Array 1 236256-239706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALLY010000002.1 Clostridium perfringens strain CP-41 2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 236256 30 100.0 35 .............................. CCTGAATTTATTTTGTCTACTATTCTAGAATTCAA 236321 30 100.0 35 .............................. AGGTAGGTGGAATATATGACCAAAATAGGAATAAC 236386 30 100.0 35 .............................. ATTAACTGGCTTAATGGACACACTAAGCTTAAAAA 236451 30 100.0 35 .............................. GAAAAAGGATTAATAAAAAAATCTTTTACAACAAA 236516 30 100.0 35 .............................. CAGCTAATGGTTGTGTTATTTTTCTTAGTTTTTCT 236581 30 100.0 34 .............................. CAAAAAGTGTATGTCATTCATTTTCAGCACTTGA 236645 30 100.0 36 .............................. GCTTAGAAAAGAAAATGAAACACTAATAAAAAATTA 236711 30 100.0 36 .............................. GTCACCTCCCTCACTTAGATATTTGCAACAAAAATG 236777 30 100.0 35 .............................. TACCAGTTCGAGTTTGATTTTAAAACTTCTTTCGT 236842 30 100.0 36 .............................. TCAAGTTCTTTAGTCTGTAAATCAATAATTTTCAAT 236908 30 100.0 36 .............................. TGCAACATCAATTAGTAGAAATTCTTTTTCTGTATC 236974 30 100.0 35 .............................. ACTACTCATTATTATACCTCCTATATTGTTTCACG 237039 30 100.0 37 .............................. AGTATTTAGATAAAAGTTTATTACTAGCTTTATTATT 237106 30 100.0 35 .............................. TATGCATTAATTGACGGAAAAAGAGATATTGATAT 237171 30 100.0 34 .............................. CTTCATCAATATTTGTTTTTGATATTCTTTCAAG 237235 30 100.0 36 .............................. AAATGATTTAAAAACTATAAAAAATTCTATTAATAC 237301 30 100.0 36 .............................. AATCAACCAGGATATCAACTCGATTCCAGTTAGAAT 237367 30 100.0 36 .............................. ATTTCTACAAGTTGCCAACCATCTTGGGCAACTACT 237433 30 100.0 35 .............................. ACAAGAAGATAAAATTAGTATTTTAAGTAGTGGAG 237498 30 100.0 36 .............................. CTGGTTAATTGAAAGACAAAAAGGTATTGGTGGTTC 237564 30 100.0 37 .............................. ATATTATTGTTGTACATGTTGGAAACCAAGTGAACAA 237631 30 100.0 36 .............................. TGAATATGGTTTAGCAAATTTAGTCAACAAATTACT 237697 30 100.0 36 .............................. AGTTCTAATTTAACTATGCCTTCACAATTAACAAAT 237763 30 100.0 35 .............................. TACTAAAGAATTAGCATCAGAAATTAAAAAAGCTA 237828 30 100.0 36 .............................. CCAACGCTTATAGAATCAATTAAACTCATAACCTGT 237894 30 100.0 37 .............................. ATTTTTTTCTAATTGGATAGCACCACAACCAATTAAT 237961 30 100.0 35 .............................. ATTATCAAGTTCAAAACACTCAAACTCATCTTTAT 238026 30 100.0 36 .............................. CTACTCATTATTATACCTCCTTTAAATTGTTTCACG 238092 30 100.0 37 .............................. GGTTCGACGCATTAAAAACCCAGGCGCCATATTTACT 238159 30 100.0 36 .............................. CAAGGTTTACGCAATGTATGTTGACAATAGAATAAT 238225 30 100.0 36 .............................. CCTTTTTGCCCTTACTGGGGATGAAAAATTATCCTT 238291 30 100.0 37 .............................. TTTTTCCCGCTATTACCAGGTTGTTTTTTTCCATGTC 238358 30 100.0 36 .............................. GAACATTAAATATATTAAGAAGTGTTTCTTAAATGG 238424 30 100.0 37 .............................. ATTTTGTTGTATGCTATCTCCAAAACCTAACATACCG 238491 30 100.0 37 .............................. AAAGATCCTAATCCGTTTAATACATATTCACTCATTG 238558 30 100.0 37 .............................. GGGTATGCAATGGGAAAGAATATACTACACCTGAACA 238625 30 100.0 36 .............................. AGGAGAACGTAGAAGATAAGATAACTACAATGTTAG 238691 30 100.0 36 .............................. ACTGCTTCAACATTTTTGGGACTAATTACAAGACCT 238757 30 100.0 35 .............................. CTACCGATAATACTTCAATTAATAGGCTTATCAGA 238822 30 100.0 36 .............................. TTATACTCATGCATTCTCTTACTATCTATTTTTAAT 238888 30 100.0 34 .............................. CACCTAAAGCCCCAGTTAAAGCTAATCCAAAAAT 238952 30 100.0 36 .............................. CTCTAAGAAAACAATTAGGAGCTAAAAAAGATAAAA 239018 30 100.0 36 .............................. AACAGGACATTCTTTAGTTATGCAAATAGAATTAAG 239084 30 100.0 35 .............................. CCATAGATACAATGTGTTACTGAAACTTTAGTATC 239149 30 100.0 36 .............................. ACAACTCTCAGATTCTATTTAACTAATTTAAGTTTA 239215 30 100.0 36 .............................. AATGGTATTTTATAAAAATAATAGGAGGTAAAAAAA 239281 30 100.0 37 .............................. AGCATTGGCAAGTTCTACTGTATCTCTGCTATGATCC 239348 30 100.0 36 .............................. TTTTAGAGTAATTTCATCTTTAAGTAAATTAATTTC 239414 30 100.0 35 .............................. TTATTTTTTTCTTGTGCAAGTTTAATTGGATCTGC 239479 30 100.0 35 .............................. TTATTTTTTTCTTGTGCAAGTTTAATTGGATCTGC 239544 30 100.0 36 .............................. AATTCAATCTTTGGATGGTTCTGTTTATTTAAATCT 239610 30 100.0 37 .............................. TAGAAGCTACAAAAGCTTTTAATAAAGGCTCTAATGA 239677 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 53 30 100.0 36 ATTTAAATACATATCATGTTAAGGTTCAAT # Left flank : TTATATTTTTCAAATTATATTACTTTTGATTATATTACTAGCTTTTAACTCTATCATAATTCTTTATTATATAGATAATTAATAAAATAATAGAGTAAAATACTGAAATATTTTGAAATATGTAAAATGTACTTCCTTTTACCTTGTCCTTTTCATCAAATAAATATTAAACAGGCCAAAAAGAAATGAAACATAGAACTCCATAAATACTTATAAATGATCTTAATATAATATTCCAATTTTCTCCACACATCCATGCTAAGAGACAAAAACTTAAAAATAAAGCCATTCCAAGATTCATAACCCTTATAAAAATATTAGACTTTTCTATATCTTGCCACCACCAGAATTTCAAAATATTTTTTATAATAAAAGATAGTTTTTTCATATTATACCCCTACTTAATTATAAAACTTTATATAGAAAGACATTAAGTAATTATATTATACTGAAAAACAATATAAATTAGTTACTTAATTTTTAGTGAATTCAGTATTAAT # Right flank : TGCTTGTAAAATAGCCATTTTTAAATTTAATAAATATATCTTAATCTAGTTATTTCAATACTTATACTATAATTTTACCAGTGTTTTATTAAGAGTTAAAGAGGATATCGAAAATCAGTCTAAAACTTAGTTGTTTCAAGGGTTTCGCAAACTTTTTCCCACTTAAATCACTGGTAAAATTATATGTTATTTTGAATTAATTATTAAAGTATCAGTGTTTCCCCATTAATTACTTCTTGAATTCCTAGCACTTCTTCTCCAAATACATTTCCGTTTAATAATTTAACAATACATATGAAGTCTTCATCTTTTTCTATTACTTTATTTAAATCCTTTCTTAAGTTCATAAGATTAGCAGGGGTTATTTCTCCCCTAAAAACTGATTTTTGAAAATGAGATAAATACTTCTTACAAACTTTAAACACCCTATTTACCCTCTTTTCATTTACATCATAAAATACAAAAGCATAATTATAATTCATTTTACTTTTCATATCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATATCATGTTAAGGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [85.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 253658-249879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALLY010000002.1 Clostridium perfringens strain CP-41 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 253657 30 100.0 36 .............................. TGTTTATGGTCATTTCTATTTGTGACATCAGATACG 253591 30 100.0 37 .............................. AGAAAAGTGGCGAGAACATGGAGCCAGTAGGTGACGG 253524 30 100.0 37 .............................. TATGGTAAATATCTGTTTATAGAACACGCAGAAAATT 253457 30 100.0 35 .............................. TAATTATAATTTAGGAACTCGACCCCCTCTCTGTC 253392 30 100.0 36 .............................. GCGAGGAATTTGACGATAAGAACCCACCTACACCGG 253326 30 100.0 36 .............................. TGCGGATTATAAGAACCAGGTCGACGATAAAATAAA 253260 30 100.0 36 .............................. TTTGAGTTGATGGAATACGTACTACCACAGAGTAGG 253194 30 100.0 36 .............................. TTATTGAAGAGTTTTAACTTAGAGCATATAAAGACT 253128 30 100.0 35 .............................. TGCCCTATTTCTTCTCTTAAGTTTCTAAGAGCTTC 253063 30 100.0 37 .............................. AATGGAGAGTATGAATTTGATGGTTGTAAAGCTAAAA 252996 30 100.0 36 .............................. TTGGATACATATAATTGAATGATAACGGGTTTGGAA 252930 30 100.0 36 .............................. ATAGGCATTTTTTGAAATAACTCAATCATTTCACTC 252864 30 100.0 36 .............................. AAATAGTAATAAAAAAGAGTATGTTTAATGTTTAAC 252798 30 100.0 36 .............................. GCCTATCTTTTACTAACAATATAATTCAAAAGTAGT 252732 30 100.0 35 .............................. GGTAATTCCTTTCAATTAATAACTTTCAGGTAAAA 252667 30 100.0 36 .............................. AAGAAATTTCAGGTAAGGGAATGAGTGAGGTGGTTA 252601 30 100.0 35 .............................. CTAACATCCTCTAAGACTTTTACTAAGTCGGTAAT 252536 30 100.0 36 .............................. TAACCTCAACATGAAGTGGTCCATTTTCTCCTATAA 252470 30 100.0 36 .............................. CACGGAAACCAACTTATTTGTCCTATTTCCTGTAGC 252404 30 100.0 35 .............................. ACTAATTTAATCTCACCTTTAGAGTCTAAATACAT 252339 30 100.0 36 .............................. TAGATAAACTCATCGTCAAAACCGCTTTTGAACTGA 252273 30 100.0 36 .............................. TACCAACGTTAGTATTAGCGTTACTACTTGCAGCAG 252207 30 100.0 35 .............................. GATGGTGGAAGCTTAATATTTAAGGGGAGAGATGT 252142 30 100.0 35 .............................. AAACTTACTATAAATATTAATAAATTTATCCTATA 252077 30 100.0 35 .............................. ATACATTGAGCATCATAAAATTCAAATGCTTCTTT 252012 30 100.0 36 .............................. GTTAATAAAGAATGGTTTAAAGGAAAATAATGTTAT 251946 30 100.0 35 .............................. GCCTTTTTAAATAGATTTTTTAGAAAGGAATATCT 251881 30 100.0 34 .............................. TGTAATCTTTTAATTCTTTTTTTATCTCTGTTAG 251817 30 100.0 36 .............................. ATCTAAAGAAATGGTTGATATGAAAAAATTTTGGGA 251751 30 100.0 36 .............................. TCTGTCTAGCCTCTTGCTGCTCTATAGAAACAGGCA 251685 30 100.0 36 .............................. TAAAAACATTGAATATTAGAAGGTTTATTTGTAATA 251619 30 100.0 36 .............................. TTTAGAGCCACCCCCACTATACTTATTAGTAGTAGA 251553 30 100.0 36 .............................. CTATAGTTTATTGCAAAAGCGATTTCTTTCCAGCCT 251487 30 100.0 35 .............................. AGGAATATTTCTCCACCCCATCTATTTATAATTGT 251422 30 100.0 35 .............................. TAAAATTACACTCCATTCGACCAATTTATTAAATT 251357 30 100.0 36 .............................. TAAGTTTCTTCGCTTTCCATAAGAGAAGATATTATC 251291 30 100.0 36 .............................. CCATAATTATTTTTGTTTATTTTGGCTCCTTCTCCA 251225 30 100.0 36 .............................. CATGAAACATATCTAAAAAGGAACTATATCATCTTC 251159 30 100.0 34 .............................. TTGCTTAGCACCTTCTCTTTCTTCCTAATGGCTT 251095 30 100.0 36 .............................. AGATATAATATAGACAATGAAAATATTAGTAATGAT 251029 30 100.0 36 .............................. CATTTTGATTATTACTTTTTTCTTCAGCTCCACATC 250963 30 100.0 37 .............................. CTCGCAAAGAATTATAAAAGATTTGAAGTTTTGGGAA 250896 30 100.0 36 .............................. CCGTTGAACTCAAAGTCATTTAACATGATGTTGAAA 250830 30 100.0 36 .............................. CAAAGAAGGTAATAGATTTATAATAGACAGTATATA 250764 30 100.0 36 .............................. ATAAAAACGGAATAAAAAGACAAAACCCGCAAGATT 250698 30 100.0 36 .............................. GTTATATCCAGGTCATTTAAATTTATACCTGCGTTT 250632 30 100.0 35 .............................. TTGACTATTTTTAATGAATCTGATTTAGATAAAAT 250567 30 100.0 36 .............................. GCGTTAAGTTTTTATAAAAGGAATTATCCAGAGTAT 250501 30 100.0 36 .............................. TCTGTAAAGATAAGTTTATTATCTTCTATATTATTT 250435 30 100.0 35 .............................. TCTCCAATGGTTCTAACTGGTCCATCTTGAGTTAA 250370 30 100.0 35 .............................. ATATCAACTTCATGCTTTTTTACACTAGTTTTATC 250305 30 100.0 36 .............................. AGATGTTACTTAAAAAGAATTAGATATCTTTCGAAT 250239 30 100.0 36 .............................. TTTTTCTTATGCCATAATGCTATAAGCATATTTGAA 250173 30 100.0 36 .............................. GCTAATTATTCCAATGTATCTCTTTTTAAATCTGTC 250107 30 100.0 36 .............................. TTAAAAAAGAATATATTTTTATGCTGAGATTTACAA 250041 30 100.0 35 .............................. CTAAGAATGTGAAAATCTGTAGAATTTATTGCGGT 249976 30 93.3 36 ...............AG............. TGTTCTATGGCCTTTATTTCTATAAGTTTATCTATA 249910 30 90.0 0 ...A...C......G............... | TT [249883] ========== ====== ====== ====== ============================== ===================================== ================== 58 30 99.7 36 ATTGAACTTTAACATGATATGTATTTAAAT # Left flank : TAAACTTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTCTTTCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGTTACGGAACCCTAGAAAACTTTATATTATTAAACTTTAATTAACAAATTCAAAATTATAAATTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTGAATTTTAGTATTTAATTAATGTATTCTTAGAAATATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATTATATGAAATTACCATTTAGACCTTGAAATAACTAGATTATAAGTTGATTTTATATTAGTGCTTTAAATTAAAGTAAAACACTGGTAAAATAATAAGAGAGATATTGAAATAACTAACTTAAAGATAAATATCAAGAAAAAGAAATGGCTATTTTACAAGC # Right flank : AAGAACTTTAAATATTAAATTGTTGAAATAGGCATATTGCAATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAACATTTTATTAAATAATTAATATTACAAAAATGTATAAATTTATAAAATAATTATTTGTTTTATAAAATTTGTTGGGTAAAAATTATAATTATAACTATAATATGTAATATTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGATTAAAAGATAAATTTTGTAAAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCGTAGAGTATTTAAAGAATGTCTTTAATGCATAAAATATTTTAACCATAACATTAGATGTACTAAACAAAAGATAAACTAAATTATTTGATTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATACATTAGATTTATATAAGGAGGTGAGTATGGTGAAAGTTTTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 282475-286492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALLY010000002.1 Clostridium perfringens strain CP-41 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================================================================================== ================== 282475 29 93.1 38 A...........A................ AATCTTTCGAAACAATTTTTAATGGAAGTACAACTATG 282542 29 100.0 37 ............................. GGAAAAGGAAGGTGTAGGATTAGATGAAATAAAAGAG 282608 29 100.0 36 ............................. GAATATAGAAATGGATTAAGAAGACTTGTTTTAGGG A [282610] 282674 29 100.0 37 ............................. GAGTCGCTTTGGATGTAAAATCAAATGTGTTGCTTTG 282740 29 100.0 37 ............................. CAATCTTTTTTCTAATAGAAATCTGAGTTAATCCACG 282806 29 100.0 38 ............................. CTCTTCAAGAAAAAATAGAGCCAATAAATTCAAAATTG 282873 29 100.0 39 ............................. TTTATGAACACAAAAGAAGTTAACAAGAGTGGTATCATG 282941 29 96.6 37 ......................A...... TACTTGGACTCCTAACAATGGTAATATAGATTCTTTG 283007 29 100.0 37 ............................. ATGTTTCTTTTGCTCTTTTAATAATTCTAATGAACAG 283073 29 100.0 35 ............................. ATTATCTAAATATTCTAGCAACCTACTTGCATTTG 283137 29 100.0 35 ............................. CTACAAGAGTGTATTATTCTCCTTCAAAAATTAAG 283201 29 100.0 37 ............................. AATAGATTTCCCAATTGAAGAAGGAATTGTAGAATAG 283267 29 100.0 36 ............................. AGCTTCTTCTGGAATGGCCAATGTGGCTGGGGCTAG 283332 29 100.0 37 ............................. ATGAGAGTAGATGATTATGTGATGTCGTTTACTCCGG 283398 29 100.0 38 ............................. GGGAGAATAAATGTCTAATATAGAAAGAATAAACTTAG 283465 29 100.0 38 ............................. AAATTAACTATTTCAGATGGTTTTATAAATGATGCAAG 283532 29 100.0 36 ............................. ATATAAACCATCCAAAATAGCACTATTTATTTTTGG 283597 29 100.0 37 ............................. TCCCGCTATTCCTACGCCTTGGCTTTCTTTCTTAGTG 283663 29 100.0 37 ............................. TTTAGACTTAAAGCGTCCTCTTTCTTATAACTAACTG 283729 29 100.0 37 ............................. ACTCATTTTTACCCTCCTAAGCTTATTTTCACTCAAG 283795 29 100.0 37 ............................. TGTTATGAAACAGTATGGAGAATTTAAAGAGGACATG 283861 29 100.0 36 ............................. TTAAAACTACTTGTACCACTTATAGAATTTTCAAAG 283926 29 100.0 37 ............................. GAAACTATGCTACAACGACAGAGTTACCTTTTTAGAG 283992 29 100.0 38 ............................. CAACTTATTTTAATAAATTAGGCCCTGCACCATGTAGG 284059 29 100.0 224 ............................. CCTTGTAAAATAGCCATTTTAACTTATTAGATTTTTATCAAAACCTAGTTATTTCAATAAGTATATCATAAATTTACCAGTATTTCACGCTTTTTCAAAGTACTAAAATGAAATAATCTTTAAATCCTCTTATTTCAATGCTTAGATCATATTCTCACTATCTTTTTTACTGGTAAAATAATTAATACTAGAGCACTTAAATTTCATAATAATATTTAATTTCC 284312 29 75.9 26 .A.T....G....T..T.....A....C. CCAAAGTATCTCACTATAAGTTACAA C [284322] Deletion [284367] 284368 28 69.0 8 C.......-T.TTT.AAA........... AGCTTCTA Deletion [284404] 284404 29 69.0 38 .GG.G..TA..GTT.A............. TACCATATAAACAAGATAAAAAAGATATTTTAATCAAG 284471 29 93.1 37 ...........T.T............... TTTAAAAAATAATACTCTAATTAACAATAAATTAGTA 284537 29 82.8 5 ...........T.T...........AGG. TTCCA Deletion [284571] 284571 29 93.1 36 ...........T.T............... AAATTTACAGAGAAAGAGAAAGATCCTAACTTTTAA 284636 29 93.1 36 ...........T.T............... GTAGAGTTCCAGGAGGCTATAGGTAACATAATAGAA 284701 29 93.1 37 ...........T.T............... TTCAACATCTTGTGTTGTTAATTTGGATTTTAAAATA 284767 29 93.1 37 ...........T.T............... ATTACACCTTTATAATTACCATTCTCCACAATATTCA 284833 29 93.1 37 ...........T.T............... AATATCTTCAAACACCCTACAACTTGGCATTCCTCCA 284899 29 93.1 36 ...........T.T............... TAAATCTAAAGTAGCTGCTACCATTGCTGAGGCTAA 284964 29 93.1 35 ...........T.T............... CTATTTCCCCATTAATAAAGCTGGAAATTATTTGA 285028 29 93.1 37 ...........T.T............... AATATCTTTAAGTGAAGATAATAGAACAGGAGCTGGA 285094 29 93.1 37 ...........T.T............... ATCTATATTTTTATATTTGCTGCCTATCTCTATTAAA 285160 29 93.1 36 ...........T.T............... CCTACAACGCATGTTGTTATGTATATAGGTAATGAA 285225 29 93.1 37 ...........T.T............... TCAAATGGATGGCTTAGGTTTTAAAGGCGTTTTTGAA 285291 29 93.1 36 ...........T.T............... GATAAGATTAATGGTATGTATAAAACTGTTACGGCA 285356 29 93.1 37 ...........T.T............... TTTCCAACATAAAAATATATTAAAAGAATTAGAGTAA 285422 29 93.1 37 ...........T.T............... AATTTTATATTTTGGTGATGCTAGAAATAATAAAAAA 285488 29 93.1 36 ...........T.T............... GTAACGTCAAAGGTCATTCCCTTAGTTATTGACAAA 285553 29 93.1 37 ...........T.T............... CATACATACTCAGTTTTATTTGTGCCAATTTCTAATA 285619 29 93.1 37 ...........T.T............... TTTATACCTAATCAAATTAGTAATTTGAGCTATACTA 285685 29 89.7 36 ...........T.T........T...... ACGCTGAGGAAGAGGAGAACTTTTATGTTGCTCAAA 285750 29 93.1 37 ...........T.T............... TATAGTGTCTAAGGCTAAAGTTGACAGTATAACAGAA 285816 29 93.1 36 ...........T.T............... GCATCTTCTTCAATACTTCCAGTATCTCTTAAGTCA 285881 29 93.1 38 ...........T.T............... TTGCTGTTTTAGCTGATTCAACATTTTTAATTAATTCA 285948 29 93.1 227 ...........T.T............... ACTTGTAAAATAGCCATTTTAACTTATTAGATTTTTGCGAAAATCTAGATATTTCAATAGGTACATTATAATTTTACCAGTGTTTTGTAATTTTTTAAAGAGCTTAAATAAAACAGCCCTTAAACCCACTTATTTCAATGCTTATATCATATTCTCACTATCTTTTTCACTGGTAAAATAATTAATACTAGATCCCTTAAAAATTCATAATAATATTTAATTTCCTA 286204 28 75.9 37 ..A.T....-...TC.T.....A...... TCAAATGCTTGAAACTGCTAAGAAAAAAAGTTATATG 286269 29 93.1 37 ....................T.......T AGAAAGGCATTGACCTACGCCATATGTAGTAAATTTA 286335 29 89.7 36 ...........T.T......C........ GAATCCAATACAGAGAAAGAAAAGGGACAAGCTTCG 286400 29 86.2 35 ...........CTT......T........ AAGAATTTCGAAAAAGAAACTCTTTAACCAAAGCG 286464 29 86.2 0 ............T.......T.A..A... | ========== ====== ====== ====== ============================= =================================================================================================================================================================================================================================== ================== 57 29 94.0 42 TTTAAATACATACCATGTTAATGTTCAAC # Left flank : TTAAAAGCTCTAAGCCTGGATAGTCCTCTAAAATATTAAAACTTAAGCTTTTTATGAACTCCAAAGACTCCTCCTTGCTTTCAAAATAATAAATAGTTTTTCCTCCACCTCTTGTTATAAAATTTTCTTCCTTTAAGCCTTTATTATAATAATCCTCTGAAAAATCCTTAATAATAAGTGAAGCTCCTATAGCATCCTTAAGCTTATTGCTATTAAAAATGTATGTTTGCTTTTTACCTAACTCCCATAAAACTAAACTCCCCAAGGTGCGACACCTTCCTTCCATTTTTTGCTTGCAATAGTATTTTACCACAAATTATTATTATTAATAAATAATACTTTTTAAAACATATTTTAACAAATTAAAAAAATATCAGATAATCCTGTATAAACAAAATTATCTGATAAAAAAGGATATATGGATTTTTAACTTAACTTTAAGTAGATTTTAATATAGAAATTCTTAGATATATGATCTATTAATCTTCAAAAATAAAAAA # Right flank : CCTAGAGCAATAAGTCCAAAGAGAGATAAAATAGGTATATTTTAATTTTACCAGTATTTTATATTTTTTAAAATGTTTAGGTGATTGTATAAAGTAAGTTATAAAAAATAGATAGATCAAGGTGATCTACCTATTCTTCTTATATTTTATTGATGTTTTTGTAGTTTGTTAAAGTTATTTAGATAAATTTTGGTAGACAGTTTATAAATATATATTTTACATTTTAATCCAGATTAATTTTAGTCTATTTCCCTACAGCTTAAAACCCAGCAATTAAGTAATCTAACAGTCTGATATGTCTTTTTGATCTCATATTTAGTTCCATCAATCATGGCAATTACAGGTGAAGTTCTTTTAATAAACTCAAAGTCCAAGCCATCTTTTCCACAATATTTTGCAACTTCTAAACAAATATCCTCATCTGTTTTAGGTTCAACATCCAAATCAATTAAAAAGCCTTTTTTAAACATAAATTCTAATCCCCCTTAATAAAGTTAATT # Questionable array : NO Score: 4.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.72, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAATACATACCATGTTAATGTTCAAC # Alternate repeat : TTTAAATACATTCTATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //