Array 1 109193-108498 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUFM01000039.1 Lactiplantibacillus pentosus strain ATCC 8041 504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 109192 36 100.0 30 .................................... AAAATCATTTGTAAAGTTCAATGGCTTGTT 109126 36 100.0 30 .................................... GACGCTAACGATCGCCCAACTAAGGTATGG 109060 36 100.0 30 .................................... TTACCCGCTTGCATGGTACAATAGGAACAT 108994 36 100.0 30 .................................... GGCAGCGGACGGATGGTCTGCACCTGCGCT 108928 36 100.0 29 .................................... GGAACGATGGGGAAATAAAGGTTCGCGCC 108863 36 100.0 30 .................................... AAGAGTATCAGGATGCCCTAAAGACTGCTA 108797 36 100.0 30 .................................... TTTAAATTCTCCTTTATCTCTTATCGTTTT 108731 36 100.0 30 .................................... TTGCTGTTAAGCTAACTGGCGACATGAGCA 108665 36 100.0 30 .................................... TTCCCATATTTCCGTTCAAACAACGTAACT 108599 36 97.2 30 ...........C........................ CGAGCCAAACAAAATTTCGATGTTCAGCAA 108533 36 86.1 0 ...........C............T..AG.....G. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCCGTCTTGGATCAAAGCCGGGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTAGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGCTTTTGAACAGCAAGTGGCAGATTTAGGCACTACGGTTATTGTCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTAGATTATGTGAGAATGCCG # Right flank : ACTTTTCTTAGTATGTATTTGTACGCGCCTAGTCAAAGAAAGTCCGTTGTTAGATCTATATTTTAATCCTAGGGATATTTGACCGGGGGTCGCTAAGGGCTTAGCTCATACGAGTAAAATCAGATTGTCACTAGGTGGACGATAAATTCTTGCTTCGAGAAAAAGGTTTGGCATCTTTCTCGATAATCGATGTCTTCTGCAATGACATCTATGCTTAGGCGCATACAGGGAGATGTTCACAATGACGGTAAAAGTACAAAAACAAGGTCATTCACTAATGATTCCGATACCGGCAAACTTCCATGTTAAAGATAACGCGGAATATCAACCGGTTATGGATGACGACACCGGAATCTTATCGTTTATCCCAGTGCATGAAAATATCTTTGAACAAAATCCTGACTATGACTTTCAAACTGCGCTCAAAGAAATGAGTTTACCCGATAATGGGGAACTGGTTGATAAAGAAAACGTTTGGGAATGAATCAGAAGTAGCATCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 135447-136023 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUFM01000022.1 Lactiplantibacillus pentosus strain ATCC 8041 510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 135447 28 100.0 33 ............................ TGGATATTGGATTGCTACTGGTACTAGCGGCGA 135508 28 100.0 33 ............................ TTGTGCTAGCACGCAATTAATTAGTAGGTCTAA 135569 28 96.4 33 ..........................T. CTGCGTTGCCATTTTGGTGAAGTTTGCACTATT 135630 28 100.0 33 ............................ TCAAAATGCCTCAGCCACGGGCGGGAAATACTC 135691 28 96.4 33 ..A......................... TACTTGCTGTATTCAGACGTTTGCGCGTTCACA 135752 28 96.4 33 .................A.......... CAAAGTCGCTGATCGGTATGATACCAAAGCACT 135813 28 100.0 33 ............................ CGGGAGAACAAGCTTGGTATTACAAGAACATCG 135874 28 92.9 33 ..A............A............ TTAATGATGCGATATACGGGCAGCTTCACATTC 135935 28 89.3 33 ........T.......T.A......... TTAGTGACCGATTGACATTCCTATATTTGGAAC 135996 27 82.1 0 ..A............A......A.-..T | C [136018] ========== ====== ====== ====== ============================ ================================= ================== 10 28 95.3 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TATTAGACTGCCGGGGTATTTATAATTCATTGCACACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATTGATTTTTTAGAATTCTGGAGATAGGTCAAACATTCACGCCTATTAAACGTGGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGCTGATTTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TTGTACCGATTCATGACATAATCAGCATTGCTATTGTCTCTAACACATACAGGACTATTTCGGCATTTATACAGAGCGATGAACAGCATTATTTCATCAACAGGGCAATTTAACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTATGAATCAAACTTCCATTACACAAATAGTGTATCTCTCAGATGTGTTCTAAATTTTTAACTTTTCTACCTTACTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTTTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATGGGTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCCTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGCAT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 138642-139811 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUFM01000022.1 Lactiplantibacillus pentosus strain ATCC 8041 510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 138642 28 100.0 33 ............................ TGGTTACGATGATTTTATTACGAAATTAACGGC 138703 28 100.0 33 ............................ CGAATCGCGTCATGCATTTGACTAACTACGATA 138764 28 100.0 33 ............................ CATTCTTAAACAAATAACCGTTAGGAACTGCTT 138825 28 100.0 33 ............................ TAACGTCGGTGTCGACAAAGCTGAACGCTTGAC 138886 28 100.0 33 ............................ CTGGCTCAATGATTATTAAATTCAGGCATTACA 138947 28 100.0 33 ............................ TCATCAGGCCAATAGCGGCGTTAAGTGCCAACG 139008 28 100.0 33 ............................ CACGAACAACCAGCCGCAGTATGACCCTGAGGA 139069 28 100.0 34 ............................ CTTTTTGGCAAAACAAAAACCCACCATATCAATG 139131 28 100.0 33 ............................ CATGTGGTTGGCTGTCTCAAAAGATAAGTATTT 139192 28 100.0 33 ............................ TGTTCGAAACGGCATGAGTTTGACTGGATTAGG 139253 28 100.0 33 ............................ TAAGGGCTTAACGGGTTTTGCAGATTCTCAATC 139314 28 100.0 33 ............................ CAAGGAGCGCATGGAGTGGATAAAGTTTTTTAC 139375 27 92.9 137 ..A..............-.......... TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTTGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAACAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 139539 28 85.7 33 ..A.......T.C..A............ CAACAAGCCCTAATAACACAAGTACCCGGTTCG 139600 28 85.7 33 ..A.......T.C..A............ CAACAAGCCCTAATAACACAAGTACCCGGTTCG 139661 28 85.7 33 ..A.......T.C..A............ CTCGGTACCATCCGTTACATCAATGACGACAGG 139722 28 85.7 34 ..A.......T.C..A............ CCTCTAATTCATTGTTTACAATCAGCCACTCATA 139784 28 85.7 0 ..A.......T...............TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 18 28 95.6 39 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTTGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATTTAGGCTTCACAATTATTAAGCGCTTACATTTTATTAAGAACATTGCTGACAATCCTGAATTATACTGACAAGAGATCATCGACTTTCATCCGTATATTTTCGTCAGAACCCTAAACTGCTTGTAAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTGATTCTATACTTCTAATATTAGCATTCAGTGTTTGAATATACATCTATTTTCGGAAGGACTTTGATGGATTTTTGATAAATTATGACGACTAGTTTGTGTCAAGACAGTCTGATATGTCCAGTCTTGGAGTTTCCCTATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGATACTTAGCCAATTTTGGATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : TTTATACAGTTTTTAGGAGGACAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATATCCCGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTGAAAATTAGCAGAATTATCTGGGAAAACTCAGTTTTTGATACAGCAAAAATGCGCGTGTTTACAACATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATAGAGAAGAACATTCTGAATTTATTTTTGTAAATTCACGGCAAACTTTGAATAAAGTAAAGGTTGTACCGTATTTAGAGAAAGTACTGTTGCAGTTTCTATAGATTAGGGAGGGTTGTACGGTGATAACTATACTTGAATACGCATAGAAAGAATTTATA # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTATTCCCCGTGCATACGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65692-66025 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUFM01000024.1 Lactiplantibacillus pentosus strain ATCC 8041 511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 65692 28 100.0 33 ............................ CGAATAACAATCCCGCGCCAAAAAGGAACGCTC 65753 28 100.0 33 ............................ TTGTTACCCGCCCGATACCGGTCAACATATTTT 65814 28 100.0 33 ............................ TGTTGTCGGCGGATGTTCCGCCGATTCGTGCAT 65875 28 100.0 33 ............................ TTACATTGGACTTCGCATCGTTGGTCTTGTCAT 65936 28 89.3 34 ....G.....C......A.......... CCTATTTCCACAATCAAATTCATCTACTAGATGA 65998 28 92.9 0 ..........C....T............ | ========== ====== ====== ====== ============================ ================================== ================== 6 28 97.0 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TCGCTTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACTCGAACAGACATTGAATTTTTGGCAAAATTGCCACTGTTTGATGGAAATAGCTCAGAATAATATAACTAGTAGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGATGATTTTATAGCCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTTGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTAATGTAAAAACTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAGTAAAACATAAAACATTATTATCTTAGACCACTTAAATCTGCTTAAATCTGCGCAGGTGTCCTACAACAAATCAGCTGGTTCCGGTTAAAATTAATGTTCATGCAGCAACCACCCCTCTCCAACACACACAGAATATTCAGAAAGTACGGCTCTTGTCGTCCCCACCGCTCACAGTCATTCGCAAGCTCGGCGCAAGGTAAATTAAATTAGAATCTAGAGCAAAAAAAGCCGCCATATCCGAAGATATGACGACTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCCTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //