Array 1 843897-846955 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043765.1 Salmonella enterica subsp. enterica serovar Dessau strain KUFSE-SAL0043 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 843897 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 843958 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 844019 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 844080 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 844141 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 844202 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 844263 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 844324 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 844385 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 844446 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 844507 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 844568 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 844629 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 844690 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 844751 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 844812 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 844873 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 844934 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 844995 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 845056 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 845117 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 845178 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC 845239 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [845259] Deletion [845279] 845281 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 845342 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 845403 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 845464 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 845525 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 845586 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 845647 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 845708 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 845769 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 845830 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 845891 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 845952 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 846013 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 846074 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 846135 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 846196 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 846257 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 846318 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 846379 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 846440 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 846501 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 846562 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 846623 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 846684 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 846745 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 846806 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 846867 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 846928 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 51 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 863501-865910 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043765.1 Salmonella enterica subsp. enterica serovar Dessau strain KUFSE-SAL0043 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 863501 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 863562 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 863623 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 863684 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 863745 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 863806 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 863867 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 863928 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 863989 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 864050 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 864111 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 864172 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 864233 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 864294 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 864355 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 864416 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 864477 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 864538 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 864599 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 864660 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 864721 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 864782 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 864843 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 864904 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 864965 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 865026 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 865088 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 865149 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 865210 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 865271 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 865332 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 865393 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 865454 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 865515 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 865576 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 865637 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 865698 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 865759 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 865820 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 865881 29 100.0 0 ............................. | A [865908] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //