Array 1 166283-165704 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOYT01000042.1 Salmonella enterica subsp. enterica serovar Muenchen str. baa1674 strain ATCC BAA-1674 SEEM1674_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166282 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 166221 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 166160 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 166099 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 166038 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 165977 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 165916 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 165855 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 165794 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 165733 29 100.0 0 ............................. | A [165706] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGCGCTCAGAATAATAGCGCTACCGCCCTGGGCGGCATGGAAGCGCAATAAACCTTCCAGCAATTTAACCATATAACCATCATAGGCGTGCACTTCATCCAGCAGCAGGATTTTGTCGCGCATCCCTAGCAATCGGAGCGATTGATGGCGAAAAGGCATCACCGCCATTAAGAGTTGATCCAGCGTACCTACGCCGACTTCCGCCAGCAGCGCTTTTTTGCGTGAATCTGCAAACCAGGTATGGCACTCAGTAGTCGCGTTGCCATCATCACGGGCATAATCTTCAGCTATATTTTCTGTTGGCTGCCAGATGGATTGTCGGAAAGAGTCCGACATTTCTCGCCCACCGTGTGCCAGGATGAGCGATGGCCTGGACTCATCGGTAAATAGCGCATGATAAGCCGATGCCAGGCGCTGATACATGGCGTTTGCGGTGGCCATTGTCGGCAACCCAACGTAGAGACCGTGGCCTTTATTGGCTGACATTAAGCGGTGAGTC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 176606-175664 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOYT01000042.1 Salmonella enterica subsp. enterica serovar Muenchen str. baa1674 strain ATCC BAA-1674 SEEM1674_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 176605 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 176544 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 176483 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 176422 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 176361 29 100.0 32 ............................. CCTCAATTTTGTCTTCACCCAGCCATATTTGC 176300 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 176239 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 176178 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 176117 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 176056 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 175995 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 175934 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 175873 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 175812 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 175751 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 175691 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //