Array 1 14069-13314 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWL02000052.1 Leptospira kirschneri str. 200801774 ctg7180000004383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 14068 36 100.0 34 .................................... GACATCGAGGTTGAGATCCCCGAGTACGGTAAGC 13998 36 100.0 37 .................................... GGGACTAGCGTGGAGCCTGTTCGGATGGTCCTCGATT 13925 36 100.0 35 .................................... GAGTATTCTGTTTATATCGAGGAAAAATTAATGCG 13854 36 100.0 36 .................................... ACAACGTTACTGGGAGTTATATTGAGTATTGTGTTA 13782 36 100.0 35 .................................... AGGTAAACGAAAGCGCGGACGTAGTGAATGTTCGC 13711 36 100.0 38 .................................... TCTAAAAGGTAGTGGACTACGTGCTCGTCCTCATGGGT 13637 36 100.0 35 .................................... CGTAGCATGGACAATTTATGAAATAAAAAATGATT 13566 36 100.0 38 .................................... GAAAGAAGCCTCCGGAATATGCGGACTCTATTGCATCA 13492 36 97.2 34 .....................C.............. ATTGCTAAAGCTTTACGAAAACCATTGTATTTCA 13422 36 100.0 37 .................................... CAAGTAGTCGTTAGATCACCGTTATGTATTAAAAATG 13349 36 83.3 0 .............................CATAAC. | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 98.2 36 CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : AATTGGCTAAAGTTATCGAAAAAGAAGACGACGTATTTTACCTGACTCTTTGCGCTAAATGTGCCTCCGGAGCTCACACCCAAGAGAAAAAATCGGCCTGGCCAGAGGCTCCCAAAACACTCAAAATTCTATAATTCAAGTATCTATTTATGGCATAGACATAATTCCCTTTTTTTAGCATCAAAATTAGCGTCTTAGTCCAAACATAACTTCGTATTCGTCCATCTTTATAGAGATTCAGAAATAACCGCATTCTAATAGGAGTTAGTTGAAGTTATTTTCTTTCTTGCGAAAATTCTGGTCCAATTTATTATCAAATACGGATCAGAACATACTTGAATTGCTATTTCCTAATCGTAAAGGCGGATTGACTCAAAATATAATTTATTAAAGAAATTCGAAATGAAAAAAAGTTATAAAAAGCAATATTCTTGTTCACCCTCTATAATTTCCTTTGTATCGACAATCTCTACACCTAAAAGCTATAAGATTAAAATGCT # Right flank : TTACCCACAAGTTGAATAGGATTTTAGAATAAGAAGGCTCAAAAACGCACATTTTTCAAGTGTTCCGACAAGAATGAGTCTTTTTACTTGCAAAAAGCATGTTTTTCTGATAGAGAAAAATCTTCCGAATTTCTCCACCTCCGCCCCCACCCAAAAATAAGGGCGGGAACTCAGTTTTACAGAGGATTTGTCGTAATTCCCACAAGATTTAATATTGAAATCTAAATACTTGTGGGTAAGGTTATGGTAAGGCGTTGAGCACGTCAGAAGTAGTTCCATAATCCTCTTGGTTGCGGCTACTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCACCGTAAAGCCGCGTCGGCCTTTGGAATGTCAGAAGACTGAACTTAACTTTGATGCCGTTAGGCGCTAAGCACAAAAGGACAGAAAAATCGGCCGATGCGAAAGCGATCTCCTGCAATGCAACATGATTTCACTATAAATATTCGAATATACTGAATTTATAACATG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 49247-49424 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWL02000027.1 Leptospira kirschneri str. 200801774 ctg7180000004407, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 49247 37 100.0 33 ..................................... CATGCAGGGCAATCGTATGCGGAAAAGGGGATC 49317 37 100.0 34 ..................................... TAAATGCGTCAGCGCTGACGCATTTATTTGGTCT 49388 37 67.6 0 ............A..TA.....A...AAACAAA...G | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 89.2 34 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGCTCCCACATTTAAATACTACAGATTCAAGTATTATAAAATTCTATTTTTTAAATTGTGAGAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTATTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACAGGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTCGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGCTATTAACCTTTTTCTTATACATTTTTGCGGGGCTTTTGAGCCGCT # Right flank : GAAATATGATTCATTCCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGATAGGCCTTTGTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTAAGTTTCAAATGAAAGTATGAAATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGTGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAAATTCTAGTTACGCACATTCCACATAACGACCTTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTGTTTTTCCTCCATTGGATTCCTATTATTTTTAATAGGAAGTGGCTTAGGCTCCCAAGAAACAAAATCCTGTTTTACTTCTTACCCAGAA # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.46, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 210156-210336 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWL02000027.1 Leptospira kirschneri str. 200801774 ctg7180000004407, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 210156 37 100.0 34 ..................................... CTCTTCTGTTTGGAACCTAGCTCTATGAGTTATT 210227 37 100.0 35 ..................................... ACGGCCTCTTTGATTTTGTTGACCGCTCCGGCATC 210299 36 75.7 0 .........................T.TT..GTGGG- | CT [210323] Deletion [210335] ========== ====== ====== ====== ===================================== =================================== ================== 3 37 91.9 34 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : CCATGGTTCTTATTCAGAACCATACAATCAATTTCCCAGTATTTTAGGGTTTTGCAGTAAAACTTACGGCTCTCCATTTTTTAGAACTAAAGCAGAATGCTCTTTATTGGATTGGGTTCTTTTATGTAGTCATAAAGTAAGAGAAAAATTCCATACTCTATAAAATGAGTTATTGAGACCGAATTTTTACTAAACGTTTAAATCAATCTTCTGAAAATTCATTCCTAGATATCCATCTACTTAGACTTAAAACTAAAGAATTTATAGTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATGAAGCGCTTTTTGCGAACCTGTTTCTCCCGATCAATTGCGGCCCATTCGCACTCAAACGAATAACCACCGTTTAGCGATTGAACAGTTTTGCTTAACGTTTATACAGTATGGCGTCAGTAGGTTCGCGATAATTATGTCTAGAGAAACTAATAAATCTTTTCCTAATACATCAATTAGAGACTGTGCAGCCGCT # Right flank : GATCGATTCCTAAGACATGCGTTTCTTCTTTTATTTAACATAAGTTCGATTTAGAACTTTCTGAATTTATCTATAAAAATCACAGATTGTATAAATTCCGATATTCAGCTTTTTATGATAAATTTCAGGTTTATAAAATGAATTGATTCAATCCAAGTTCTTTAAAACTACAGCAAATCTTTATTTAAGGAAAGGATACAAAAGACCGAAAACGGCAAAATCTCTAGGCTTTCTTCTTCTTGGAAAACAATTGTTAATTAATATTTTAGAGAATTACAATATACTTGATTAGAATTTCTAGAAATTTTTATTTTACCGCTCTATACTCAAAACATACCACAACTCAATTTTCTCCAGTTAACTTACAGGTGTCTCAAAACCAAATCGCACTTTATTAGAAAGATCAAGCTGGATAACGAAAGTGCATCACTTCTATTGGCGCTCGACAGATTCTTATTATATTAAATCACGTTATCGCAAGGTTTTATTCTTTACCTTGA # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 131294-130899 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWL02000011.1 Leptospira kirschneri str. 200801774 ctg7180000004380, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 131293 37 100.0 33 ..................................... CGAAACTCCTTTGTTTAAAAGCTTCTTAGTGTC 131223 37 100.0 37 ..................................... CTCTAATAGACTTAGGGCATTGACAATTGCAACACGA 131149 37 100.0 33 ..................................... TTCTTTGCCTTACTCCGAAATTTCTTTGGATTT 131079 37 100.0 35 ..................................... AATTCTACCTCGAAATTAAGATATTTTTAATGGAT 131007 37 100.0 35 ..................................... AGTTATTAACGAATTCAACAAGATAATCAGATCGT 130935 37 97.3 0 ..........................C.......... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.5 35 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : CTACTTCGATAAGCATATATTCTGAAATACAATCCATTTAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAATAAGGCTCTACAAATTTTAGAAACAGATTTAGTTTAGACAAAATTCTATACGCTCTGATTCTATGATTTCTGAATTAGTTAAGTTTTCAAGTCCAGCGCTTGGACAATCATCTCAACAAGAATGAAAGAACCCTTGAGTTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAAACGCTTTTTGCGAACCTGTTTCTCCCGATCTTTTGCGGCCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTGGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TATGTGGGCGGTCTTACGACCATATTTGCCTACTCCATTAGAATGGAAACGACAAGCTTTGTGACATATTTAACTAATTTTAATTTTTTCTTTTTAGCAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGACCTTTCTTTCTCTATCGAAGAGAACGTAGGTTGAAATTACCACGGTCTTACGACCACATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTTTAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGGTTTGAGACGCAGAAATTCCCAAAAATCAAGTCGGCCCGGATTATTTAACTTTTTGTGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACGTTATGCGAAATTAATCGACGCGGGGAACTTTAGCAGAACGCTCTTTCAAACCAAAGCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 3431-3037 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWL02000004.1 Leptospira kirschneri str. 200801774 ctg7180000004371, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 3430 35 100.0 35 ................................... TTCTTTTCCTGTAATCCTATTGATGACGGACTTGA 3360 35 100.0 38 ................................... TTTATGCCAACGGGTCGGAACTATCAGGACCACCTGAT 3287 35 100.0 37 ................................... ACTAGGAATCATTTTGAGAGCGGGGACGCGACGGAAA 3215 35 100.0 35 ................................... ACTCAATGCTCTCGTTGTAAGACGTATCATTCTAA 3145 35 97.1 37 ..........................T........ ACTTTGGTTTCTTAGAAGAACCACAGAAGAGACGAAT 3073 35 82.9 0 .............G...G..G....C....A.A.. | TT [3045] ========== ====== ====== ====== =================================== ====================================== ================== 6 35 96.7 37 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAA # Left flank : TTATAGAGAATTTTACTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTGCTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGGCCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTGGCTTAACAATTGTACAGTATGGTGAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : GTGTTTAAAATTTTGTTCCTGAAACGAAGATTCTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGGATTGATTGCTTGGAACAATGATTTCTAAGTTTTGTGAGAGTTCACACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATTTTTCTAAGAATAGGAGTTCCTTTTTATTTTTACGGACTCAAGTTTCTCTTTCGGAGAATGCCTGGTTTGGTAAATTCTACCGTGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAGATTAAGTCTCTTTGTGAAGTTTATAGATTTATAAATCGTATTTTCATTGTTAAATTCAGTGGTAGTTCCCACAAATTAAATCACATTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTAATAAAATTAGGGCGAATCCGGCTTGCCACTGG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 97106-97501 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWL02000049.1 Leptospira kirschneri str. 200801774 ctg7180000004411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 97106 37 100.0 37 ..................................... TTTGGTATTTCAAAATTCCTGGTGCCCGTGACGACAA 97180 37 100.0 35 ..................................... TTGTTTGTGCGCGGCCATCCCGGTTTGTTGGGGAG 97252 37 100.0 33 ..................................... TTGTTGGGGTATTCGGTTTTTTTGCAGGTAGGA 97322 37 100.0 35 ..................................... CCGTCATTCCAGCGGAAACAAATTCGGATCGGACC 97394 37 100.0 34 ..................................... TTGTCATAAATTCGGACAAAACAATTACTTTTGC 97465 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 100.0 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : TGATTCCGAAGATGCACGTAAAAAAAATAGAAGGGTCAATTTTACCATTCTGAAGAAAAGTAAGTAAAACTTTTCTATATTTTAGATATTTAATAGAGTTGTTGAAAAATTCCATAGTGGCGATTCGTAAAATTGCTTCAATTGTCCATTCCAATCAGATCAAGAATTAATTTTCCAACAACTCTATAATTCAAAATACGAAACACAGTGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAACCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCT # Right flank : CGTTTTGTAACCATTCACCGGATATACCGAGAATGAGTTCTTTCTCTTCTTTTAAAGAAGAGAAAGAACAAGCCAAAGCCAATCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCTTCTGAACTTGAAAAGAATGAGTTCGGCCGAGAAAAAATTCTCTAAAAGTATGATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATCGATCTGTAAAGTTCAGATTTCAACTTTTTTCAGAAAAATGAATCATGTTCAAACTCACGTTAGTATAAAATCAATTTTAAGGTAAATCCCCACTTTGTAACATGAACAAAAAAGTGTAATCAGACACATGAAAATAATACGATTCTAATATTTCTTTCAAAACTTAAAATGTGGGAACTAACACAAAACAAGCATAAATTACGGAACAACACAAATTATAAGAGCTTTTACACTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 40859-39964 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWL02000005.1 Leptospira kirschneri str. 200801774 ctg7180000004391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 40858 37 100.0 35 ..................................... ATTTGATCAGCAATACTCCATTCTTATTTTCGATT 40786 37 100.0 34 ..................................... TAAAAATGCAATGAAGATGCCTAAGATGGAGCGT 40715 37 100.0 34 ..................................... AACTAGTACAAGTAAAAAAATTAGGTAGGATAGA 40644 37 100.0 34 ..................................... CTCTTGGCTTTTGGGTGCCACCCTTTGATATATT 40573 37 100.0 36 ..................................... ATCAATGGCTCTATCTATTCGAAAAAAAATACTCGT 40500 37 100.0 33 ..................................... AGTATTCACAAAATCAGAAAATGGCGACTCAAC 40430 37 97.3 34 ................G.................... CTCTGGATACATTGCAGATTCGTCCAACGCCATA 40359 37 100.0 36 ..................................... TTTTTGGATCTCTAATAATCTCAGTTTTTAATTCCT 40286 37 97.3 34 ................G.................... TGTCACCCATGTCCATGCGGAAACCGCCGCCGTT 40215 37 100.0 35 ..................................... AAGAAACGAAAATGGCATTGGTTGAAAACCACCCT 40143 37 97.3 34 ................G.................... TTCCGCGTAATCGCTTGATATATAACGTCGTAAC 40072 37 100.0 35 ..................................... TGTAACCATAACTCTGCTCCTCAGTCCCAACCCGA 40000 36 86.5 0 ...........................T.-.CA...A | G [39974] ========== ====== ====== ====== ===================================== ==================================== ================== 13 37 98.3 35 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTAGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTGCGGCCGGTTCGCGTTTAAACCTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAAAGCTTTTTCTAATCCATAAATTTGCACCTTTTCGGCCGCT # Right flank : AACGATTTATTTAAAAAAAAATTTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTTAATAAACCATTGTTAAACTTTACAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTAAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAACG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 24230-24558 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWL02000048.1 Leptospira kirschneri str. 200801774 ctg7180000004399, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 24230 37 100.0 33 ..................................... AGCGATTGTTTTGCCACGATTAAAGTTAGAAAC 24300 37 100.0 34 ..................................... CCATCTCCACCCACACGCCAGGATTTTTATAAGC 24371 37 100.0 35 ..................................... CAGGCGGACATGGACCCGGACGTTGAACAAGAATT 24443 37 100.0 36 ..................................... CATTTTCGAATTCTTCCATAACTGCATTTTGGAAGG 24516 37 94.6 0 ..........................A........G. | AA,ACAA [24542,24547] ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 98.9 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : AAGGATCGATGCGATAGGAACTTTAGCAAAACACTCTTTCAAACTAAAACGTCTCACTGTTCGACAGGCTCATATACTACATTGGATTATACAGAACTCTCCTAACCGACGCTTTATAACAACATTTACCGAGGTTCAATTTTATGGGATGAGTAAAACATATATTCTAGCAACAAACATAATTCAAAATTAAAAATACGAAACACAGTAGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCGACCTATCAAGCCGCT # Right flank : CCAATCTAGAATAAAGTTGTTGAAAAATGAATTCTTGATCTGTTTCTATTTCATGGAAACGAGCAATTGAAATAGTTTTGTTAAACGCCACTATGGAATTTTTTTCAACAACTATAATTTTGAAAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATGTAGGAACTACTGCAAAATTTCGTTCGGAAAAGTATGATTTAAAATCGCAAAAAAGATAAAAAGAGACGTAATCTGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTATCGTATTCAAGTGTGGAACTACTGGTAAATCCACGATTTGTATGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTAGCTTCTATCCTCTGGACGCGAAATCGATACGAGGGAACTTTAGCAGAACGTTCTCTCAAATAAAAGACGAGATATTGTATTAGGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGCACGGTCCTGCAAAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //