Array 1 103628-104266 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040417.1 Dolosigranulum pigrum strain KPL3077 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 103628 28 100.0 33 ............................ CGATTAATTAAGACGGAAGAACGTCGGATTATA 103689 28 100.0 33 ............................ CCAATGCAGCCATTTCAGCCATTATCTCTAACC 103750 28 100.0 33 ............................ TCACGTGATTGATGCTAGTCGGTATGCACTACA 103811 28 100.0 33 ............................ CAGCTTCTTCGACTAGGCCTTGTGCCCAGTCTG 103872 28 100.0 33 ............................ TGCTATAATTCTCGGGTTAATTGGGTTCTTAGG 103933 28 100.0 33 ............................ CAAGAAATGATGACATCAGCACACCAAATCGCA 103994 28 100.0 34 ............................ CCGGGCTGTAGCCTGTGTCACGTTTACTTGATGA 104056 28 100.0 33 ............................ TGATGATCATATGCGACTTGTATCGTTGAATAA 104117 28 100.0 33 ............................ TGCAACGGGGGTGATTGATCCGATTACGGGTTT 104178 28 100.0 33 ............................ TAGACGAATTCCAGTCCAGCGCTCCACTGTGTT 104239 28 85.7 0 ....................A..A.A.T | ========== ====== ====== ====== ============================ ================================== ================== 11 28 98.7 33 GTCTTTCCCGCACACGCGGGGGTGATCC # Left flank : GATATTGTAAATGACCATATAATCGAGATAGGTGCCTATAAAGAAGTAAACGGTGTACCATTTACTTACCAATCATTAGTTAAGACTGATAGACGGTTAAGTAAATCCATTACACAATTAACAGGATTAAGTGACGGTGATTTAAAAAATGGTCAGAGTTTAGAAAAAGCTTTAATAGGATTAGTAGATTTCATAGGAAACTTACCAATAGTTGGATATAATGTTTATTTTGATTTAAAGTTTATAAATAGAGATTTAAAAAAGCTATCTTACGGTACACTTGGTAATGATGTGGTGGATATAATGGAATTTGTCAAAAAAGATAAACAATATGTTTCAGGTTATAAATTGAATGATGTGTTGAAAGAATATGGGATTGAAAATATGCAGCCACATAGAGCACTAGAAGATGCTAAGAGCACATACTTGCTTTCTAAAAAACTAAATGAATTTGTGAGGATTATAAATCAAAAATAGCATAACCAAGGGGATCTTTTAAT # Right flank : TTTCTGAGTACAAAAAGTTTTTTTCAGTTTTTAAAGCTGATGTAATATACACTCACAAAGTTGGAGTTTTTATATTGATGATTAAGCATGAGATTGAGTGGTTTATTAGGGTAATTGATTGTAGATTGTTCCTTCCATTTTTCTAGATAATACTAGTTTGCTGGTGGATTTTTATTTATTCAGGAGACAAGCTATTTGTGAAGTATTTCCCGTGATTATTAGTCGAAATTGTGGTAGGAATATGCGATAATGTAGAGCAAGGAGTGATGGCTGTGAGTAAGGAATTGTTAGTATTGATTGATTATGAAGTGGATGTATTAGAGACGTTTCGAGAGATGGCTAGTGAGTATCAGTTGGTGAGTGAGTTTGAGGAAGCTGATTTTTCGAAGGTTGAGATTGTACTGGGTTGGGATGAGCGGTTAGTTGATGTGCTTGAGTCGGGTCAGCATCAGTTGAAATGGATTCAGCTATCGACAGCTGGAGTGGATAAGTTGCCACTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1805092-1804659 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040417.1 Dolosigranulum pigrum strain KPL3077 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1805091 37 100.0 29 ..................................... TAAACCAACTTGTCACAGCTTCGAGAGGT 1805025 37 100.0 29 ..................................... ATTGAAAAAGATAAGGGAGTGGGATAATG 1804959 37 100.0 29 ..................................... AGTTTGGCACGCAAGTTCGCTCAGGGCTA 1804893 37 100.0 29 ..................................... GCTAATTCTTTCTTATTCATCTAGAATAA 1804827 37 97.3 29 T.................................... CCGAATGGAAGAATTTATCCGAGAATTAA 1804761 37 100.0 29 ..................................... TACTTGATTAAAATATTGTTTGTTTACCT 1804695 37 97.3 0 T.................................... | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 99.2 29 AGTTTTAGTGATAGGAAATTATTGAGAGTACAAAAAC # Left flank : CGCTGAGTTCTGCGTCCACTTATACGTGCTCACCCCTTGTTCTTCTTCCGTCAATTGGACCGCCGAGCCCCCTGACAGCGGAATAATAAACAATTGCGGCTTATTATTGTCCGTATTAGTAGACAGATAAGACAACCACTTGGCATTCGGCGACAGCGCCAGCGATGTATTGCTCTGACCACCATCACCCCAATGCACCCTCTCCCCCGTCTTCTGATTCACACTGTAAATTGTTTTCTGATAATTATTCTCTTCTTCATCCACCAACGTCTCAACAAAAAACACCTGATCCTGATGAACAACCGGCTCCGAAACCGTCTTTATCTCATATAAACTCTCATTGGTCATAACTGACATATCATAACTCCTCTAAGCTTTTAAGGTAACTTTATTTTACCGGAAAAAGAAATCACCGTCCAACTAAAAACAAGCTACTACAAGGAGGAAATTGATCGGAGCGAATTTGGAAACTATCGAGGAGTGGATGCTAGAGATAGAAA # Right flank : CTCAAATTAACCAAATGATTTTTTTCGAGATTGATATTACTCTAGTAGAAATGCAGTTTCTAACGCACTTAGCGTTTCATCTGACGTCTCAAATGTAACCGGCATTTCTAATATGTCCCCTAACACCTTTAATAATATCATATCTTTTGTGAAAATAGTAGAATTTTTATAAATTTCTGTCTCACCAATGAGATGCGATATTCTATAAAAGCGTTGGGTGAGCATATTATCGGTATCTGTCATTTCATCTGGGTAATACTTTTGAACATTATCTCTAAAATACTCTAACTCAGGTAATTGCTCAAATCGGTTCATTGCTAGAACTGTCTTATCAATAAATTCACTTGAATATATATTGTTTTCTAATTGTCTGTAATGAATCACTATTATCTTTAGTAATTTTGTTTCCTGAGCAATTACTCTTACTTTTTCAATAAAAGATAAATAATCATTTATCTCCAAATAAGTTTCTGGATATCTGATGACAAGCCAAATCGCTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAGTGATAGGAAATTATTGAGAGTACAAAAAC # Alternate repeat : TGTTTTAGTGATAGGAAATTATTGAGAGTACAAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //