCAGTACGTCGCGCTACGTTCTGGGGATGACAAAAGCGTTTGGCGCCTGGCTATGGATCGGGCAGGCCAGTAGGGTAGGCCGGCCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAAGGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGTTTGATAAGGAAATTAAAATGAAAAGAGCCGAATTAGACGTTGTGGTTTTAGGTGAGGATTTACCGAATGAAGGGCTGGTAAAAGGAACGCTTGGTACGATTGTGATGGTTTTTAATACGCCAACAACTGGCTATCTGGTCGAGTTTTGCGACGAGAAAGGAAAAACAATCGCAATGCCAGTTTTATTCCCCGCCCAGCTAAAGCGCTATTTCACGATTGGTAACCTGAAGTCGCTGATGGTGGAAGGTAATTATCCCGTAGCCGACCCTGTAGACCCAGATGTCATGGCAGATTTAATGCACAAAGTCGCGCCTGTTGAATGGGAGGACAAGAAAAGAAGGGTCTATGAGGATATTCAACGACTATTGATTAGTCGGCCGGACTACGCGGATATGTTCAATATTATGGATGGGGGTGAGTACAATGGCATGACATTGTACAGCCTGGTGCAGGCAGAGAACGGTGAACCTGCATGGTCGAATATCTTTGTTCGAAA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1087-1351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVDU01000484.1 Klebsiella variicola strain 521_SSON 4542_1288_50189_3542+,...,3469_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================== ================== 1087 23 87.0 38 ..............TCA...... GAATACAGCAGCAGCTGACCAACTGACGGAAATCCAGC 1148 23 100.0 38 ....................... GAATACTCCGAGCTACCGATTTACCAGGAGAGCGCTCG 1209 23 95.7 37 ................A...... AATACGCCAAACGGGCATTTGAGTCGCGCCAGCCCAT 1269 23 91.3 37 ...............GA...... AATACTCAACAGGGATGTTTCGTCCGTTCAGACGCTG 1329 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ====================================== ================== 5 23 94.8 38 CCGATAACCCCCGCATGCGGGGG # Left flank : CAAAATTATTGATTGTTTTTAAAGCAGGAATGCCGCCCTACCTTAATCAACCAGAAATGCAGAGTTATAACGTCATACTTCCTTACCAGCTCAAGGCATGAATTTATCGACGTAAGGCCTTTGCTGATTGCAACCTGCAAGATTTGACAGAATGTGGGTTATCCTGAAGAAAGTAACTTTCCTTGATTGTAAAAAGTCCCATCTGCTTGTAGGGGCACATAACAAAAGCCCCACCATTGCGGTTTTTATGTCGATACCCCCGCATGCGGGGGGAATACTCATTACGGGTGTCCATTCGGATCTGGTAGTGCCGATAACCCCCGCATGCGGGGGGAATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATAACCCCCGCATGCGGGGGGAATACTTTAATCCACTGCCGGAAACAGGAGTCCGGAA # Right flank : GAATA # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATAACCCCCGCATGCGGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //